ESRRA • MCF-7 NGFTBTTLCLBAJQ • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBTTLCLBAJQ data_source Factorbook Download track Download number_of_intervals 7,190 bp_covered 100,660 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR337NQP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESRRA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 84,396 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF560XEP_ACACACAYACACAC_sorted.bed.gz processed_file_md5 95ec8b575fe73002fc16de2b56e85b32 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF560XEP_ACACACAYACACAC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF560XEP_ACACACAYACACAC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF560XEP_ACACACAYACACAC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF560XEP_ACACACAYACACAC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 33e8ef31466b6de4bd13a1e87930d2b6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF560XEP;ENCODE_bigBed_id=ENCFF094SPX;PMID=34755879;Motif_sequence=ACACACAYACACAC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding ESRRA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR337NQP] [Life stage: Adult] [TFBS]
ESRRA • MCF-7 NGFTBUE3VIPQ3M • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBUE3VIPQ3M data_source Factorbook Download track Download number_of_intervals 6,187 bp_covered 68,057 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR954WVZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESRRA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 86,627 downloaded_date 07/10/2024 release_date 07/07/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF214ICQ_BTGACCTTGRV_sorted.bed.gz processed_file_md5 698e6d8581a3a9fb94cfa600c9596516 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF214ICQ_BTGACCTTGRV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF214ICQ_BTGACCTTGRV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF214ICQ_BTGACCTTGRV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF214ICQ_BTGACCTTGRV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ed4fee0a3bb69be87f15fe0f4a89d67b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF214ICQ;ENCODE_bigBed_id=ENCFF569SII;PMID=34755879;Motif_sequence=BTGACCTTGRV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding ESRRA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR954WVZ] [Life stage: Adult] [TFBS]
ESRRA • MCF-7 NGFTBUVVVMWR2P • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBUVVVMWR2P data_source Factorbook Download track Download number_of_intervals 1,724 bp_covered 43,100 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR954WVZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESRRA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 38,310 downloaded_date 07/10/2024 release_date 07/07/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF214ICQ_TCAGTTTCCTCATCTGTAAAATGGG_sorted.bed.gz processed_file_md5 73341541ff449c440669ecdf189c400e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF214ICQ_TCAGTTTCCTCATCTGTAAAATGGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF214ICQ_TCAGTTTCCTCATCTGTAAAATGGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF214ICQ_TCAGTTTCCTCATCTGTAAAATGGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF214ICQ_TCAGTTTCCTCATCTGTAAAATGGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e6a28e1b6211134a88d83e31514e9b62 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF214ICQ;ENCODE_bigBed_id=ENCFF569SII;PMID=34755879;Motif_sequence=TCAGTTTCCTCATCTGTAAAATGGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding ESRRA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR954WVZ] [Life stage: Adult] [TFBS]
ESRRA • MCF-7 NGFTBV6T2CIDQS • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBV6T2CIDQS data_source Factorbook Download track Download number_of_intervals 2,813 bp_covered 22,504 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR954WVZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESRRA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 29,516 downloaded_date 07/10/2024 release_date 07/07/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF214ICQ_TGACYCAK_sorted.bed.gz processed_file_md5 6d73f0a5e6d856ce1f73b438748f5034 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF214ICQ_TGACYCAK_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF214ICQ_TGACYCAK_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF214ICQ_TGACYCAK.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF214ICQ_TGACYCAK.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c7e529fe5f6f4297cc3cd29ba686f96a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF214ICQ;ENCODE_bigBed_id=ENCFF569SII;PMID=34755879;Motif_sequence=TGACYCAK;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding ESRRA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR954WVZ] [Life stage: Adult] [TFBS]
ESRRA • HepG2 NGFTBXDMOF2LA5 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBXDMOF2LA5 data_source Factorbook Download track Download number_of_intervals 1,148 bp_covered 17,220 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000EEW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESRRA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 19,865 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF770RAR_NNDGSYCAAGGTCAS_sorted.bed.gz processed_file_md5 2c3a06008c53375360d93244a64652d7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF770RAR_NNDGSYCAAGGTCAS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF770RAR_NNDGSYCAAGGTCAS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF770RAR_NNDGSYCAAGGTCAS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF770RAR_NNDGSYCAAGGTCAS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e4cd58c164821a94c6ddbe054a9d0ec5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 treated with 1 mM pyruvate for 6 hours, 1 _M forskolin for 6 hours;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF770RAR;ENCODE_bigBed_id=ENCFF702RPM;PMID=34755879;Motif_sequence=NNDGSYCAAGGTCAS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ESRRA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EEW] [Life stage: Child] [TFBS]
