ERF • HepG2 NGFTB3MUJNX5B7 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB3MUJNX5B7 data_source Factorbook Download track Download number_of_intervals 7,475 bp_covered 112,125 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR159DQO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ERF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 126,996 downloaded_date 07/10/2024 release_date 02/12/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF009CVQ_CAGCACCWYGGACAG_sorted.bed.gz processed_file_md5 44d7c6e62f1c7aab8496030d28689b15 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF009CVQ_CAGCACCWYGGACAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF009CVQ_CAGCACCWYGGACAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF009CVQ_CAGCACCWYGGACAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF009CVQ_CAGCACCWYGGACAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bc1779120a5c76f4385f6c2a1b9f70c3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF009CVQ;ENCODE_bigBed_id=ENCFF647PIT;PMID=34755879;Motif_sequence=CAGCACCWYGGACAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ERF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR159DQO] [Life stage: Child] [TFBS]
ERF • HepG2 NGFTB6HSBX4EKD • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB6HSBX4EKD data_source Factorbook Download track Download number_of_intervals 10,259 bp_covered 215,439 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR159DQO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ERF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 203,680 downloaded_date 07/10/2024 release_date 02/12/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF009CVQ_GGCGCTGTCCRTGGTGCTGAA_sorted.bed.gz processed_file_md5 a74cb38318441f464195b3a277ee4c78 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF009CVQ_GGCGCTGTCCRTGGTGCTGAA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF009CVQ_GGCGCTGTCCRTGGTGCTGAA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF009CVQ_GGCGCTGTCCRTGGTGCTGAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF009CVQ_GGCGCTGTCCRTGGTGCTGAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 5ce90727eaa7b48a40ad0b98c9487f2c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF009CVQ;ENCODE_bigBed_id=ENCFF647PIT;PMID=34755879;Motif_sequence=GGCGCTGTCCRTGGTGCTGAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ERF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR159DQO] [Life stage: Child] [TFBS]
ERF • HepG2 NGFTBDCH62672Q • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBDCH62672Q data_source Factorbook Download track Download number_of_intervals 10,876 bp_covered 87,008 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR159DQO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ERF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 110,667 downloaded_date 07/10/2024 release_date 02/12/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF009CVQ_SMGGAAGY_sorted.bed.gz processed_file_md5 08f7016afbf2471ba50e34a92ed69a2a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF009CVQ_SMGGAAGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF009CVQ_SMGGAAGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF009CVQ_SMGGAAGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF009CVQ_SMGGAAGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1cfd8c02fe6cee50c478921a382cec95 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF009CVQ;ENCODE_bigBed_id=ENCFF647PIT;PMID=34755879;Motif_sequence=SMGGAAGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ERF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR159DQO] [Life stage: Child] [TFBS]
ERF • HepG2 NGFTBKA6PBEO72 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBKA6PBEO72 data_source Factorbook Download track Download number_of_intervals 326 bp_covered 6,846 output_type transcription factor binding sites significant genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR159DQO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ERF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 6,068 downloaded_date 07/10/2024 release_date 02/12/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF009CVQ_GGCGCTGTCCRTGGTGCTGAA_filtered.bed.gz processed_file_md5 69cbd51e6a10d0113266651ee2e754e3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF009CVQ_GGCGCTGTCCRTGGTGCTGAA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF009CVQ_GGCGCTGTCCRTGGTGCTGAA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF009CVQ_GGCGCTGTCCRTGGTGCTGAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF009CVQ_GGCGCTGTCCRTGGTGCTGAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 5ce90727eaa7b48a40ad0b98c9487f2c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF009CVQ;ENCODE_bigBed_id=ENCFF647PIT;PMID=34755879;Motif_sequence=GGCGCTGTCCRTGGTGCTGAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ERF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR159DQO] [Life stage: Child] [TFBS]
ERF • HepG2 NGFTBMLVO3KQPL • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBMLVO3KQPL data_source Factorbook Download track Download number_of_intervals 6,797 bp_covered 95,158 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR159DQO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ERF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 103,250 downloaded_date 07/10/2024 release_date 02/12/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF009CVQ_VCWRWGYAAACABN_sorted.bed.gz processed_file_md5 84d9bda105f1db25c40f9a5a96fe02cb wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF009CVQ_VCWRWGYAAACABN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF009CVQ_VCWRWGYAAACABN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF009CVQ_VCWRWGYAAACABN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF009CVQ_VCWRWGYAAACABN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 9df480d31af8b5708ca27b902b4977c8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF009CVQ;ENCODE_bigBed_id=ENCFF647PIT;PMID=34755879;Motif_sequence=VCWRWGYAAACABN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ERF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR159DQO] [Life stage: Child] [TFBS]
