T-helper cell NGABCOLFRNRPTR • Nasser 2021 ABC enhancer gene ABC T-helper cell Chromatin interactions Show metadata identifier NGABCOLFRNRPTR data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 67,224 bp_covered 24,081,860 output_type enhancer-gene interactions genome_build hg38 cell_type T-helper cell biosample_type Primary cell biosample_term_id CL:0000912 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,545,228 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD4-positive_helper_T_cell-Corces2016_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 19f80d4eeff4f6112bb41ae291248809 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD4-positive_helper_T_cell-Corces2016_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Cont tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD4-positive_helper_T_cell-Corces2016_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by- link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD4-positive_helper_T_cell-Corces2016_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD4-positive_helper_T_cell-Corces2016_EnhancerPredict raw_file_md5 0c84a2411638c823eedea4e8b1f4cef7 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=CD4-positive_helper_T_cell-Corces2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Corces 2016;biosample_type_note=needs revising;source_pubmed=27526324;sour system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene T-helper cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Cardiac muscle cell NGABCP64BDAYVH • Nasser 2021 ABC enhancer gene ABC Cardiac muscle cell Chromatin interactions Show metadata identifier NGABCP64BDAYVH data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 52,270 bp_covered 24,412,979 output_type enhancer-gene interactions genome_build hg38 cell_type Cardiac muscle cell biosample_type In vitro differentiated cells biosample_term_id CL:0000746 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,502,901 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_cardiac_muscle_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 0c66a24cb7bdf04e97bcd6cd319d16a5 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_cardiac_muscle_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/b tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_cardiac_muscle_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mod link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/cardiac_muscle_cell-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/cardiac_muscle_cell-ENCODE_EnhancerPredictionsFull.txt.lifted.be raw_file_md5 58bccba81ceb75e55a7ea25b4ef679ec data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=cardiac_muscle_cell-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10. system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Cardiac muscle cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
MCF 10A NGABCPCP7E2WQL • Nasser 2021 ABC enhancer gene ABC MCF 10A Chromatin interactions Show metadata identifier NGABCPCP7E2WQL data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 62,742 bp_covered 31,842,441 output_type enhancer-gene interactions genome_build hg38 cell_type MCF 10A biosample_type Cell line biosample_term_id EFO:0001200 tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,196,278 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_MCF10A-Ji2017_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 105d5e3a15c64b63cca1c3f05ae36d7e wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_MCF10A-Ji2017_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_int tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_MCF10A-Ji2017_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/MCF10A-Ji2017_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/MCF10A-Ji2017_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 6b9b2d901abf7434f0c45c89beca13a0 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=MCF10A-Ji2017;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Ji2017;biosample_type_note=needs revising;source_pubmed=29802342;source_doi=https://doi.org/10.103 system_category Reproductive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene MCF 10A ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Gastrocnemius medialis NGABCPEC7NPH6C • Nasser 2021 ABC enhancer gene ABC Gastrocnemius medialis Chromatin interactions Show metadata identifier NGABCPEC7NPH6C data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 62,516 bp_covered 43,715,288 output_type enhancer-gene interactions genome_build hg38 cell_type Gastrocnemius medialis biosample_type Tissue biosample_term_id UBERON:0011907 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,330,991 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_gastrocnemius_medialis-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 2f6b75c7c96b9a0fca3726862ecf6d1e wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_gastrocnemius_medialis-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mode tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_gastrocnemius_medialis-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_ link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/gastrocnemius_medialis-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/gastrocnemius_medialis-ENCODE_EnhancerPredictionsFull.txt.lif raw_file_md5 148d3267f5f2ad6785bbc31691f31c28 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=gastrocnemius_medialis-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/ system_category Muscular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Gastrocnemius medialis ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Trophoblast NGABCPFRTUN37I • Nasser 2021 ABC enhancer gene ABC Trophoblast Chromatin interactions Show metadata identifier NGABCPFRTUN37I data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 57,150 bp_covered 31,770,120 output_type enhancer-gene interactions genome_build hg38 cell_type Trophoblast biosample_type Primary cell biosample_term_id UBERON:0000088 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,841,791 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_trophoblast_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 ea70907b6323c39276ba88c95d134811 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_trophoblast_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4 tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_trophoblast_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/ link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/trophoblast_cell-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/trophoblast_cell-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 e7cd05996f8d841d377ceb339ffe1e7b data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=trophoblast_cell-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.103 system_category Embryo life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Trophoblast ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Spinal cord NGABCPGI4I7QET • Nasser 2021 ABC enhancer gene ABC Spinal cord Chromatin interactions Show metadata identifier NGABCPGI4I7QET data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 57,372 bp_covered 48,227,458 output_type enhancer-gene interactions genome_build hg38 cell_type Spinal cord biosample_type Primary tissue biosample_term_id UBERON:0002240 tissue_category Nervous encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,928,885 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_spinal_cord_fetal-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 942ec101cc7a35f6a6d02c1f1b1131b7 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_spinal_cord_fetal-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_spinal_cord_fetal-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/spinal_cord_fetal-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/spinal_cord_fetal-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 080c1ba35bf83bf757a767963eee4b23 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=spinal_cord_fetal-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.10 system_category Nervous life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Spinal cord ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Myotube NGABCPGPDMCXK3 • Nasser 2021 ABC enhancer gene ABC Myotube Chromatin interactions Show metadata identifier NGABCPGPDMCXK3 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 60,122 bp_covered 34,747,232 output_type enhancer-gene interactions genome_build hg38 cell_type Myotube biosample_type Primary cell biosample_term_id CL:0002372 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,140,754 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_myotube_originated_from_skeletal_muscle_myoblast-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 4c295275867145aa6e0df5e28bb4ec06 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_myotube_originated_from_skeletal_muscle_myoblast-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/A tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_myotube_originated_from_skeletal_muscle_myoblast-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_A link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/myotube_originated_from_skeletal_muscle_myoblast-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/myotube_originated_from_skeletal_m raw_file_md5 01c271cee3baad637b83ad981eb14376 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=myotube_originated_from_skeletal_muscle_myoblast-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563 system_category Muscular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Myotube ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
THP-1 NGABCQ2VOV46D6 • Nasser 2021 ABC enhancer gene ABC THP-1 Chromatin interactions Show metadata identifier NGABCQ2VOV46D6 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 61,964 bp_covered 17,273,478 output_type enhancer-gene interactions genome_build hg38 cell_type THP-1 biosample_type Cell line biosample_term_id EFO:0001253 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,087,101 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_2h_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 090eaf50b074dba78a052854e2df361f wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_2h_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus1 tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_2h_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4p link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_2h_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_2h_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 090d01b5c789b98bf63173959395597d data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=THP_pmaLPS_ATAC_2h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi. system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Karpas-422 NGABCQA4JNIHPZ • Nasser 2021 ABC enhancer gene ABC Karpas-422 Chromatin interactions Show metadata identifier NGABCQA4JNIHPZ data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 61,828 bp_covered 44,979,266 output_type enhancer-gene interactions genome_build hg38 cell_type Karpas-422 biosample_type Cell line biosample_term_id EFO:0005719 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,168,145 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_Karpas-422-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 e6903a7de2844379725e543334f1ca19 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_Karpas-422-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19 tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_Karpas-422-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4pl link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/Karpas-422-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/Karpas-422-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 c82a0fbc339bb3c32c759c9da0f24022 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=Karpas-422-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/natu system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Karpas-422 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Jurkat NGABCQGMV5OMGK • Nasser 2021 ABC enhancer gene ABC Jurkat Chromatin interactions Show metadata identifier NGABCQGMV5OMGK data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 59,570 bp_covered 16,891,528 output_type enhancer-gene interactions genome_build hg38 cell_type Jurkat biosample_type Immortalized cell line biosample_term_id EFO:0002796 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,953,000 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_Jurkat-Engreitz_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 6c62bdd9e988e542b16e435e18f16c76 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_Jurkat-Engreitz_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_i tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_Jurkat-Engreitz_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/Jurkat-Engreitz_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/Jurkat-Engreitz_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 