BCL3 • GM12878 NGFTBAI4FV2XMH • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBAI4FV2XMH data_source Factorbook Download track Download number_of_intervals 71,225 bp_covered 1,495,725 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BNQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 950,102 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF452NTN_YGTGTGYGTGTGTGTGYRTGT_sorted.bed.gz processed_file_md5 51147e4c36037d82c8d2688afed8be81 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF452NTN_YGTGTGYGTGTGTGTGYRTGT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF452NTN_YGTGTGYGTGTGTGTGYRTGT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF452NTN_YGTGTGYGTGTGTGTGYRTGT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF452NTN_YGTGTGYGTGTGTGTGYRTGT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 158d570259520d229e56ec164f02f3ef data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF452NTN;ENCODE_bigBed_id=ENCFF854PAY;PMID=34755879;Motif_sequence=YGTGTGYGTGTGTGTGYRTGT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding BCL3 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BNQ] [TFBS]
BCL3 • A549 NGFTBD372YDTJF • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBD372YDTJF data_source Factorbook Download track Download number_of_intervals 1,537 bp_covered 16,907 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR215UXN biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 20,772 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF683LGZ_KVTTKWGCAAT_sorted.bed.gz processed_file_md5 359d632016c7ad17c43167a3bc54a459 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF683LGZ_KVTTKWGCAAT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF683LGZ_KVTTKWGCAAT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF683LGZ_KVTTKWGCAAT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF683LGZ_KVTTKWGCAAT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4c416164938acd53a7ecb56c40290c11 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF683LGZ;ENCODE_bigBed_id=ENCFF510OZZ;PMID=34755879;Motif_sequence=KVTTKWGCAAT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding BCL3 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR215UXN] [Life stage: Adult] [TFBS]
BCL3 • A549 NGFTBFRTSZN2TO • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBFRTSZN2TO data_source Factorbook Download track Download number_of_intervals 21 bp_covered 441 output_type transcription factor binding sites significant genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR555AYD biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 542 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF896BKZ_CTGACCCCTGCRATTTCCCCA_filtered.bed.gz processed_file_md5 5e59728a632cebf181b88416b45f8034 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF896BKZ_CTGACCCCTGCRATTTCCCCA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF896BKZ_CTGACCCCTGCRATTTCCCCA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF896BKZ_CTGACCCCTGCRATTTCCCCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF896BKZ_CTGACCCCTGCRATTTCCCCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 65a6f246ea13b1b77fe3ed9e9432d7e7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 7 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF896BKZ;ENCODE_bigBed_id=ENCFF137VKA;PMID=34755879;Motif_sequence=CTGACCCCTGCRATTTCCCCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding BCL3 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR555AYD] [Life stage: Adult] [TFBS]
BCL3 • A549 NGFTBGIOEVJYIV • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBGIOEVJYIV data_source Factorbook Download track Download number_of_intervals 6,882 bp_covered 144,522 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR555AYD biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 116,483 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF896BKZ_CTGACCCCTGCRATTTCCCCA_sorted.bed.gz processed_file_md5 bfcd4bd0c537bdfbc16fcbf44e7d84b5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF896BKZ_CTGACCCCTGCRATTTCCCCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF896BKZ_CTGACCCCTGCRATTTCCCCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF896BKZ_CTGACCCCTGCRATTTCCCCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF896BKZ_CTGACCCCTGCRATTTCCCCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 65a6f246ea13b1b77fe3ed9e9432d7e7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 7 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF896BKZ;ENCODE_bigBed_id=ENCFF137VKA;PMID=34755879;Motif_sequence=CTGACCCCTGCRATTTCCCCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding BCL3 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR555AYD] [Life stage: Adult] [TFBS]
BCL3 • A549 NGFTBH6UXM5UUH • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBH6UXM5UUH data_source Factorbook Download track Download number_of_intervals 4,043 bp_covered 40,430 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR673OGC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 50,880 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF978IEE_RTTKCAHAAY_sorted.bed.gz processed_file_md5 f0b3a8124dd3eb759979fc50f891037c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF978IEE_RTTKCAHAAY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF978IEE_RTTKCAHAAY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF978IEE_RTTKCAHAAY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF978IEE_RTTKCAHAAY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 08030ec1f23dd5b5ffb57d90809cf0c8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 10 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF978IEE;ENCODE_bigBed_id=ENCFF287HAI;PMID=34755879;Motif_sequence=RTTKCAHAAY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding BCL3 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR673OGC] [Life stage: Adult] [TFBS]
