Reference annotation (EWS:ERG) NGHOMXPCY3CWCI • HOMER20513432 Motif finding Reference annotation (EWS:ERG) TFBS Show metadata Download track Track metadata identifier NGHOMXPCY3CWCI data_source HOMER Download track Download number_of_intervals 1,318,069 bp_covered 13,180,690 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody EWS:ERG assay Motif finding file_format bed bed6+5 Homer file_size 12,681,195 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/EWS-ERG-fusion_ETS.hg38.processed.bed.gz processed_file_md5 d94aa23cb05225be21874e00a5d79502 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/EWS-ERG-fusion_ETS.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/EWS-ERG-fusion_ETS.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=EWS:ERG-fusion;DNA_binding_domain=ETS;Cell_type=CADO_ES1;Assay=ChIP-Seq;Origin=SRA014231;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding EWS:ERG transcription factor binding sites (bed6+5 Homer) [TFBS]
Reference annotation (EWS:FLI1) NGHOM7VHCWT2DA • HOMER20513432 Motif finding Reference annotation (EWS:FLI1) TFBS Show metadata Download track Track metadata identifier NGHOM7VHCWT2DA data_source HOMER Download track Download number_of_intervals 646,154 bp_covered 6,461,540 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody EWS:FLI1 assay Motif finding file_format bed bed6+5 Homer file_size 6,413,518 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/EWS-FLI1-fusion_ETS.hg38.processed.bed.gz processed_file_md5 4d2ff3186e144ce71d67a0cdf83423ad wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/EWS-FLI1-fusion_ETS.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/EWS-FLI1-fusion_ETS.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=EWS:FLI1-fusion;DNA_binding_domain=ETS;Cell_type=SK_N_MC;Assay=ChIP-Seq;Origin=SRA014231;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding EWS:FLI1 transcription factor binding sites (bed6+5 Homer) [TFBS]
EWSR1 • K562 NGENC57OPTQL4W • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENC57OPTQL4W data_source ENCODE Download track Download number_of_intervals 23,207 bp_covered 1,288,398 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR887LPK biological_replicate 2 technical_replicate 2_1 antibody EWSR1 assay eCLIP file_format bed narrowPeak file_size 369,720 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF190DZN.bed.gz processed_file_md5 c2217835826520fdeae0d7b159d5487c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF190DZN.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF190DZN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF190DZN/@@download/ENCFF190DZN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF190DZN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c5c535e983503389e8b25ef2a4b88bed data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE92135;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-04-26;Submitted_track_name=440_02.basedon_440_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) eCLIP EWSR1 peaks (narrowPeak) [Experiment: ENCSR887LPK] [Life stage: Adult] [RNA binding]
EWSR1 • K562 NGENCA23R56QIC • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCA23R56QIC data_source ENCODE Download track Download number_of_intervals 1,364 bp_covered 440,305 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR142YYA biological_replicate 1 technical_replicate 1_1 antibody EWSR1 assay TF ChIP-seq file_format bed narrowPeak file_size 26,976 downloaded_date 06/12/2022 release_date 11/28/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF008CFB.bed.gz processed_file_md5 c15ace51d55824a9a53aba668ec30f9a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF008CFB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF008CFB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF008CFB/@@download/ENCFF008CFB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF008CFB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b080f9ce527a7187a0f89b3af9e03298 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE127425;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2016-09-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq EWSR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR142YYA] [Life stage: Adult] [TF ChIP-seq peaks]
EWSR1 • K562 NGENCEMYQWWXE7 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCEMYQWWXE7 data_source ENCODE Download track Download number_of_intervals 413 bp_covered 122,568 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR142YYA biological_replicate 2 technical_replicate 2_1 antibody EWSR1 assay TF ChIP-seq file_format bed narrowPeak file_size 8,362 downloaded_date 06/12/2022 release_date 11/28/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF416YJN.bed.gz processed_file_md5 f22d44d7fdb0e014289f0e8827b956e6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF416YJN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF416YJN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF416YJN/@@download/ENCFF416YJN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF416YJN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fc30072c17ba12e1c944f6048a29634a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE127425;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2016-09-20;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq EWSR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR142YYA] [Life stage: Adult] [TF ChIP-seq peaks]
