EGR1 • Liver NGFTBU6IS4RRFE • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTBU6IS4RRFE data_source Factorbook Download track Download number_of_intervals 5,631 bp_covered 61,941 output_type transcription factor binding sites all genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR736BUG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 72,340 downloaded_date 07/10/2024 release_date 06/30/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF268GPU_TGCGCMTGCGC_sorted.bed.gz processed_file_md5 77707a03248f75de1c2c2f02a8087d3c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF268GPU_TGCGCMTGCGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF268GPU_TGCGCMTGCGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF268GPU_TGCGCMTGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF268GPU_TGCGCMTGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a83572607af9b3d80b0b1a2849be69a8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens with nonobstructive coronary artery disease| liver tissue male adult (32 years);Original_cell_type=liver;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF268GPU;ENCODE_bigBed_id=ENCFF130MBW;PMID=34755879;Motif_sequence=TGCGCMTGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Liver (repl. 1, 2) Motif finding EGR1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR736BUG] [Life stage: Adult] [TFBS]
EGR1 • GM12878 NGFTBVEEEWBZT2 • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBVEEEWBZT2 data_source Factorbook Download track Download number_of_intervals 45,686 bp_covered 913,720 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BMQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 835,218 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF637UJN_SSCSCCYCCGCCCMCGCMSB_sorted.bed.gz processed_file_md5 527aab18ee759ef68508182069e90911 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF637UJN_SSCSCCYCCGCCCMCGCMSB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF637UJN_SSCSCCYCCGCCCMCGCMSB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF637UJN_SSCSCCYCCGCCCMCGCMSB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF637UJN_SSCSCCYCCGCCCMCGCMSB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1b85b042b8e7827471b9ea53a49543f1 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF637UJN;ENCODE_bigBed_id=ENCFF092DJY;PMID=34755879;Motif_sequence=SSCSCCYCCGCCCMCGCMSB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding EGR1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BMQ] [TFBS]
EGR1 • Ishikawa NGFTBVGZGAFMDX • Factorbook34755879 Motif finding Ishikawa TFBS Show metadata Download track Track metadata identifier NGFTBVGZGAFMDX data_source Factorbook Download track Download number_of_intervals 30,419 bp_covered 638,799 output_type transcription factor binding sites all genome_build hg38 cell_type Ishikawa biosample_type Cell line biosample_term_id EFO:0005718 tissue_category Female Reproductive encode_experiment_id ENCSR000BSQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 503,544 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF943XDP_RGRRGGVAGAGRRGGCGGRRG_sorted.bed.gz processed_file_md5 b330da2aeb50bd17f2860832e836b61f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF943XDP_RGRRGGVAGAGRRGGCGGRRG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF943XDP_RGRRGGVAGAGRRGGCGGRRG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF943XDP_RGRRGGVAGAGRRGGCGGRRG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF943XDP_RGRRGGVAGAGRRGGCGGRRG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c9681245bde349cab4dadec07fdd6d9c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Ishikawa;Original_cell_type=Ishikawa;Lab=Richard Myers, HAIB;System=reproductive system;ENCODE_BED_id=ENCFF943XDP;ENCODE_bigBed_id=ENCFF550FKT;PMID=34755879;Motif_sequence=RGRRGGVAGAGRRGGCGGRRG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005718;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Ishikawa (repl. 1, 2) Motif finding EGR1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BSQ] [Life stage: Adult] [TFBS]
EGR1 • GM12878 NGFTBW5XQRU523 • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBW5XQRU523 data_source Factorbook Download track Download number_of_intervals 12,557 bp_covered 364,153 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BMQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 214,796 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF637UJN_ACACACWCDCACWCACMCACACWCHCMCA_sorted.bed.gz processed_file_md5 d7c4102720fbeb19310b1a0cfa8e007e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF637UJN_ACACACWCDCACWCACMCACACWCHCMCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF637UJN_ACACACWCDCACWCACMCACACWCHCMCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF637UJN_ACACACWCDCACWCACMCACACWCHCMCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF637UJN_ACACACWCDCACWCACMCACACWCHCMCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 9cc8f33ef67688f75421643f47b206d5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF637UJN;ENCODE_bigBed_id=ENCFF092DJY;PMID=34755879;Motif_sequence=ACACACWCDCACWCACMCACACWCHCMCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding EGR1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BMQ] [TFBS]
