BCL11A • H1-hESC NGFTBRIQ6GYPCU • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTBRIQ6GYPCU data_source Factorbook Download track Download number_of_intervals 516 bp_covered 7,740 output_type transcription factor binding sites all genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BIP biological_replicate 1 technical_replicate 1_1 antibody BCL11A assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 10,157 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF847HXU_CCWTTGTYATGCAAA_sorted.bed.gz processed_file_md5 1179e7d71bee804d067b6c818bfc02b3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF847HXU_CCWTTGTYATGCAAA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF847HXU_CCWTTGTYATGCAAA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF847HXU_CCWTTGTYATGCAAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF847HXU_CCWTTGTYATGCAAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 5f26fe2229e6876bee84e217f339e7c8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Richard Myers, HAIB;System=NR;ENCODE_BED_id=ENCFF847HXU;ENCODE_bigBed_id=ENCFF833IPY;PMID=34755879;Motif_sequence=CCWTTGTYATGCAAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1) Motif finding BCL11A transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BIP] [TFBS]
BCL11A • HEK293 NGFTBROGGJ7APL • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTBROGGJ7APL data_source Factorbook Download track Download number_of_intervals 18 bp_covered 378 output_type transcription factor binding sites significant genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR021DJC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11A assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 643 downloaded_date 07/10/2024 release_date 10/25/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF972WFM_SVHCYYTGACCYCTGACCYCD_filtered.bed.gz processed_file_md5 95b31e65fc94ef86415ca405c92f6c22 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF972WFM_SVHCYYTGACCYCTGACCYCD_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF972WFM_SVHCYYTGACCYCTGACCYCD_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF972WFM_SVHCYYTGACCYCTGACCYCD.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF972WFM_SVHCYYTGACCYCTGACCYCD.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 24c8a46db25445009cddea5a31bcf0a0 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11A;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF972WFM;ENCODE_bigBed_id=ENCFF294OHB;PMID=34755879;Motif_sequence=SVHCYYTGACCYCTGACCYCD;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding BCL11A transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR021DJC] [TFBS]
BCL11A • GM12878 NGFTBTOV3HVJQX • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBTOV3HVJQX data_source Factorbook Download track Download number_of_intervals 6,572 bp_covered 65,720 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BHA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11A assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 88,252 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824QXX_BTGTGGTYWN_sorted.bed.gz processed_file_md5 5427f9892b897e9ba0453ca5d4c618d0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824QXX_BTGTGGTYWN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824QXX_BTGTGGTYWN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF824QXX_BTGTGGTYWN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF824QXX_BTGTGGTYWN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ef398fe4e644e887f8b03083ff0f0ecc data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF824QXX;ENCODE_bigBed_id=ENCFF717YPR;PMID=34755879;Motif_sequence=BTGTGGTYWN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding BCL11A transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BHA] [TFBS]
BCL11A • HEK293 NGFTBV56RHERXZ • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTBV56RHERXZ data_source Factorbook Download track Download number_of_intervals 7,962 bp_covered 167,202 output_type transcription factor binding sites all genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR021DJC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11A assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 147,181 downloaded_date 07/10/2024 release_date 10/25/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF972WFM_SVHCYYTGACCYCTGACCYCD_sorted.bed.gz processed_file_md5 e348ffb41fbc3a2b31dadce6053881fd wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF972WFM_SVHCYYTGACCYCTGACCYCD_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF972WFM_SVHCYYTGACCYCTGACCYCD_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF972WFM_SVHCYYTGACCYCTGACCYCD.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF972WFM_SVHCYYTGACCYCTGACCYCD.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 24c8a46db25445009cddea5a31bcf0a0 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11A;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF972WFM;ENCODE_bigBed_id=ENCFF294OHB;PMID=34755879;Motif_sequence=SVHCYYTGACCYCTGACCYCD;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding BCL11A transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR021DJC] [TFBS]
BCL11A • H1-hESC NGFTBXAHCNNJPI • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTBXAHCNNJPI data_source Factorbook Download track Download number_of_intervals 504 bp_covered 5,544 output_type transcription factor binding sites all genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BIP biological_replicate 1 technical_replicate 1_1 antibody BCL11A assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 8,115 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF847HXU_CHCAGCAGGDR_sorted.bed.gz processed_file_md5 349218081eed800d46482cf04a864442 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF847HXU_CHCAGCAGGDR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF847HXU_CHCAGCAGGDR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF847HXU_CHCAGCAGGDR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF847HXU_CHCAGCAGGDR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 69aa3310aadbf4f5ddbeddc79b8d0232 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Richard Myers, HAIB;System=NR;ENCODE_BED_id=ENCFF847HXU;ENCODE_bigBed_id=ENCFF833IPY;PMID=34755879;Motif_sequence=CHCAGCAGGDR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1) Motif finding BCL11A transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BIP] [TFBS]