BCL3 • A549 NGFTBI4BR73LMG • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBI4BR73LMG data_source Factorbook Download track Download number_of_intervals 6,141 bp_covered 92,115 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR544GUO biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 88,561 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF008SZM_AHWRARCAAAYADWW_sorted.bed.gz processed_file_md5 87cf3ee9bae21dad63a60f2a07133db5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF008SZM_AHWRARCAAAYADWW_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF008SZM_AHWRARCAAAYADWW_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF008SZM_AHWRARCAAAYADWW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF008SZM_AHWRARCAAAYADWW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 488f1b48233017ebb872841cd284509c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF008SZM;ENCODE_bigBed_id=ENCFF214WKT;PMID=34755879;Motif_sequence=AHWRARCAAAYADWW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding BCL3 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR544GUO] [Life stage: Adult] [TFBS]
BCL3 • A549 NGFTBIDXYXOEYS • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBIDXYXOEYS data_source Factorbook Download track Download number_of_intervals 4,065 bp_covered 44,715 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR673OGC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 51,083 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF978IEE_TRTTTRCWCAD_sorted.bed.gz processed_file_md5 fa82ef764380fbebbab2e88eceb91adb wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF978IEE_TRTTTRCWCAD_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF978IEE_TRTTTRCWCAD_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF978IEE_TRTTTRCWCAD.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF978IEE_TRTTTRCWCAD.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 94bd5142b038dfe142e3fbcc760a047a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 10 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF978IEE;ENCODE_bigBed_id=ENCFF287HAI;PMID=34755879;Motif_sequence=TRTTTRCWCAD;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding BCL3 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR673OGC] [Life stage: Adult] [TFBS]
BCL3 • A549 NGFTBJ2KBOLL7M • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBJ2KBOLL7M data_source Factorbook Download track Download number_of_intervals 8,983 bp_covered 71,864 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR639KFO biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 78,597 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF968XIY_TGAGTCAB_sorted.bed.gz processed_file_md5 9878d4590f1e83eb5259769b42c5ef97 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF968XIY_TGAGTCAB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF968XIY_TGAGTCAB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF968XIY_TGAGTCAB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF968XIY_TGAGTCAB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1377d4df0b370de6cc88124cc51a97a5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 8 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF968XIY;ENCODE_bigBed_id=ENCFF625XWV;PMID=34755879;Motif_sequence=TGAGTCAB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding BCL3 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR639KFO] [Life stage: Adult] [TFBS]
BCL3 • A549 NGFTBJD4ELNNX5 • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBJD4ELNNX5 data_source Factorbook Download track Download number_of_intervals 6,123 bp_covered 128,583 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR639KFO biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 106,521 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF968XIY_NHNHANNDNWDRTTDTGMAAT_sorted.bed.gz processed_file_md5 d36a74204a6cf381146a3b0a062bb1a1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF968XIY_NHNHANNDNWDRTTDTGMAAT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF968XIY_NHNHANNDNWDRTTDTGMAAT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF968XIY_NHNHANNDNWDRTTDTGMAAT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF968XIY_NHNHANNDNWDRTTDTGMAAT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 de249b33512e16c0474147385c4f511e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 8 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF968XIY;ENCODE_bigBed_id=ENCFF625XWV;PMID=34755879;Motif_sequence=NHNHANNDNWDRTTDTGMAAT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding BCL3 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR639KFO] [Life stage: Adult] [TFBS]
BCL3 • A549 NGFTBL3LHMQJXV • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBL3LHMQJXV data_source Factorbook Download track Download number_of_intervals 6,507 bp_covered 52,056 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR673OGC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 61,629 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF978IEE_RTGACTCA_sorted.bed.gz processed_file_md5 a826c9ae6d2c5190647dc03d89bdf86c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF978IEE_RTGACTCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF978IEE_RTGACTCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF978IEE_RTGACTCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF978IEE_RTGACTCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e08bf4d3e291eb6f6b8085985ebf7525 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 10 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF978IEE;ENCODE_bigBed_id=ENCFF287HAI;PMID=34755879;Motif_sequence=RTGACTCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding BCL3 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR673OGC] [Life stage: Adult] [TFBS]