EWSR1 • K562 NGENCJHX4HNZDV • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCJHX4HNZDV data_source ENCODE Download track Download number_of_intervals 1,264 bp_covered 404,799 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR142YYA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EWSR1 assay TF ChIP-seq file_format bed narrowPeak file_size 24,984 downloaded_date 06/12/2022 release_date 11/28/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF361XQZ.bed.gz processed_file_md5 adb361b359d3a770c3c448ea22abf09b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF361XQZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF361XQZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF361XQZ/@@download/ENCFF361XQZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF361XQZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8991b09dbabc7a17502799d58c7a5acd data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE127425;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2016-09-20;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq EWSR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR142YYA] [Life stage: Adult] [TF ChIP-seq peaks]
EWSR1 • K562 NGENCK4265XMJW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCK4265XMJW data_source ENCODE Download track Download number_of_intervals 947 bp_covered 303,304 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR142YYA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EWSR1 assay TF ChIP-seq file_format bed narrowPeak file_size 18,737 downloaded_date 06/12/2022 release_date 11/28/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF457VOC.bed.gz processed_file_md5 d82ddead673144d4ea820593588eb454 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF457VOC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF457VOC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF457VOC/@@download/ENCFF457VOC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF457VOC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f86d8978ff95f19037b2ba9da751384d data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE127425;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2016-09-20;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq EWSR1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR142YYA] [Life stage: Adult] [TF ChIP-seq peaks]
EWSR1 • K562 NGENCWKY2D75I2 • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCWKY2D75I2 data_source ENCODE Download track Download number_of_intervals 23,995 bp_covered 1,274,707 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR887LPK biological_replicate 1 technical_replicate 1_1 antibody EWSR1 assay eCLIP file_format bed narrowPeak file_size 371,588 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF152FIO.bed.gz processed_file_md5 2628284f9a37cd45ae87530406090c59 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF152FIO.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF152FIO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF152FIO/@@download/ENCFF152FIO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF152FIO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e52f89edbfbc05975568adc2545052fd data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE92135;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-04-26;Submitted_track_name=440_01.basedon_440_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) eCLIP EWSR1 peaks (narrowPeak) [Experiment: ENCSR887LPK] [Life stage: Adult] [RNA binding]
EXOSC10 • K562 NGENCKRAC3VT2M • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCKRAC3VT2M data_source ENCODE Download track Download number_of_intervals 30,342 bp_covered 2,141,112 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR521GON biological_replicate 1 technical_replicate 1_1 antibody EXOSC10 assay eCLIP file_format bed narrowPeak file_size 531,692 downloaded_date 05/15/2024 release_date 01/13/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF607UEV.bed.gz processed_file_md5 49a01f19aaa95cf5f4dbcd477293436a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF607UEV.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF607UEV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF607UEV/@@download/ENCFF607UEV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF607UEV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 bc18d63c659b6e43b2cdb2ad7dd1939d data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284897;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2022-11-16,2023-01-24;Submitted_track_name=encode4_batch21.4161_CLIP1_CLIP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.sorted.blacklist-removed.nh.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38 V29;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) eCLIP EXOSC10 peaks (narrowPeak) [Experiment: ENCSR521GON] [Life stage: Adult] [RNA binding]