Reference annotation (BCL11A) NGHOM6TVUHJAHG • HOMER20513432 Motif finding Reference annotation (BCL11A) TFBS Show metadata Download track Track metadata identifier NGHOM6TVUHJAHG data_source HOMER Download track Download number_of_intervals 1,146,717 bp_covered 13,760,604 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody BCL11A assay Motif finding file_format bed bed6+5 Homer file_size 12,726,998 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Bcl11a_Zf.hg38.processed.bed.gz processed_file_md5 ff2d2f2da544c286d4e93bc34baff26f wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Bcl11a_Zf.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Bcl11a_Zf.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=Bcl11a;DNA_binding_domain=Zf;Cell_type=HSPC;Assay=ChIP-Seq;Origin=GSE104676;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding BCL11A transcription factor binding sites (bed6+5 Homer) [TFBS]
BCL11B • HEK293 NGENC6SAY6VCOA • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENC6SAY6VCOA data_source ENCODE Download track Download number_of_intervals 8,321 bp_covered 2,943,681 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR770PQN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11B assay TF ChIP-seq file_format bed narrowPeak file_size 166,780 downloaded_date 06/12/2022 release_date 08/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF350AFL.bed.gz processed_file_md5 b51d963c6c5e1220c8adb3069d078c63 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF350AFL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF350AFL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF350AFL/@@download/ENCFF350AFL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF350AFL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fe397a16323a0df6d1d4a83052d9ad5a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11B;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR770PQN,GEO:GSE92041;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 1, 2) TF ChIP-seq BCL11B conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR770PQN] [Life stage: Embryonic] [TF ChIP-seq peaks]
BCL11B • HEK293 NGENC7MBFBRE46 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENC7MBFBRE46 data_source ENCODE Download track Download number_of_intervals 6,653 bp_covered 2,329,369 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR770PQN biological_replicate 1 technical_replicate 1_1 antibody BCL11B assay TF ChIP-seq file_format bed narrowPeak file_size 131,687 downloaded_date 06/12/2022 release_date 08/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF296FRB.bed.gz processed_file_md5 aaca26152be8d9fde419eb13fe43c8af wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF296FRB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF296FRB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF296FRB/@@download/ENCFF296FRB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF296FRB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5665410d18075d71be3a4df88c911637 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11B;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR770PQN,GEO:GSE92041;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 1) TF ChIP-seq BCL11B IDR thresholded peaks (narrowPeak) [Experiment: ENCSR770PQN] [Life stage: Embryonic] [TF ChIP-seq peaks]
BCL11B • HEK293 NGENCFIRIZVNQW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENCFIRIZVNQW data_source ENCODE Download track Download number_of_intervals 3,988 bp_covered 1,324,204 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR770PQN biological_replicate 2 technical_replicate 2_1 antibody BCL11B assay TF ChIP-seq file_format bed narrowPeak file_size 78,051 downloaded_date 06/12/2022 release_date 08/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF852IYC.bed.gz processed_file_md5 c57ca98eb94041eb57b1da8db1aa77e1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF852IYC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF852IYC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF852IYC/@@download/ENCFF852IYC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF852IYC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e42b33edd11bfc1642fa90f6ad596f57 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11B;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR770PQN,GEO:GSE92041;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 2) TF ChIP-seq BCL11B IDR thresholded peaks (narrowPeak) [Experiment: ENCSR770PQN] [Life stage: Embryonic] [TF ChIP-seq peaks]
BCL11B • HEK293 NGENCXP4XFG2QY • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENCXP4XFG2QY data_source ENCODE Download track Download number_of_intervals 9,750 bp_covered 3,470,705 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR770PQN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11B assay TF ChIP-seq file_format bed narrowPeak file_size 193,946 downloaded_date 06/12/2022 release_date 08/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF859UHP.bed.gz processed_file_md5 49303ee4904abf2d11b7bee9d1b06a61 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF859UHP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF859UHP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF859UHP/@@download/ENCFF859UHP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF859UHP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0a31ebe1cdfc2fcee7f21888fb242e09 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11B;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR770PQN,GEO:GSE92041;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 1, 2) TF ChIP-seq BCL11B IDR thresholded peaks (narrowPeak) [Experiment: ENCSR770PQN] [Life stage: Embryonic] [TF ChIP-seq peaks]