BCL3 • A549 NGFTBPBI6P2YSS • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBPBI6P2YSS data_source Factorbook Download track Download number_of_intervals 2,843 bp_covered 28,430 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR446SPT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 36,630 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF795HZA_RTTDTGMAAY_sorted.bed.gz processed_file_md5 6adf3d53554ab3b1036f703f7b7f3bec wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF795HZA_RTTDTGMAAY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF795HZA_RTTDTGMAAY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF795HZA_RTTDTGMAAY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF795HZA_RTTDTGMAAY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 0b282d13dd9082accb36cfe46ea39b21 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 4 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF795HZA;ENCODE_bigBed_id=ENCFF663SOV;PMID=34755879;Motif_sequence=RTTDTGMAAY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding BCL3 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR446SPT] [Life stage: Adult] [TFBS]
BCL3 • A549 NGFTBPMSWSPZ7A • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBPMSWSPZ7A data_source Factorbook Download track Download number_of_intervals 24 bp_covered 696 output_type transcription factor binding sites significant genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR544GUO biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 753 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF008SZM_AGGGGAAAGMRCGAACGCAGTCCCCCACT_filtered.bed.gz processed_file_md5 49260b6e10bec540a6e159de10111fda wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF008SZM_AGGGGAAAGMRCGAACGCAGTCCCCCACT_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF008SZM_AGGGGAAAGMRCGAACGCAGTCCCCCACT_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF008SZM_AGGGGAAAGMRCGAACGCAGTCCCCCACT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF008SZM_AGGGGAAAGMRCGAACGCAGTCCCCCACT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1fbc44c18e7e7d3aa62bf0384c6eb61c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF008SZM;ENCODE_bigBed_id=ENCFF214WKT;PMID=34755879;Motif_sequence=AGGGGAAAGMRCGAACGCAGTCCCCCACT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding BCL3 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR544GUO] [Life stage: Adult] [TFBS]
BCL3 • A549 NGFTBPUHIOHF45 • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBPUHIOHF45 data_source Factorbook Download track Download number_of_intervals 4,950 bp_covered 54,450 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR186IQL biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 61,529 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF034LON_WRTTKCWMAAB_sorted.bed.gz processed_file_md5 b2305e37a98d11b5982c69ce403849bc wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF034LON_WRTTKCWMAAB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF034LON_WRTTKCWMAAB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF034LON_WRTTKCWMAAB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF034LON_WRTTKCWMAAB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b6a6257024edf492dd9ceaf501c779c8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 6 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF034LON;ENCODE_bigBed_id=ENCFF065VDE;PMID=34755879;Motif_sequence=WRTTKCWMAAB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding BCL3 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR186IQL] [Life stage: Adult] [TFBS]
BCL3 • A549 NGFTBQF6BMBNKB • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBQF6BMBNKB data_source Factorbook Download track Download number_of_intervals 50,118 bp_covered 551,298 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR555AYD biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 527,170 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF896BKZ_CCGCYGCCGCC_sorted.bed.gz processed_file_md5 ca98b30fe1caae307e555ba2abb257cc wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF896BKZ_CCGCYGCCGCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF896BKZ_CCGCYGCCGCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF896BKZ_CCGCYGCCGCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF896BKZ_CCGCYGCCGCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3a278f0cc4ad8d11a33a02efc5bc1db5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 7 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF896BKZ;ENCODE_bigBed_id=ENCFF137VKA;PMID=34755879;Motif_sequence=CCGCYGCCGCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding BCL3 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR555AYD] [Life stage: Adult] [TFBS]
BCL3 • A549 NGFTBQFMW565VS • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBQFMW565VS data_source Factorbook Download track Download number_of_intervals 5,000 bp_covered 55,000 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BQH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 62,441 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF633RWF_VTGAGTCAYHV_sorted.bed.gz processed_file_md5 55193096ca327c848f9ac21793eccfe6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF633RWF_VTGAGTCAYHV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF633RWF_VTGAGTCAYHV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF633RWF_VTGAGTCAYHV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF633RWF_VTGAGTCAYHV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 27ca1430f384448c617bdba251d5591f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF633RWF;ENCODE_bigBed_id=ENCFF515JRX;PMID=34755879;Motif_sequence=VTGAGTCAYHV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding BCL3 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BQH] [Life stage: Adult] [TFBS]