EXOSC10 • K562 NGENCNGVRZUJJB • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCNGVRZUJJB data_source ENCODE Download track Download number_of_intervals 13,690 bp_covered 1,001,588 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR521GON biological_replicate 2 technical_replicate 2_1 antibody EXOSC10 assay eCLIP file_format bed narrowPeak file_size 239,432 downloaded_date 05/15/2024 release_date 01/13/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF486PWI.bed.gz processed_file_md5 ef6df589e097c6176e4243cd5262e4f1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF486PWI.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF486PWI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF486PWI/@@download/ENCFF486PWI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF486PWI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 591eefb5c4d4a9aadf22080d964eafc4 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284897;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2022-11-16,2023-01-24;Submitted_track_name=encode4_batch21.4161_CLIP2_CLIP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.sorted.blacklist-removed.nh.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38 V29;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) eCLIP EXOSC10 peaks (narrowPeak) [Experiment: ENCSR521GON] [Life stage: Adult] [RNA binding]
EXOSC10 • K562 NGENCPGUKPT45S • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCPGUKPT45S data_source ENCODE Download track Download number_of_intervals 1,366 bp_covered 56,991 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR521GON biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EXOSC10 assay eCLIP file_format bed narrowPeak file_size 29,284 downloaded_date 05/15/2024 release_date 02/01/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF311XEJ.bed.gz processed_file_md5 2958cba90e08ca37a41c02340283f1cd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF311XEJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF311XEJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF311XEJ/@@download/ENCFF311XEJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF311XEJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 36b7421db987586f3ecf0cb679dc6cc8 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284897;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2022-11-16,2023-01-24;Submitted_track_name=4161_CLIP1_rep1.vs.4161_CLIP2_rep2.sorted.nh.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38 V29;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) eCLIP EXOSC10 peaks (narrowPeak) [Experiment: ENCSR521GON] [Life stage: Adult] [RNA binding]
EXOSC5 • K562 NGENCCFC2QWZ6L • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCCFC2QWZ6L data_source ENCODE Download track Download number_of_intervals 26,645 bp_covered 1,254,499 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR013CTQ biological_replicate 1 technical_replicate 1_1 antibody EXOSC5 assay eCLIP file_format bed narrowPeak file_size 409,338 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF517HCP.bed.gz processed_file_md5 1bfffdd6e502faf80a11763ad1e73da2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF517HCP.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF517HCP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF517HCP/@@download/ENCFF517HCP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF517HCP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 44f357687f765c7a8f9d3d58d1272d31 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32728246;External_resources=GEO:GSE176645;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2017-11-19;Submitted_track_name=491_01.basedon_491_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) eCLIP EXOSC5 peaks (narrowPeak) [Experiment: ENCSR013CTQ] [Life stage: Adult] [RNA binding]
EXOSC5 • HepG2 NGENCPGTASDWCC • ENCODE22955616 | 41168159 | 31713622 eCLIP HepG2 RNA binding Show metadata Download track Track metadata identifier NGENCPGTASDWCC data_source ENCODE Download track Download number_of_intervals 5,288 bp_covered 352,993 output_type peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR693JWP biological_replicate 1 technical_replicate 1_1 antibody EXOSC5 assay eCLIP file_format bed narrowPeak file_size 95,211 downloaded_date 06/10/2020 release_date 04/29/2018 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF108FMS.bed.gz processed_file_md5 a1629af806f32382d9ba23a03678b39d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF108FMS.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF108FMS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF108FMS/@@download/ENCFF108FMS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF108FMS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a53c851d05e40e03a9a3b1ec3e62f5e2 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=GEO:GSE177775;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2018-08-30;Submitted_track_name=722_01.basedon_722_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) eCLIP EXOSC5 peaks (narrowPeak) [Experiment: ENCSR693JWP] [Life stage: Child] [RNA binding]