BCL11B • HEK293 NGFTB6WIHML4PA • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTB6WIHML4PA data_source Factorbook Download track Download number_of_intervals 6,441 bp_covered 193,230 output_type transcription factor binding sites significant genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR770PQN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11B assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 81,724 downloaded_date 07/10/2024 release_date 10/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF188WLZ_ACACACACACACACACACACACACACACAC_filtered.bed.gz processed_file_md5 7849296b5e225ff6be322db51fe13cfc wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF188WLZ_ACACACACACACACACACACACACACACAC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF188WLZ_ACACACACACACACACACACACACACACAC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF188WLZ_ACACACACACACACACACACACACACACAC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF188WLZ_ACACACACACACACACACACACACACACAC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7b423722f5b879d9a72bf70b2abaa3c5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11B;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF188WLZ;ENCODE_bigBed_id=ENCFF859UHP;PMID=34755879;Motif_sequence=ACACACACACACACACACACACACACACAC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding BCL11B transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR770PQN] [TFBS]
BCL11B • HEK293 NGFTBA6UB3PETW • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTBA6UB3PETW data_source Factorbook Download track Download number_of_intervals 14,716 bp_covered 441,480 output_type transcription factor binding sites all genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR770PQN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11B assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 214,818 downloaded_date 07/10/2024 release_date 10/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF188WLZ_ACACACACACACACACACACACACACACAC_sorted.bed.gz processed_file_md5 9e8a2d099c53f21a5cee77d68e8fc6cd wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF188WLZ_ACACACACACACACACACACACACACACAC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF188WLZ_ACACACACACACACACACACACACACACAC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF188WLZ_ACACACACACACACACACACACACACACAC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF188WLZ_ACACACACACACACACACACACACACACAC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7b423722f5b879d9a72bf70b2abaa3c5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11B;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF188WLZ;ENCODE_bigBed_id=ENCFF859UHP;PMID=34755879;Motif_sequence=ACACACACACACACACACACACACACACAC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding BCL11B transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR770PQN] [TFBS]
BCL11B • HEK293 NGFTBALPP25V6P • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTBALPP25V6P data_source Factorbook Download track Download number_of_intervals 6,572 bp_covered 98,580 output_type transcription factor binding sites all genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR770PQN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11B assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 109,330 downloaded_date 07/10/2024 release_date 10/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF188WLZ_HGRGGTCAGRGGTCA_sorted.bed.gz processed_file_md5 780d64a0171fabf7011c33aa9090b052 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF188WLZ_HGRGGTCAGRGGTCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF188WLZ_HGRGGTCAGRGGTCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF188WLZ_HGRGGTCAGRGGTCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF188WLZ_HGRGGTCAGRGGTCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 47fba99c1042c644a04fb3482425cfa8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11B;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF188WLZ;ENCODE_bigBed_id=ENCFF859UHP;PMID=34755879;Motif_sequence=HGRGGTCAGRGGTCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding BCL11B transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR770PQN] [TFBS]
BCL3 • A549 NGENC2BMUVRBYF • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENC2BMUVRBYF data_source ENCODE Download track Download number_of_intervals 7,754 bp_covered 3,639,169 output_type IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR673OGC biological_replicate 2 technical_replicate 2_1 antibody BCL3 assay TF ChIP-seq file_format bed narrowPeak file_size 132,241 downloaded_date 07/10/2025 release_date 12/31/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF528HPV.bed.gz processed_file_md5 86e28876c3634006804607a03bc16aca wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF528HPV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF528HPV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF528HPV/@@download/ENCFF528HPV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF528HPV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 91b4f231ef629fea227eda07eb70196a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 10 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=FactorBook:ENCSR673OGC,GEO:GSE91314;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-10-27;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 2) TF ChIP-seq BCL3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR673OGC] [Life stage: Adult] [TF ChIP-seq peaks]
BCL3 • HepG2 NGENC2BWTQWCL6 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENC2BWTQWCL6 data_source ENCODE Download track Download number_of_intervals 14,630 bp_covered 8,735,502 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR304NTV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL3 assay TF ChIP-seq file_format bed narrowPeak file_size 291,934 downloaded_date 06/12/2022 release_date 08/22/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF235AQM.bed.gz processed_file_md5 918e95b558457d3c9e8b29dbfe47f6d5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF235AQM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF235AQM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF235AQM/@@download/ENCFF235AQM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF235AQM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 43237a9625e0c21308d33b2751d079a2 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BCL3;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170286;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-08-28,2020-08-14;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq BCL3 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR304NTV] [Life stage: Child] [TF ChIP-seq peaks]