EGR1 • HCT116 NGFTBWEHG33ZZY • Factorbook34755879 Motif finding HCT116 TFBS Show metadata Download track Track metadata identifier NGFTBWEHG33ZZY data_source Factorbook Download track Download number_of_intervals 1,901 bp_covered 45,624 output_type transcription factor binding sites all genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR000BRZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 38,782 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF822VKJ_WKCCCTKAACHAAGATGGCVBCYR_sorted.bed.gz processed_file_md5 922d5da2fb0b854e0ea9bb8f03a6502b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF822VKJ_WKCCCTKAACHAAGATGGCVBCYR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF822VKJ_WKCCCTKAACHAAGATGGCVBCYR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF822VKJ_WKCCCTKAACHAAGATGGCVBCYR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF822VKJ_WKCCCTKAACHAAGATGGCVBCYR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a153af2df46ff3d56e96e275f7a1fb20 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HCT116;Original_cell_type=HCT116;Lab=Richard Myers, HAIB;System=digestive system;ENCODE_BED_id=ENCFF822VKJ;ENCODE_bigBed_id=ENCFF456NPQ;PMID=34755879;Motif_sequence=WKCCCTKAACHAAGATGGCVBCYR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook HCT116 (repl. 1, 2) Motif finding EGR1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BRZ] [Life stage: Adult] [TFBS]
EGR1 • K562 NGFTBWJVDTWP4G • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBWJVDTWP4G data_source Factorbook Download track Download number_of_intervals 98,328 bp_covered 2,458,200 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR024CNP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,814,483 downloaded_date 07/10/2024 release_date 05/17/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF298DXR_GRGKGCGKGGGCGGRGGNGGGGGNS_sorted.bed.gz processed_file_md5 47a83e70f76c21e26d0d63b2373d7237 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF298DXR_GRGKGCGKGGGCGGRGGNGGGGGNS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF298DXR_GRGKGCGKGGGCGGRGGNGGGGGNS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF298DXR_GRGKGCGKGGGCGGRGGNGGGGGNS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF298DXR_GRGKGCGKGGGCGGRGGNGGGGGNS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d39ace9628af4174638c7cd4daac540c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF298DXR;ENCODE_bigBed_id=ENCFF976PLK;PMID=34755879;Motif_sequence=GRGKGCGKGGGCGGRGGNGGGGGNS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding EGR1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR024CNP] [Life stage: Adult] [TFBS]
EGR1 • H1-hESC NGFTBY4LQ43YUI • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTBY4LQ43YUI data_source Factorbook Download track Download number_of_intervals 2,539 bp_covered 38,085 output_type transcription factor binding sites all genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BJA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 44,262 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF100KKH_MAGCYACTTCCGGSY_sorted.bed.gz processed_file_md5 3c79657740b1bf1db29798ee51d7b1f5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF100KKH_MAGCYACTTCCGGSY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF100KKH_MAGCYACTTCCGGSY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF100KKH_MAGCYACTTCCGGSY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF100KKH_MAGCYACTTCCGGSY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 78c2305cecd1b56c176759fec7a1d6e0 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Richard Myers, HAIB;System=NR;ENCODE_BED_id=ENCFF100KKH;ENCODE_bigBed_id=ENCFF451BLH;PMID=34755879;Motif_sequence=MAGCYACTTCCGGSY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1, 2) Motif finding EGR1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BJA] [TFBS]
EGR1 • Liver NGFTBYP5M2KMFW • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTBYP5M2KMFW data_source Factorbook Download track Download number_of_intervals 11,478 bp_covered 218,082 output_type transcription factor binding sites all genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR290ZOS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 204,626 downloaded_date 07/10/2024 release_date 02/08/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF768POQ_VKGCGKGGGCGGVRVNGSS_sorted.bed.gz processed_file_md5 a98817979ea96acecc174733431eba49 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF768POQ_VKGCGKGGGCGGVRVNGSS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF768POQ_VKGCGKGGGCGGVRVNGSS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF768POQ_VKGCGKGGGCGGVRVNGSS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF768POQ_VKGCGKGGGCGGVRVNGSS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1568ec93454c158a54ead9a9cf01c899 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens liver tissue female child (4 years);Original_cell_type=liver;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF768POQ;ENCODE_bigBed_id=ENCFF911LGW;PMID=34755879;Motif_sequence=VKGCGKGGGCGGVRVNGSS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook Liver (repl. 1, 2) Motif finding EGR1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR290ZOS] [Life stage: Child] [TFBS]