EXOSC5 • K562 NGENCRBIOLLRTD • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCRBIOLLRTD data_source ENCODE Download track Download number_of_intervals 23,820 bp_covered 1,113,166 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR013CTQ biological_replicate 2 technical_replicate 2_1 antibody EXOSC5 assay eCLIP file_format bed narrowPeak file_size 365,620 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF140TMZ.bed.gz processed_file_md5 85a9106cc45a026a209ab587223f8115 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF140TMZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF140TMZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF140TMZ/@@download/ENCFF140TMZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF140TMZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 76f55d240b922dea03347a5449c8bc87 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32728246;External_resources=GEO:GSE176645;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2017-11-19;Submitted_track_name=491_02.basedon_491_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) eCLIP EXOSC5 peaks (narrowPeak) [Experiment: ENCSR013CTQ] [Life stage: Adult] [RNA binding]
EXOSC5 • HepG2 NGENCYL6NK7OVI • ENCODE22955616 | 41168159 | 31713622 eCLIP HepG2 RNA binding Show metadata Download track Track metadata identifier NGENCYL6NK7OVI data_source ENCODE Download track Download number_of_intervals 3,398 bp_covered 192,063 output_type peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR693JWP biological_replicate 2 technical_replicate 2_1 antibody EXOSC5 assay eCLIP file_format bed narrowPeak file_size 54,954 downloaded_date 06/10/2020 release_date 04/29/2018 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF347UPZ.bed.gz processed_file_md5 7d7a9a151ae3daab908f05c0788a20c9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF347UPZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF347UPZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF347UPZ/@@download/ENCFF347UPZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF347UPZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6b1166131f4fda3f28b99f9e00016474 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=GEO:GSE177775;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2018-08-30;Submitted_track_name=722_02.basedon_722_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) eCLIP EXOSC5 peaks (narrowPeak) [Experiment: ENCSR693JWP] [Life stage: Child] [RNA binding]
EZH2 • B cell NGENC25KC3UEQU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq B cell TF Show metadata Download track Track metadata identifier NGENC25KC3UEQU data_source ENCODE Download track Download number_of_intervals 1,637 bp_covered 693,722 output_type conservative IDR thresholded peaks genome_build hg38 cell_type B cell biosample_type Primary cell biosample_term_id CL:0000236 tissue_category Immune encode_experiment_id ENCSR000AUZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EZH2 assay TF ChIP-seq file_format bed narrowPeak file_size 31,677 downloaded_date 06/12/2022 release_date 01/05/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF952UJB.bed.gz processed_file_md5 17d346c18a7eebe657115f329f37dcfa wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF952UJB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF952UJB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF952UJB/@@download/ENCFF952UJB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF952UJB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 061db04922a449dea18516c34a2a6556 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens B cell female adult (27 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 27 years;Reference=NR;External_resources=GEO:GSM1003470,UCSC-ENCODE-hg19:wgEncodeEH003135;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=B cell;ENCODE_cell_slims=hematopoietic cell,B cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=B-cell,B-lymphocyte,B lymphocyte;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000236;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name ENCODE B cell (repl. 1, 2) TF ChIP-seq EZH2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000AUZ] [Life stage: Adult] [TF ChIP-seq peaks]
EZH2 • DND-41 NGENC276VFHABX • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq DND-41 TF Show metadata Download track Track metadata identifier NGENC276VFHABX data_source ENCODE Download track Download number_of_intervals 4,138 bp_covered 2,147,835 output_type IDR thresholded peaks genome_build hg38 cell_type DND-41 biosample_type Cell line biosample_term_id EFO:0007074 tissue_category Blood encode_experiment_id ENCSR000ASW biological_replicate 3 technical_replicate 3_1 antibody EZH2 assay TF ChIP-seq file_format bed narrowPeak file_size 70,142 downloaded_date 06/12/2022 release_date 12/12/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF690SMR.bed.gz processed_file_md5 67eb3090702fe897a6d5704f3161c1bf wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF690SMR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF690SMR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF690SMR/@@download/ENCFF690SMR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF690SMR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6622945a597cfa21ee3391cd8bc74adb data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens DND-41;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 13 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH003080,GEO:GSM1003522;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06,2012-03-06;Submitted_track_name=rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=DND-41;ENCODE_cell_slims=hematopoietic cell,T cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=ACC525;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007074;is_hg38_lifted=no system_category Cardiovascular life_stage Child track_name ENCODE DND-41 (repl. 3) TF ChIP-seq EZH2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000ASW] [Life stage: Child] [TF ChIP-seq peaks]