BCL3 • A549 NGENC3RZQCY54Z • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENC3RZQCY54Z data_source ENCODE Download track Download number_of_intervals 9,216 bp_covered 4,452,666 output_type IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR446SPT biological_replicate 1 technical_replicate 1_1 antibody BCL3 assay TF ChIP-seq file_format bed narrowPeak file_size 161,100 downloaded_date 07/10/2025 release_date 01/02/2021 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF944PIZ.bed.gz processed_file_md5 af805b3eb259df50a36ec169cc88c03b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF944PIZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF944PIZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF944PIZ/@@download/ENCFF944PIZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF944PIZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0623c58ee93d2a2108c39e92cca02de1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 4 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=FactorBook:ENCSR446SPT,GEO:GSE91264;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-10-27;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1) TF ChIP-seq BCL3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR446SPT] [Life stage: Adult] [TF ChIP-seq peaks]
BCL3 • A549 NGENC3RZYKMYJQ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENC3RZYKMYJQ data_source ENCODE Download track Download number_of_intervals 16,681 bp_covered 9,118,797 output_type IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR013KHB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL3 assay TF ChIP-seq file_format bed narrowPeak file_size 309,700 downloaded_date 09/10/2024 release_date 01/01/2021 date_added_to_filer 10/01/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF259KUT.bed.gz processed_file_md5 e4aad957c74dd2c9418c62e201bf25cd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF259KUT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF259KUT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF259KUT/@@download/ENCFF259KUT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF259KUT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 59fc2865cc01d9a3bb3ac59a812098b4 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 0.5 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=FactorBook:ENCSR013KHB,GEO:GSE91191;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-10-27;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 2_1, 3_1;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 2) TF ChIP-seq BCL3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR013KHB] [Life stage: Adult] [TF ChIP-seq peaks]
BCL3 • A549 NGENC424KJP5WG • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENC424KJP5WG data_source ENCODE Download track Download number_of_intervals 6,763 bp_covered 3,277,830 output_type IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR013KHB biological_replicate 1 technical_replicate 1_1 antibody BCL3 assay TF ChIP-seq file_format bed narrowPeak file_size 122,144 downloaded_date 07/10/2025 release_date 01/01/2021 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF449HYQ.bed.gz processed_file_md5 9ce7dec4461e4d544b76c4158c615d5c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF449HYQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF449HYQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF449HYQ/@@download/ENCFF449HYQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF449HYQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 13962287b4c7cd2209fcbf697dcdef87 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 0.5 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=FactorBook:ENCSR013KHB,GEO:GSE91191;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-10-27;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1) TF ChIP-seq BCL3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR013KHB] [Life stage: Adult] [TF ChIP-seq peaks]
BCL3 • A549 NGENC42QUGBRK3 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENC42QUGBRK3 data_source ENCODE Download track Download number_of_intervals 30,448 bp_covered 16,169,814 output_type IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR215UXN biological_replicate 2 technical_replicate 2_1 antibody BCL3 assay TF ChIP-seq file_format bed narrowPeak file_size 518,460 downloaded_date 07/10/2025 release_date 12/31/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF812MHN.bed.gz processed_file_md5 f6bc8dde90ce3ce708946516620cfd17 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF812MHN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF812MHN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF812MHN/@@download/ENCFF812MHN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF812MHN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c0d93283cee47be12f16438ecffda913 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91220,FactorBook:ENCSR215UXN;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-10-27;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 2) TF ChIP-seq BCL3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR215UXN] [Life stage: Adult] [TF ChIP-seq peaks]
BCL3 • A549 NGENC5LGOYJ4EQ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENC5LGOYJ4EQ data_source ENCODE Download track Download number_of_intervals 37,132 bp_covered 20,509,181 output_type IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR186IQL biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody BCL3 assay TF ChIP-seq file_format bed narrowPeak file_size 657,171 downloaded_date 09/10/2024 release_date 01/01/2021 date_added_to_filer 10/01/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF565DKN.bed.gz processed_file_md5 e14361c38b9da6d985479860754c4d94 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF565DKN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF565DKN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF565DKN/@@download/ENCFF565DKN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF565DKN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 17d9dec14fc14d377a7100858fd36fcc data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 6 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=FactorBook:ENCSR186IQL,GEO:GSE91216;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-10-27;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 2, 3) TF ChIP-seq BCL3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR186IQL] [Life stage: Adult] [TF ChIP-seq peaks]