ESRRA • HepG2 NGFTBXJI7QYQKT • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBXJI7QYQKT data_source Factorbook Download track Download number_of_intervals 3 bp_covered 45 output_type transcription factor binding sites significant genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000EEW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESRRA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 380 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF770RAR_RGYGCCMCCTRGTGG_filtered.bed.gz processed_file_md5 bd15f89c36f17ba7f883f4828c6c25a7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF770RAR_RGYGCCMCCTRGTGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF770RAR_RGYGCCMCCTRGTGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF770RAR_RGYGCCMCCTRGTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF770RAR_RGYGCCMCCTRGTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 271f39fde9f4e365d7163763a140b9d4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 treated with 1 mM pyruvate for 6 hours, 1 _M forskolin for 6 hours;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF770RAR;ENCODE_bigBed_id=ENCFF702RPM;PMID=34755879;Motif_sequence=RGYGCCMCCTRGTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ESRRA transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000EEW] [Life stage: Child] [TFBS]
ESRRA • MCF-7 NGFTBXJIVZL76F • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBXJIVZL76F data_source Factorbook Download track Download number_of_intervals 31,238 bp_covered 687,236 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR337NQP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESRRA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 416,397 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF560XEP_RADRGARRGADRGADRGAWRGA_sorted.bed.gz processed_file_md5 b600fda70430479af72664c63ec4a80b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF560XEP_RADRGARRGADRGADRGAWRGA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF560XEP_RADRGARRGADRGADRGAWRGA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF560XEP_RADRGARRGADRGADRGAWRGA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF560XEP_RADRGARRGADRGADRGAWRGA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2b0d2451f38045a2ea12fb63d4ccb7e2 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF560XEP;ENCODE_bigBed_id=ENCFF094SPX;PMID=34755879;Motif_sequence=RADRGARRGADRGADRGAWRGA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding ESRRA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR337NQP] [Life stage: Adult] [TFBS]
ESRRA • A549 NGFTBYA3NFR6GQ • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBYA3NFR6GQ data_source Factorbook Download track Download number_of_intervals 9 bp_covered 135 output_type transcription factor binding sites significant genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR473SUA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESRRA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 477 downloaded_date 07/10/2024 release_date 07/07/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF039TWK_RSYGCCCCCTRGTGG_filtered.bed.gz processed_file_md5 a942a71810e5f4d548aa9499e1aad125 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF039TWK_RSYGCCCCCTRGTGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF039TWK_RSYGCCCCCTRGTGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF039TWK_RSYGCCCCCTRGTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF039TWK_RSYGCCCCCTRGTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4ab89e3164ce9a37e47efc6b36c6c82f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549;Original_cell_type=A549;Lab=Michael Snyder, Stanford;System=respiratory system;ENCODE_BED_id=ENCFF039TWK;ENCODE_bigBed_id=ENCFF977FTJ;PMID=34755879;Motif_sequence=RSYGCCCCCTRGTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding ESRRA transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR473SUA] [Life stage: Adult] [TFBS]
ESRRA • MCF-7 NGFTBYEB2BV4N3 • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBYEB2BV4N3 data_source Factorbook Download track Download number_of_intervals 12,240 bp_covered 183,600 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR337NQP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESRRA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 161,213 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF560XEP_RRGAAGGADGGAARG_sorted.bed.gz processed_file_md5 b30da2e961bc724ef7fe7e66c4dc59f4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF560XEP_RRGAAGGADGGAARG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF560XEP_RRGAAGGADGGAARG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF560XEP_RRGAAGGADGGAARG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF560XEP_RRGAAGGADGGAARG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ce133f64912c69801ce8467da55c26f9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF560XEP;ENCODE_bigBed_id=ENCFF094SPX;PMID=34755879;Motif_sequence=RRGAAGGADGGAARG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding ESRRA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR337NQP] [Life stage: Adult] [TFBS]
ESRRA • A549 NGFTBZA6RUHNZH • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBZA6RUHNZH data_source Factorbook Download track Download number_of_intervals 883 bp_covered 18,543 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR473SUA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESRRA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 18,816 downloaded_date 07/10/2024 release_date 07/07/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF039TWK_CCTCYCTGAGCCTCAGTTTYC_sorted.bed.gz processed_file_md5 06d8ac913d43fcf08cf2027acf34aebe wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF039TWK_CCTCYCTGAGCCTCAGTTTYC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF039TWK_CCTCYCTGAGCCTCAGTTTYC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF039TWK_CCTCYCTGAGCCTCAGTTTYC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF039TWK_CCTCYCTGAGCCTCAGTTTYC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f6da90e528f18c33fb43e1ae4443342a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549;Original_cell_type=A549;Lab=Michael Snyder, Stanford;System=respiratory system;ENCODE_BED_id=ENCFF039TWK;ENCODE_bigBed_id=ENCFF977FTJ;PMID=34755879;Motif_sequence=CCTCYCTGAGCCTCAGTTTYC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding ESRRA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR473SUA] [Life stage: Adult] [TFBS]