8c885e951311abda26f97f3e250a6cb6 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=Jurkat-Engreitz;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Engreitz;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi.org/10 system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Jurkat ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Thyroid gland NGABCR3WYS7VJ4 • Nasser 2021 ABC enhancer gene ABC Thyroid gland Chromatin interactions Show metadata identifier NGABCR3WYS7VJ4 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 59,436 bp_covered 20,997,921 output_type enhancer-gene interactions genome_build hg38 cell_type Thyroid gland biosample_type Tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,015,420 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_thyroid_gland-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 2918ab2e927e67eebc73c237c05184fa wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_thyroid_gland-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plu tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_thyroid_gland-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/thyroid_gland-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/thyroid_gland-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 a3e9b6dec7a64062afc70f3097a8cd62 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=thyroid_gland-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/n system_category Endocrine life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Thyroid gland ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
PC-9 NGABCRDV543Q6P • Nasser 2021 ABC enhancer gene ABC PC-9 Chromatin interactions Show metadata identifier NGABCRDV543Q6P data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 59,038 bp_covered 32,361,842 output_type enhancer-gene interactions genome_build hg38 cell_type PC-9 biosample_type Cell line biosample_term_id EFO:0002847 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,893,772 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_PC-9-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 f07a3393087aef913d79f05dab409b0b wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_PC-9-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_inter tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_PC-9-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_i link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/PC-9-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/PC-9-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 02d9006c7fbcdfcf6a91ecba4b6de117 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=PC-9-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature1124 system_category Respiratory life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene PC-9 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
CD14+ monocyte NGABCRFEZV25S2 • Nasser 2021 ABC enhancer gene ABC CD14+ monocyte Chromatin interactions Show metadata identifier NGABCRFEZV25S2 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 66,668 bp_covered 22,417,155 output_type enhancer-gene interactions genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,556,385 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_BG_4h-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 8bae0356345493987cee9b2cc84f3bd0 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_BG_4h-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/AB tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_BG_4h-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_AB link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte_treated_with_BG_4h-Novakovic2016_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte_treated_with raw_file_md5 fc3129e64022eb42c096ac79e76a3269 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=CD14-positive_monocyte_treated_with_BG_4h-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;biosample_type_note=done;source_pubmed=27 system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
CD4+ NGABCRG3NQHFOD • Nasser 2021 ABC enhancer gene ABC CD4+ Chromatin interactions Show metadata identifier NGABCRG3NQHFOD data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 67,782 bp_covered 31,582,256 output_type enhancer-gene interactions genome_build hg38 cell_type CD4+ biosample_type Primary cell biosample_term_id CL:0000492 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,568,431 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD4-positive_helper_T_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 eab33de2a4295574e1afbafc83f08d53 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD4-positive_helper_T_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD4-positive_helper_T_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Cont link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD4-positive_helper_T_cell-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD4-positive_helper_T_cell-ENCODE_EnhancerPredictionsFull raw_file_md5 2884fc5efc67d7602847d46b7c882c8a data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=CD4-positive_helper_T_cell-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi. system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene CD4+ ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
U-937 NGABCRMWCQ3BGV • Nasser 2021 ABC enhancer gene ABC U-937 Chromatin interactions Show metadata identifier NGABCRMWCQ3BGV data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 61,492 bp_covered 17,729,595 output_type enhancer-gene interactions genome_build hg38 cell_type U-937 biosample_type Cell line biosample_term_id EFO:0001257 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,065,888 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_U937_LPS_4hr-Engreitz_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 7c32bf195824e5a749c538e2d12051ba wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_U937_LPS_4hr-Engreitz_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4pl tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_U937_LPS_4hr-Engreitz_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/be link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/U937_LPS_4hr-Engreitz_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/U937_LPS_4hr-Engreitz_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 64abced1b122bbc048d26a8b588bf6c0 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=U937_LPS_4hr-Engreitz;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Engreitz;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi. system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene U-937 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