ERG • WTC11 NGENC6MCNPFARE • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENC6MCNPFARE data_source ENCODE Download track Download number_of_intervals 1,617 bp_covered 422,008 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR127NBZ biological_replicate 1 technical_replicate 1_1 antibody ERG assay TF ChIP-seq file_format bed narrowPeak file_size 32,652 downloaded_date 06/12/2022 release_date 11/25/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF718MEN.bed.gz processed_file_md5 a3ea749bfc3d1af77980773646d7ed27 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF718MEN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF718MEN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF718MEN/@@download/ENCFF718MEN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF718MEN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 170db669ec92d2b36072ba6464c904f9 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ERG;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE209559;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-12-08,2021-11-08;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1) TF ChIP-seq ERG IDR thresholded peaks (narrowPeak) [Experiment: ENCSR127NBZ] [Life stage: Adult] [TF ChIP-seq peaks]
ERG • WTC11 NGENCALNZX332O • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCALNZX332O data_source ENCODE Download track Download number_of_intervals 3,163 bp_covered 885,850 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR127NBZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ERG assay TF ChIP-seq file_format bed narrowPeak file_size 63,693 downloaded_date 06/12/2022 release_date 11/25/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF011YUL.bed.gz processed_file_md5 1e97d883a1c6701b148d202fbad03603 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF011YUL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF011YUL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF011YUL/@@download/ENCFF011YUL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF011YUL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f4127a63256434a5aa4e6771058aaa9a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ERG;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE209559;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-12-08,2021-11-08;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) TF ChIP-seq ERG IDR thresholded peaks (narrowPeak) [Experiment: ENCSR127NBZ] [Life stage: Adult] [TF ChIP-seq peaks]
ERG • WTC11 NGENCNF62K5VAS • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCNF62K5VAS data_source ENCODE Download track Download number_of_intervals 1,688 bp_covered 460,750 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR127NBZ biological_replicate 2 technical_replicate 2_1 antibody ERG assay TF ChIP-seq file_format bed narrowPeak file_size 33,744 downloaded_date 06/12/2022 release_date 11/25/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF098YWC.bed.gz processed_file_md5 5d82620a7a0504d09194812e5e526e5c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF098YWC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF098YWC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF098YWC/@@download/ENCFF098YWC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF098YWC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c2f193b5bd6091441c6dc5760c348f70 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ERG;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE209559;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-12-08,2021-11-08;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 2) TF ChIP-seq ERG IDR thresholded peaks (narrowPeak) [Experiment: ENCSR127NBZ] [Life stage: Adult] [TF ChIP-seq peaks]
ERG • WTC11 NGENCPKG5NAYSE • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCPKG5NAYSE data_source ENCODE Download track Download number_of_intervals 2,287 bp_covered 640,423 output_type conservative IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR127NBZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ERG assay TF ChIP-seq file_format bed narrowPeak file_size 46,422 downloaded_date 06/12/2022 release_date 11/25/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF018XLM.bed.gz processed_file_md5 ff8abcc60e7bab0147c86d33bef29521 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF018XLM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF018XLM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF018XLM/@@download/ENCFF018XLM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF018XLM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 947918173b62ffd47bd706413819152e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ERG;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE209559;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-12-08,2021-11-08;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) TF ChIP-seq ERG conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR127NBZ] [Life stage: Adult] [TF ChIP-seq peaks]