ESRRA • A549 NGFTBZBNTNFFU7 • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBZBNTNFFU7 data_source Factorbook Download track Download number_of_intervals 417 bp_covered 6,255 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR473SUA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESRRA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 7,737 downloaded_date 07/10/2024 release_date 07/07/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF039TWK_CATCTGTAAAATGGG_sorted.bed.gz processed_file_md5 fcfdd98f7c92e04aabe55d8663d95244 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF039TWK_CATCTGTAAAATGGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF039TWK_CATCTGTAAAATGGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF039TWK_CATCTGTAAAATGGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF039TWK_CATCTGTAAAATGGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1390824dcdb1e6652130cf0e0d36dc79 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549;Original_cell_type=A549;Lab=Michael Snyder, Stanford;System=respiratory system;ENCODE_BED_id=ENCFF039TWK;ENCODE_bigBed_id=ENCFF977FTJ;PMID=34755879;Motif_sequence=CATCTGTAAAATGGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding ESRRA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR473SUA] [Life stage: Adult] [TFBS]
ESRRA • HepG2 NGFTBZFIPBFGD2 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBZFIPBFGD2 data_source Factorbook Download track Download number_of_intervals 357 bp_covered 5,355 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000EEW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESRRA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 6,622 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF770RAR_RGYGCCMCCTRGTGG_sorted.bed.gz processed_file_md5 ec9dc95f0c9b57e72598c10e5c8277b6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF770RAR_RGYGCCMCCTRGTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF770RAR_RGYGCCMCCTRGTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF770RAR_RGYGCCMCCTRGTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF770RAR_RGYGCCMCCTRGTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 271f39fde9f4e365d7163763a140b9d4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 treated with 1 mM pyruvate for 6 hours, 1 _M forskolin for 6 hours;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF770RAR;ENCODE_bigBed_id=ENCFF702RPM;PMID=34755879;Motif_sequence=RGYGCCMCCTRGTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ESRRA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EEW] [Life stage: Child] [TFBS]
ESRRA • MCF-7 NGFTBZIDNGPUAX • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBZIDNGPUAX data_source Factorbook Download track Download number_of_intervals 285 bp_covered 7,125 output_type transcription factor binding sites significant genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR954WVZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESRRA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 5,678 downloaded_date 07/10/2024 release_date 07/07/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF214ICQ_TCAGTTTCCTCATCTGTAAAATGGG_filtered.bed.gz processed_file_md5 c6e728c71ac6baa1112d80b7df521967 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF214ICQ_TCAGTTTCCTCATCTGTAAAATGGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF214ICQ_TCAGTTTCCTCATCTGTAAAATGGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF214ICQ_TCAGTTTCCTCATCTGTAAAATGGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF214ICQ_TCAGTTTCCTCATCTGTAAAATGGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e6a28e1b6211134a88d83e31514e9b62 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF214ICQ;ENCODE_bigBed_id=ENCFF569SII;PMID=34755879;Motif_sequence=TCAGTTTCCTCATCTGTAAAATGGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding ESRRA transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR954WVZ] [Life stage: Adult] [TFBS]
ESRRA • A549 NGFTBZQ2X4GJPA • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBZQ2X4GJPA data_source Factorbook Download track Download number_of_intervals 665 bp_covered 5,320 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR473SUA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESRRA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 7,439 downloaded_date 07/10/2024 release_date 07/07/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF039TWK_TGAGTCAY_sorted.bed.gz processed_file_md5 3999b7588763f536029f75f68a114fec wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF039TWK_TGAGTCAY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF039TWK_TGAGTCAY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF039TWK_TGAGTCAY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF039TWK_TGAGTCAY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 300020b1f21a682f85a26e0ef9334e9e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549;Original_cell_type=A549;Lab=Michael Snyder, Stanford;System=respiratory system;ENCODE_BED_id=ENCFF039TWK;ENCODE_bigBed_id=ENCFF977FTJ;PMID=34755879;Motif_sequence=TGAGTCAY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding ESRRA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR473SUA] [Life stage: Adult] [TFBS]
ESRRB • K562 NGENCM6JIM6L27 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCM6JIM6L27 data_source ENCODE Download track Download number_of_intervals 627 bp_covered 173,048 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR264LYE biological_replicate 2 technical_replicate 2_1 antibody ESRRB assay TF ChIP-seq file_format bed narrowPeak file_size 12,971 downloaded_date 06/12/2022 release_date 07/08/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF709GWZ.bed.gz processed_file_md5 48a42181e7db063ab839fd664f1ee05b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF709GWZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF709GWZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF709GWZ/@@download/ENCFF709GWZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF709GWZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 05684a2a79e045ea7a907743602cdfeb data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ESRRB;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170076;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-03,2020-06-30;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq ESRRB IDR thresholded peaks (narrowPeak) [Experiment: ENCSR264LYE] [Life stage: Adult] [TF ChIP-seq peaks]