CD19+ B cell NGABCS77XVHU5Z • Nasser 2021 ABC enhancer gene ABC CD19+ B cell Chromatin interactions Show metadata identifier NGABCS77XVHU5Z data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 66,826 bp_covered 39,924,810 output_type enhancer-gene interactions genome_build hg38 cell_type CD19+ B cell biosample_type Primary cell biosample_term_id CL:0001201 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,536,637 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD19-positive_B_cell-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 f8aaad15046f6f709a4f5fa45412d4bd wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD19-positive_B_cell-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD19-positive_B_cell-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_m link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD19-positive_B_cell-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD19-positive_B_cell-Roadmap_EnhancerPredictionsFull.txt.lifte raw_file_md5 3d0235b18b4ea89e9aaa0156340d0b1c data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=CD19-positive_B_cell-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/ system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene CD19+ B cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Skeletal muscle tissue NGABCSLATK55PG • Nasser 2021 ABC enhancer gene ABC Skeletal muscle tissue Chromatin interactions Show metadata identifier NGABCSLATK55PG data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 59,108 bp_covered 40,133,927 output_type enhancer-gene interactions genome_build hg38 cell_type Skeletal muscle tissue biosample_type Primary cell biosample_term_id UBERON:0001134 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,077,168 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_muscle_of_trunk_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 d6de299cabebeec97b1f967808a2ece4 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_muscle_of_trunk_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mode tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_muscle_of_trunk_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_ link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/muscle_of_trunk_fetal-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/muscle_of_trunk_fetal-Roadmap_EnhancerPredictionsFull.txt.lif raw_file_md5 68ea938c36b12d7c109146f96a7ea568 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=muscle_of_trunk_fetal-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org system_category Muscular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Skeletal muscle tissue ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
THP-1 NGABCSNJSJBFAF • Nasser 2021 ABC enhancer gene ABC THP-1 Chromatin interactions Show metadata identifier NGABCSNJSJBFAF data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 61,730 bp_covered 17,198,081 output_type enhancer-gene interactions genome_build hg38 cell_type THP-1 biosample_type Cell line biosample_term_id EFO:0001253 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,102,396 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_12h_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 59620c6dafdaa88bcf3d9818b7129730 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_12h_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_12h_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_12h_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_12h_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 b4bcd3eb297629b9272749048cae7c95 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=THP_pmaLPS_ATAC_12h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
CD14+ monocyte NGABCSTF5YYTG6 • Nasser 2021 ABC enhancer gene ABC CD14+ monocyte Chromatin interactions Show metadata identifier NGABCSTF5YYTG6 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 66,840 bp_covered 21,652,133 output_type enhancer-gene interactions genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,592,412 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_LPS_d6-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 b7838741929c43976ebe84791c706660 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_LPS_d6-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/A tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_LPS_d6-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_A link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte_treated_with_LPS_d6-Novakovic2016_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte_treated_wit raw_file_md5 f2216bfa804ad48f5d17988757b08cc3 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=CD14-positive_monocyte_treated_with_LPS_d6-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;biosample_type_note=done;source_pubmed=2 system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
MCF 10A NGABCTBYSX6KJJ • Nasser 2021 ABC enhancer gene ABC MCF 10A Chromatin interactions Show metadata identifier NGABCTBYSX6KJJ data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 61,804 bp_covered 32,942,054 output_type enhancer-gene interactions genome_build hg38 cell_type MCF 10A biosample_type Cell line biosample_term_id EFO:0001200 tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,200,589 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_MCF10A_treated_with_TAM24hr-Ji2017_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 b52e093fce78b6a9de072de27a8f6f54 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_MCF10A_treated_with_TAM24hr-Ji2017_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_MCF10A_treated_with_TAM24hr-Ji2017_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Con link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/MCF10A_treated_with_TAM24hr-Ji2017_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/MCF10A_treated_with_TAM24hr-Ji2017_EnhancerPredictionsFu raw_file_md5 e0d475fbfbb3713f8d427b695eed6963 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=MCF10A_treated_with_TAM24hr-Ji2017;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Ji2017;biosample_type_note=needs revising;source_pubmed=29802342;source_doi=h system_category Reproductive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene MCF 10A ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]