Reference annotation (ERG) NGHOMZLWDFYKPI • HOMER20513432 Motif finding Reference annotation (ERG) TFBS Show metadata Download track Track metadata identifier NGHOMZLWDFYKPI data_source HOMER Download track Download number_of_intervals 2,259,829 bp_covered 22,598,290 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody ERG assay Motif finding file_format bed bed6+5 Homer file_size 22,873,900 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/ERG_ETS.hg38.processed.bed.gz processed_file_md5 e5ccc75edf9dfd44d62ffeccd4513219 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/ERG_ETS.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/ERG_ETS.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=ERG;DNA_binding_domain=ETS;Cell_type=VCaP;Assay=ChIP-Seq;Origin=GSE14097;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding ERG transcription factor binding sites (bed6+5 Homer) [TFBS]
Reference annotation (Erra) NGHOMQSSQVVFPF • HOMER20513432 Motif finding Reference annotation (Erra) TFBS Show metadata Download track Track metadata identifier NGHOMQSSQVVFPF data_source HOMER Download track Download number_of_intervals 3,213,280 bp_covered 32,132,800 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Erra assay Motif finding file_format bed bed6+5 Homer file_size 33,678,120 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Erra_NR.hg38.processed.bed.gz processed_file_md5 ed01e206eff023d7c4803b73f4f1b1e2 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Erra_NR.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Erra_NR.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=Erra;DNA_binding_domain=NR;Cell_type=HepG2;Assay=ChIP-Seq;Origin=GSE31477;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding Erra transcription factor binding sites (bed6+5 Homer) [TFBS]
ESR1 • T47D NGENC2PJY5AAZN • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq T47D TF Show metadata Download track Track metadata identifier NGENC2PJY5AAZN data_source ENCODE Download track Download number_of_intervals 4,951 bp_covered 1,126,441 output_type IDR thresholded peaks genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id ENCSR000BJS biological_replicate 2 technical_replicate 2_1 antibody ESR1 assay TF ChIP-seq file_format bed narrowPeak file_size 94,899 downloaded_date 07/10/2025 release_date 12/26/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF994CYI.bed.gz processed_file_md5 9e6fdd97bd611a96e5d95fe2fa7c909c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF994CYI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF994CYI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF994CYI/@@download/ENCFF994CYI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF994CYI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ee93cb9dfea1cf65ba4d2e69d6e53da4 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens T47D treated with 100 nM genistein for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 54 years;Reference=NR;External_resources=GEO:GSM803374,UCSC-ENCODE-hg19:wgEncodeEH001556,FactorBook:ENCSR000BJS;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=T47D;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001247;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE T47D (repl. 2) TF ChIP-seq ESR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BJS] [Life stage: Adult] [TF ChIP-seq peaks]
ESR1 • Ishikawa NGENC4XQPDMWOT • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Ishikawa TF Show metadata Download track Track metadata identifier NGENC4XQPDMWOT data_source ENCODE Download track Download number_of_intervals 2,532 bp_covered 570,496 output_type conservative IDR thresholded peaks genome_build hg38 cell_type Ishikawa biosample_type Cell line biosample_term_id EFO:0005718 tissue_category Female Reproductive encode_experiment_id ENCSR000BIZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESR1 assay TF ChIP-seq file_format bed narrowPeak file_size 43,364 downloaded_date 07/10/2025 release_date 01/02/2021 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF745IYJ.bed.gz processed_file_md5 7048e3afa22d6b6570a28b5cda56d316 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF745IYJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF745IYJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF745IYJ/@@download/ENCFF745IYJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF745IYJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 13aa5dedf0517ad4fd5b210e5588e04b data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens Ishikawa treated with 0.02% dimethyl sulfoxide for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 39 years;Reference=PMID:22710073;External_resources=FactorBook:ENCSR000BIZ,UCSC-ENCODE-hg19:wgEncodeEH001537,GEO:GSM803421;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Ishikawa;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=Ishikawa cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005718;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE Ishikawa (repl. 1, 2) TF ChIP-seq ESR1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BIZ] [Life stage: Adult] [TF ChIP-seq peaks]