BCL3 • A549 NGFTBSOD4PVL7Z • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBSOD4PVL7Z data_source Factorbook Download track Download number_of_intervals 30 bp_covered 900 output_type transcription factor binding sites significant genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR215UXN biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 775 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF683LGZ_AAATGTGGGAAACTCGRCTGCATAATTTGT_filtered.bed.gz processed_file_md5 845f39d95cf6d96810cb85c2e12c6427 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF683LGZ_AAATGTGGGAAACTCGRCTGCATAATTTGT_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF683LGZ_AAATGTGGGAAACTCGRCTGCATAATTTGT_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF683LGZ_AAATGTGGGAAACTCGRCTGCATAATTTGT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF683LGZ_AAATGTGGGAAACTCGRCTGCATAATTTGT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8063d3585024cec43789a796f6112a6c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF683LGZ;ENCODE_bigBed_id=ENCFF510OZZ;PMID=34755879;Motif_sequence=AAATGTGGGAAACTCGRCTGCATAATTTGT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding BCL3 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR215UXN] [Life stage: Adult] [TFBS]
BCL3 • A549 NGFTBSWVFN5JKD • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBSWVFN5JKD data_source Factorbook Download track Download number_of_intervals 4,090 bp_covered 57,260 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BQH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 62,182 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF633RWF_DGGGRAADYCCCWG_sorted.bed.gz processed_file_md5 279bea97fe216c7fbf8cd9c08acc1198 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF633RWF_DGGGRAADYCCCWG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF633RWF_DGGGRAADYCCCWG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF633RWF_DGGGRAADYCCCWG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF633RWF_DGGGRAADYCCCWG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6a59e813c3b763c0d6c8ced1f8738516 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF633RWF;ENCODE_bigBed_id=ENCFF515JRX;PMID=34755879;Motif_sequence=DGGGRAADYCCCWG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding BCL3 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BQH] [Life stage: Adult] [TFBS]
BCL3 • A549 NGFTBT62PXWDF7 • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBT62PXWDF7 data_source Factorbook Download track Download number_of_intervals 4,060 bp_covered 44,660 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BQH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 51,453 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF633RWF_TRTTTRCWYWD_sorted.bed.gz processed_file_md5 a1f8dddd34b80e55105550b25fb6ef89 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF633RWF_TRTTTRCWYWD_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF633RWF_TRTTTRCWYWD_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF633RWF_TRTTTRCWYWD.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF633RWF_TRTTTRCWYWD.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8f70c947fd8d160594a1cdfb284b6524 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF633RWF;ENCODE_bigBed_id=ENCFF515JRX;PMID=34755879;Motif_sequence=TRTTTRCWYWD;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding BCL3 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BQH] [Life stage: Adult] [TFBS]
BCL3 • GM12878 NGFTBTKL4I7Z7T • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBTKL4I7Z7T data_source Factorbook Download track Download number_of_intervals 65,797 bp_covered 723,767 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BNQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 660,658 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF452NTN_CACACACRYRC_sorted.bed.gz processed_file_md5 4c188c2129e7580e2c38573eed80a595 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF452NTN_CACACACRYRC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF452NTN_CACACACRYRC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF452NTN_CACACACRYRC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF452NTN_CACACACRYRC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8802423587cf57e33ceab2b399102152 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF452NTN;ENCODE_bigBed_id=ENCFF854PAY;PMID=34755879;Motif_sequence=CACACACRYRC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding BCL3 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BNQ] [TFBS]
BCL3 • GM12878 NGFTBV4QZLVFW2 • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBV4QZLVFW2 data_source Factorbook Download track Download number_of_intervals 52,846 bp_covered 1,109,766 output_type transcription factor binding sites significant genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BNQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL3 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 698,200 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF452NTN_TGTGTGTGCRTGTGTGTGTGT_filtered.bed.gz processed_file_md5 15be12a4f3ed9d707de8e48309e6256d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF452NTN_TGTGTGTGCRTGTGTGTGTGT_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF452NTN_TGTGTGTGCRTGTGTGTGTGT_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF452NTN_TGTGTGTGCRTGTGTGTGTGT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF452NTN_TGTGTGTGCRTGTGTGTGTGT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f914364b9478456cdbde0e89b4bfbaa1 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF452NTN;ENCODE_bigBed_id=ENCFF854PAY;PMID=34755879;Motif_sequence=TGTGTGTGCRTGTGTGTGTGT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding BCL3 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BNQ] [TFBS]