EGR1 • HCT116 NGFTBZ2NOC3CWR • Factorbook34755879 Motif finding HCT116 TFBS Show metadata Download track Track metadata identifier NGFTBZ2NOC3CWR data_source Factorbook Download track Download number_of_intervals 7 bp_covered 168 output_type transcription factor binding sites significant genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR000BRZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 502 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF822VKJ_WKCCCTKAACHAAGATGGCVBCYR_filtered.bed.gz processed_file_md5 9d22e26c543d34874195f08f6e8b7818 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF822VKJ_WKCCCTKAACHAAGATGGCVBCYR_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF822VKJ_WKCCCTKAACHAAGATGGCVBCYR_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF822VKJ_WKCCCTKAACHAAGATGGCVBCYR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF822VKJ_WKCCCTKAACHAAGATGGCVBCYR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a153af2df46ff3d56e96e275f7a1fb20 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HCT116;Original_cell_type=HCT116;Lab=Richard Myers, HAIB;System=digestive system;ENCODE_BED_id=ENCFF822VKJ;ENCODE_bigBed_id=ENCFF456NPQ;PMID=34755879;Motif_sequence=WKCCCTKAACHAAGATGGCVBCYR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook HCT116 (repl. 1, 2) Motif finding EGR1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BRZ] [Life stage: Adult] [TFBS]
EGR1 • Ishikawa NGFTBZXQ56R2EN • Factorbook34755879 Motif finding Ishikawa TFBS Show metadata Download track Track metadata identifier NGFTBZXQ56R2EN data_source Factorbook Download track Download number_of_intervals 215 bp_covered 4,515 output_type transcription factor binding sites significant genome_build hg38 cell_type Ishikawa biosample_type Cell line biosample_term_id EFO:0005718 tissue_category Female Reproductive encode_experiment_id ENCSR000BSQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,239 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF943XDP_RGRRGGVAGAGRRGGCGGRRG_filtered.bed.gz processed_file_md5 23101f03ff2e7c4bb2a9a547d97d5b8c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF943XDP_RGRRGGVAGAGRRGGCGGRRG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF943XDP_RGRRGGVAGAGRRGGCGGRRG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF943XDP_RGRRGGVAGAGRRGGCGGRRG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF943XDP_RGRRGGVAGAGRRGGCGGRRG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c9681245bde349cab4dadec07fdd6d9c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Ishikawa;Original_cell_type=Ishikawa;Lab=Richard Myers, HAIB;System=reproductive system;ENCODE_BED_id=ENCFF943XDP;ENCODE_bigBed_id=ENCFF550FKT;PMID=34755879;Motif_sequence=RGRRGGVAGAGRRGGCGGRRG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005718;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Ishikawa (repl. 1, 2) Motif finding EGR1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BSQ] [Life stage: Adult] [TFBS]
Reference annotation (EGR1) NGHOMHI2E37LMS • HOMER20513432 Motif finding Reference annotation (EGR1) TFBS Show metadata Download track Track metadata identifier NGHOMHI2E37LMS data_source HOMER Download track Download number_of_intervals 505,665 bp_covered 5,056,650 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody EGR1 assay Motif finding file_format bed bed6+5 Homer file_size 4,836,938 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Egr1_Zf.hg38.processed.bed.gz processed_file_md5 99c164b80632d6002d935deac26be473 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Egr1_Zf.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Egr1_Zf.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=Egr1;DNA_binding_domain=Zf;Cell_type=K562;Assay=ChIP-Seq;Origin=GSE32465;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding EGR1 transcription factor binding sites (bed6+5 Homer) [TFBS]
EGR2 • HEK293 NGENCE2KMJ3OXE • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENCE2KMJ3OXE data_source ENCODE Download track Download number_of_intervals 30,002 bp_covered 11,351,954 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR919CZU biological_replicate 2 technical_replicate 2_1 antibody EGR2 assay TF ChIP-seq file_format bed narrowPeak file_size 572,937 downloaded_date 06/12/2022 release_date 08/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF283RDR.bed.gz processed_file_md5 5e2cc788b74a9aeddfe09a4d84984721 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF283RDR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF283RDR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF283RDR/@@download/ENCFF283RDR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF283RDR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f567b7e525d1b3b57062bd4538e27e8c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens EGR2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR919CZU,GEO:GSE92162;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 2) TF ChIP-seq EGR2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR919CZU] [Life stage: Embryonic] [TF ChIP-seq peaks]