ESR1 • Ishikawa NGENC67CDLEFFM • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Ishikawa TF Show metadata Download track Track metadata identifier NGENC67CDLEFFM data_source ENCODE Download track Download number_of_intervals 18,123 bp_covered 5,237,128 output_type IDR thresholded peaks genome_build hg38 cell_type Ishikawa biosample_type Cell line biosample_term_id EFO:0005718 tissue_category Female Reproductive encode_experiment_id ENCSR000BIY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESR1 assay TF ChIP-seq file_format bed narrowPeak file_size 330,653 downloaded_date 09/10/2024 release_date 02/04/2021 date_added_to_filer 10/01/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF895KXU.bed.gz processed_file_md5 2030c6e41e9c1f486c5af092b0ec73bb wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF895KXU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF895KXU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF895KXU/@@download/ENCFF895KXU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF895KXU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 eb9f0a43a81adaa04e8862d051d1f606 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens Ishikawa treated with 10 nM estradiol for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 39 years;Reference=PMID:22710073;External_resources=FactorBook:ENCSR000BIY,UCSC-ENCODE-hg19:wgEncodeEH001536,GEO:GSM803422;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=Ishikawa;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=Ishikawa cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005718;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE Ishikawa (repl. 1, 2) TF ChIP-seq ESR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BIY] [Life stage: Adult] [TF ChIP-seq peaks]
ESR1 • Ishikawa NGENC6IC4PMSEX • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Ishikawa TF Show metadata Download track Track metadata identifier NGENC6IC4PMSEX data_source ENCODE Download track Download number_of_intervals 10,462 bp_covered 2,919,372 output_type IDR thresholded peaks genome_build hg38 cell_type Ishikawa biosample_type Cell line biosample_term_id EFO:0005718 tissue_category Female Reproductive encode_experiment_id ENCSR000BIY biological_replicate 1 technical_replicate 1_1 antibody ESR1 assay TF ChIP-seq file_format bed narrowPeak file_size 192,955 downloaded_date 07/10/2025 release_date 02/04/2021 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF019NLX.bed.gz processed_file_md5 85f458261c61edc57f9b4f6e21b1a200 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF019NLX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF019NLX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF019NLX/@@download/ENCFF019NLX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF019NLX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 632003dfe23d924b825ab1c999f76c18 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens Ishikawa treated with 10 nM estradiol for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 39 years;Reference=PMID:22710073;External_resources=FactorBook:ENCSR000BIY,UCSC-ENCODE-hg19:wgEncodeEH001536,GEO:GSM803422;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Ishikawa;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=Ishikawa cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005718;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE Ishikawa (repl. 1) TF ChIP-seq ESR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BIY] [Life stage: Adult] [TF ChIP-seq peaks]
ESR1 • Ishikawa NGENC6LX6M4NIE • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Ishikawa TF Show metadata Download track Track metadata identifier NGENC6LX6M4NIE data_source ENCODE Download track Download number_of_intervals 15,044 bp_covered 4,006,223 output_type IDR thresholded peaks genome_build hg38 cell_type Ishikawa biosample_type Cell line biosample_term_id EFO:0005718 tissue_category Female Reproductive encode_experiment_id ENCSR000BKL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESR1 assay TF ChIP-seq file_format bed narrowPeak file_size 252,321 downloaded_date 09/10/2024 release_date 12/27/2020 date_added_to_filer 10/01/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF467OTI.bed.gz processed_file_md5 6cdc3beb8fe63cfe0a03dda649a4d049 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF467OTI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF467OTI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF467OTI/@@download/ENCFF467OTI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF467OTI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 248b53092ba8ac7c1f4de4cfbcf4024a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens Ishikawa treated with 100 nM genistein for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 39 years;Reference=PMID:22710073;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001575,FactorBook:ENCSR000BKL,GEO:GSM803541;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=Ishikawa;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=Ishikawa cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005718;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE Ishikawa (repl. 1, 2) TF ChIP-seq ESR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BKL] [Life stage: Adult] [TF ChIP-seq peaks]