ESRRB • K562 NGENCO3M2ZPEOW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCO3M2ZPEOW data_source ENCODE Download track Download number_of_intervals 773 bp_covered 227,889 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR264LYE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESRRB assay TF ChIP-seq file_format bed narrowPeak file_size 15,956 downloaded_date 06/12/2022 release_date 07/08/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF042YEP.bed.gz processed_file_md5 63a2a3102c35ac501943f332ea23855d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF042YEP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF042YEP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF042YEP/@@download/ENCFF042YEP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF042YEP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 310179159abd94b00c245864da31d945 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ESRRB;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170076;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-03,2020-06-30;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq ESRRB conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR264LYE] [Life stage: Adult] [TF ChIP-seq peaks]
ESRRB • K562 NGENCS7GIGJINC • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCS7GIGJINC data_source ENCODE Download track Download number_of_intervals 285 bp_covered 84,785 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR264LYE biological_replicate 1 technical_replicate 1_1 antibody ESRRB assay TF ChIP-seq file_format bed narrowPeak file_size 5,926 downloaded_date 06/12/2022 release_date 07/08/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF936AQZ.bed.gz processed_file_md5 d328d14e7b6e18f296f3673ac61aaaed wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF936AQZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF936AQZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF936AQZ/@@download/ENCFF936AQZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF936AQZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d787fc147ce5839de893ecf9003279d6 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ESRRB;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170076;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-03,2020-06-30;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq ESRRB IDR thresholded peaks (narrowPeak) [Experiment: ENCSR264LYE] [Life stage: Adult] [TF ChIP-seq peaks]
ESRRB • K562 NGENCTYYFPTYW2 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCTYYFPTYW2 data_source ENCODE Download track Download number_of_intervals 999 bp_covered 295,689 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR264LYE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESRRB assay TF ChIP-seq file_format bed narrowPeak file_size 20,465 downloaded_date 06/12/2022 release_date 07/08/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF466RVG.bed.gz processed_file_md5 339a5818d911bf8521dfd0f445dd11ce wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF466RVG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF466RVG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF466RVG/@@download/ENCFF466RVG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF466RVG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4ef459f94be42379d304fbb7b86458bc data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ESRRB;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170076;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-03,2020-06-30;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq ESRRB IDR thresholded peaks (narrowPeak) [Experiment: ENCSR264LYE] [Life stage: Adult] [TF ChIP-seq peaks]
Reference annotation (ESRRB) NGHOM4YIRFSUXB • HOMER20513432 Motif finding Reference annotation (ESRRB) TFBS Show metadata Download track Track metadata identifier NGHOM4YIRFSUXB data_source HOMER Download track Download number_of_intervals 814,398 bp_covered 8,143,980 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody ESRRB assay Motif finding file_format bed bed6+5 Homer file_size 8,265,029 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Esrrb_NR.hg38.processed.bed.gz processed_file_md5 2cbc0beab6b1b4f7b0e073f98d651d69 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Esrrb_NR.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Esrrb_NR.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=Esrrb;DNA_binding_domain=NR;Cell_type=mES;Assay=ChIP-Seq;Origin=GSE11431;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding ESRRB transcription factor binding sites (bed6+5 Homer) [TFBS]
ESRRG • SK-N-SH NGENC2T6BXS4QY • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq SK-N-SH TF Show metadata Download track Track metadata identifier NGENC2T6BXS4QY data_source ENCODE Download track Download number_of_intervals 3,684 bp_covered 1,042,789 output_type IDR thresholded peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR023KKB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ESRRG assay TF ChIP-seq file_format bed narrowPeak file_size 74,778 downloaded_date 06/12/2022 release_date 11/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF394HLU.bed.gz processed_file_md5 32dde45e7e5ba9a2d60f8ea13dd59cc9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF394HLU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF394HLU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF394HLU/@@download/ENCFF394HLU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF394HLU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b6ca64d564b0e1aba717ee6718511887 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ESRRG treated with 6 _M all-trans-retinoic acid for 48 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSE174903;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-01-06,2020-06-30,2020-08-03;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 1, 2) TF ChIP-seq ESRRG IDR thresholded peaks (narrowPeak) [Experiment: ENCSR023KKB] [Life stage: Child] [TF ChIP-seq peaks]