EGR2 • HEK293 NGENCGCRROV3PW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENCGCRROV3PW data_source ENCODE Download track Download number_of_intervals 41,427 bp_covered 13,591,914 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR919CZU biological_replicate 1 technical_replicate 1_1 antibody EGR2 assay TF ChIP-seq file_format bed narrowPeak file_size 737,679 downloaded_date 06/12/2022 release_date 08/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF927UZI.bed.gz processed_file_md5 de08883b981f6e3371c9626dfd4c50d1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF927UZI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF927UZI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF927UZI/@@download/ENCFF927UZI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF927UZI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 975df272555706409f99ec1aba0edb70 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens EGR2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR919CZU,GEO:GSE92162;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 1) TF ChIP-seq EGR2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR919CZU] [Life stage: Embryonic] [TF ChIP-seq peaks]
EGR2 • HEK293 NGENCGFCANIKBO • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENCGFCANIKBO data_source ENCODE Download track Download number_of_intervals 53,018 bp_covered 18,392,484 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR919CZU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR2 assay TF ChIP-seq file_format bed narrowPeak file_size 1,004,108 downloaded_date 06/12/2022 release_date 08/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF314PVX.bed.gz processed_file_md5 4b7cee3cf25045202eeec493f43d1293 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF314PVX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF314PVX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF314PVX/@@download/ENCFF314PVX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF314PVX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5521ade0f8f1bc2e0f716b3022c31abd data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens EGR2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR919CZU,GEO:GSE92162;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 1, 2) TF ChIP-seq EGR2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR919CZU] [Life stage: Embryonic] [TF ChIP-seq peaks]
EGR2 • HEK293 NGENCINF4KYLBK • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENCINF4KYLBK data_source ENCODE Download track Download number_of_intervals 53,639 bp_covered 18,587,314 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR919CZU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR2 assay TF ChIP-seq file_format bed narrowPeak file_size 1,012,823 downloaded_date 06/12/2022 release_date 08/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF336LFH.bed.gz processed_file_md5 37a763926cae032b0e6505a7557ccdf8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF336LFH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF336LFH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF336LFH/@@download/ENCFF336LFH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF336LFH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c03939f353f2083369811a3c718fbb75 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens EGR2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR919CZU,GEO:GSE92162;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 1, 2) TF ChIP-seq EGR2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR919CZU] [Life stage: Embryonic] [TF ChIP-seq peaks]
EGR2 • HEK293 NGFTB2O6EUPRWE • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTB2O6EUPRWE data_source Factorbook Download track Download number_of_intervals 84,243 bp_covered 1,769,103 output_type transcription factor binding sites significant genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR919CZU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 909,437 downloaded_date 07/10/2024 release_date 10/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF501WRO_GDGTGKGTGKRTGDGTGKGTG_filtered.bed.gz processed_file_md5 a25dc9c2e29d0ee2ba77a5657edc2de4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF501WRO_GDGTGKGTGKRTGDGTGKGTG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF501WRO_GDGTGKGTGKRTGDGTGKGTG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF501WRO_GDGTGKGTGKRTGDGTGKGTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF501WRO_GDGTGKGTGKRTGDGTGKGTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 caed2bdd1b5b6e0bc536c043d96f4184 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens EGR2;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF501WRO;ENCODE_bigBed_id=ENCFF336LFH;PMID=34755879;Motif_sequence=GDGTGKGTGKRTGDGTGKGTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding EGR2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR919CZU] [TFBS]