ESR1 • Ishikawa NGENC7FV5FA6BM • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Ishikawa TF Show metadata Download track Track metadata identifier NGENC7FV5FA6BM data_source ENCODE Download track Download number_of_intervals 1,474 bp_covered 286,562 output_type IDR thresholded peaks genome_build hg38 cell_type Ishikawa biosample_type Cell line biosample_term_id EFO:0005718 tissue_category Female Reproductive encode_experiment_id ENCSR000BIZ biological_replicate 2 technical_replicate 2_1 antibody ESR1 assay TF ChIP-seq file_format bed narrowPeak file_size 28,139 downloaded_date 07/10/2025 release_date 01/02/2021 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF948BLR.bed.gz processed_file_md5 379988abbb0cfed112ee55bef9e5026b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF948BLR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF948BLR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF948BLR/@@download/ENCFF948BLR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF948BLR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 658316eee1a26ae182579887d13beb68 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens Ishikawa treated with 0.02% dimethyl sulfoxide for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 39 years;Reference=PMID:22710073;External_resources=FactorBook:ENCSR000BIZ,UCSC-ENCODE-hg19:wgEncodeEH001537,GEO:GSM803421;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Ishikawa;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=Ishikawa cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005718;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE Ishikawa (repl. 2) TF ChIP-seq ESR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BIZ] [Life stage: Adult] [TF ChIP-seq peaks]
ESR1 • Ishikawa NGENC7LUKKX7S7 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Ishikawa TF Show metadata Download track Track metadata identifier NGENC7LUKKX7S7 data_source ENCODE Download track Download number_of_intervals 3,434 bp_covered 750,486 output_type IDR thresholded peaks genome_build hg38 cell_type Ishikawa biosample_type Cell line biosample_term_id EFO:0005718 tissue_category Female Reproductive encode_experiment_id ENCSR000BQR biological_replicate 2 technical_replicate 2_1 antibody ESR1 assay TF ChIP-seq file_format bed narrowPeak file_size 65,506 downloaded_date 07/10/2025 release_date 02/04/2021 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF507SMJ.bed.gz processed_file_md5 3221c4827047458bcb1619d4706fb596 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF507SMJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF507SMJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF507SMJ/@@download/ENCFF507SMJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF507SMJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7c1ee78bd7ca695e77a975157fd7d5fa data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens Ishikawa treated with 100 nM bisphenol A for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 39 years;Reference=PMID:22710073;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002313,FactorBook:ENCSR000BQR,GEO:GSM1010747;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-02-29,2011-07-18;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Ishikawa;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=Ishikawa cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005718;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE Ishikawa (repl. 2) TF ChIP-seq ESR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BQR] [Life stage: Adult] [TF ChIP-seq peaks]
ESR1 • MCF-7 NGENC7SJVO7FHF • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENC7SJVO7FHF data_source ENCODE Download track Download number_of_intervals 21,995 bp_covered 7,247,295 output_type conservative IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR463GOT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESR1 assay TF ChIP-seq file_format bed narrowPeak file_size 423,689 downloaded_date 06/12/2022 release_date 06/30/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF004AKH.bed.gz processed_file_md5 950808a6c2aa13fffd1ae096b29052e5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF004AKH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF004AKH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF004AKH/@@download/ENCFF004AKH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF004AKH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7ce09e3478d3072d1da5029c23f2c68f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens ESR1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE170139;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-07-08,2020-06-30,2022-01-20;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq ESR1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR463GOT] [Life stage: Adult] [TF ChIP-seq peaks]
ESR1 • T47D NGENCBY3UMNWY7 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq T47D TF Show metadata Download track Track metadata identifier NGENCBY3UMNWY7 data_source ENCODE Download track Download number_of_intervals 1,461 bp_covered 310,337 output_type conservative IDR thresholded peaks genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id ENCSR000BLL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESR1 assay TF ChIP-seq file_format bed narrowPeak file_size 29,115 downloaded_date 07/10/2025 release_date 12/10/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF351FMN.bed.gz processed_file_md5 9d51e8ad2fa20121c737a64b5d98f1ea wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF351FMN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF351FMN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF351FMN/@@download/ENCFF351FMN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF351FMN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 644f8d453b5d9fa6fa270812281b4f69 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens T47D treated with 0.02% dimethyl sulfoxide for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 54 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001601,FactorBook:ENCSR000BLL,GEO:GSM803519;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=T47D;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001247;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE T47D (repl. 1, 2) TF ChIP-seq ESR1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BLL] [Life stage: Adult] [TF ChIP-seq peaks]