EZH2 • Fibroblast NGENC27ZVYZU6L • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Fibroblast TF Show metadata Download track Track metadata identifier NGENC27ZVYZU6L data_source ENCODE Download track Download number_of_intervals 12,594 bp_covered 7,325,685 output_type IDR thresholded peaks genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Lung encode_experiment_id ENCSR000ARO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EZH2 assay TF ChIP-seq file_format bed narrowPeak file_size 238,860 downloaded_date 06/12/2022 release_date 08/13/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF479BAW.bed.gz processed_file_md5 9b69942f444d42a01b295f213948fe0d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF479BAW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF479BAW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF479BAW/@@download/ENCFF479BAW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF479BAW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 671f0ca1064979147803e80e3e26a44c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM1003529,UCSC-ENCODE-hg19:wgEncodeEH002422;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06,2011-02-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=fibroblast of lung;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002553;is_hg38_lifted=no system_category Respiratory life_stage Adult, Child track_name ENCODE Fibroblast (repl. 1, 2) TF ChIP-seq EZH2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000ARO] [Life stage: Adult, Child] [TF ChIP-seq peaks]
EZH2 • Neural cell NGENC3AUGUZBUS • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Neural cell TF Show metadata Download track Track metadata identifier NGENC3AUGUZBUS data_source ENCODE Download track Download number_of_intervals 1,422 bp_covered 781,930 output_type IDR thresholded peaks genome_build hg38 cell_type Neural cell biosample_type In vitro differentiated cells biosample_term_id CL:0002319 tissue_category Brain encode_experiment_id ENCSR511CUH biological_replicate 1 technical_replicate 1_1 antibody EZH2 assay TF ChIP-seq file_format bed narrowPeak file_size 25,323 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF548ZNI.bed.gz processed_file_md5 88ebad31354fee043e3b2554ee54b42f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF548ZNI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF548ZNI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF548ZNI/@@download/ENCFF548ZNI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF548ZNI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6df0f0117afc7ffb4cc87edde0a44ad0 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens neural cell originated from H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE174862;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11,2016-10-25;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neural cell;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system,peripheral nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002319;is_hg38_lifted=no system_category Nervous life_stage Embryonic track_name ENCODE Neural cell (repl. 1) TF ChIP-seq EZH2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR511CUH] [Life stage: Embryonic] [TF ChIP-seq peaks]
EZH2 • Hepatocyte NGENC3LFP2WIRU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Hepatocyte TF Show metadata Download track Track metadata identifier NGENC3LFP2WIRU data_source ENCODE Download track Download number_of_intervals 4,137 bp_covered 3,114,754 output_type IDR thresholded peaks genome_build hg38 cell_type Hepatocyte biosample_type In vitro differentiated cells biosample_term_id CL:0000182 tissue_category Liver encode_experiment_id ENCSR384LYW biological_replicate 2 technical_replicate 2_1 antibody EZH2 assay TF ChIP-seq file_format bed narrowPeak file_size 79,524 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF542TWJ.bed.gz processed_file_md5 665dd23cd4c8fff13a00251d02039ff5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF542TWJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF542TWJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF542TWJ/@@download/ENCFF542TWJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF542TWJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2f3224eab67a6612130c9be1ca60dc41 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens hepatocyte originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,SESCC,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE101027;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-23,2016-04-27;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=hepatocyte;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000182;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name ENCODE Hepatocyte (repl. 2) TF ChIP-seq EZH2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR384LYW] [Life stage: Embryonic] [TF ChIP-seq peaks]