EGR2 • HEK293 NGFTBFWNOQN72Y • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTBFWNOQN72Y data_source Factorbook Download track Download number_of_intervals 87,808 bp_covered 965,888 output_type transcription factor binding sites all genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR919CZU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 766,193 downloaded_date 07/10/2024 release_date 10/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF501WRO_CAYMCACCCAC_sorted.bed.gz processed_file_md5 ecca10249f06bc29432fc08236ab87db wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF501WRO_CAYMCACCCAC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF501WRO_CAYMCACCCAC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF501WRO_CAYMCACCCAC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF501WRO_CAYMCACCCAC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f3f5bc2b4e975f6f32980cab5b58914f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens EGR2;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF501WRO;ENCODE_bigBed_id=ENCFF336LFH;PMID=34755879;Motif_sequence=CAYMCACCCAC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding EGR2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR919CZU] [TFBS]
EGR2 • HEK293 NGFTBICYIU7STF • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTBICYIU7STF data_source Factorbook Download track Download number_of_intervals 3,288 bp_covered 49,320 output_type transcription factor binding sites significant genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR919CZU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 24,154 downloaded_date 07/10/2024 release_date 10/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF501WRO_AYMCAYYCAYMCACC_filtered.bed.gz processed_file_md5 2e13ca255838eb67b7e9ea694b77a604 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF501WRO_AYMCAYYCAYMCACC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF501WRO_AYMCAYYCAYMCACC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF501WRO_AYMCAYYCAYMCACC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF501WRO_AYMCAYYCAYMCACC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 43f23b339d3508d5ca037d8d330d5c92 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens EGR2;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF501WRO;ENCODE_bigBed_id=ENCFF336LFH;PMID=34755879;Motif_sequence=AYMCAYYCAYMCACC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding EGR2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR919CZU] [TFBS]
EGR2 • HEK293 NGFTBKFHG2KRLG • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTBKFHG2KRLG data_source Factorbook Download track Download number_of_intervals 18,481 bp_covered 388,101 output_type transcription factor binding sites significant genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR919CZU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 245,620 downloaded_date 07/10/2024 release_date 10/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF501WRO_RGAGRAGGAGGARGAGRAGGA_filtered.bed.gz processed_file_md5 5027862fdbcd751a430f7051d422f4f0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF501WRO_RGAGRAGGAGGARGAGRAGGA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF501WRO_RGAGRAGGAGGARGAGRAGGA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF501WRO_RGAGRAGGAGGARGAGRAGGA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF501WRO_RGAGRAGGAGGARGAGRAGGA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b71fdf8a8a907ae1c37f22fcaecb92db data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens EGR2;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF501WRO;ENCODE_bigBed_id=ENCFF336LFH;PMID=34755879;Motif_sequence=RGAGRAGGAGGARGAGRAGGA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding EGR2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR919CZU] [TFBS]
EGR2 • HEK293 NGFTBMFEVYNL7O • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTBMFEVYNL7O data_source Factorbook Download track Download number_of_intervals 88,018 bp_covered 1,320,270 output_type transcription factor binding sites all genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR919CZU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 832,606 downloaded_date 07/10/2024 release_date 10/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF501WRO_AYMCAYYCAYMCACC_sorted.bed.gz processed_file_md5 63967b7771336b9abc3c2b8919fa99ea wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF501WRO_AYMCAYYCAYMCACC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF501WRO_AYMCAYYCAYMCACC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF501WRO_AYMCAYYCAYMCACC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF501WRO_AYMCAYYCAYMCACC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 43f23b339d3508d5ca037d8d330d5c92 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens EGR2;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF501WRO;ENCODE_bigBed_id=ENCFF336LFH;PMID=34755879;Motif_sequence=AYMCAYYCAYMCACC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding EGR2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR919CZU] [TFBS]