EZH2phosphoT487 • OCI-LY3 NGFTBDC5FK5TIT • Factorbook34755879 Motif finding OCI-LY3 TFBS Show metadata Download track Track metadata identifier NGFTBDC5FK5TIT data_source Factorbook Download track Download number_of_intervals 687 bp_covered 7,557 output_type transcription factor binding sites all genome_build hg38 cell_type OCI-LY3 biosample_type Cell line biosample_term_id EFO:0006710 tissue_category Blood encode_experiment_id ENCSR584ATA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EZH2phosphoT487 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 9,836 downloaded_date 07/10/2024 release_date 02/06/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF654KPP_ADATGASTCAB_sorted.bed.gz processed_file_md5 a70d99234c1c5f20d523ec8c45476042 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF654KPP_ADATGASTCAB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF654KPP_ADATGASTCAB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF654KPP_ADATGASTCAB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF654KPP_ADATGASTCAB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 5e2dbb08053cf47ead2b78a3ab5f750c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens OCI-LY3;Original_cell_type=OCI-LY3;Lab=Bradley Bernstein, Broad;System=skeletal system,immune system;ENCODE_BED_id=ENCFF654KPP;ENCODE_bigBed_id=ENCFF337OPQ;PMID=34755879;Motif_sequence=ADATGASTCAB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0006710;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook OCI-LY3 (repl. 1, 2) Motif finding EZH2phosphoT487 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR584ATA] [Life stage: Adult] [TFBS]
EZH2phosphoT487 • PC-3 NGFTBF3ZPCXSVA • Factorbook34755879 Motif finding PC-3 TFBS Show metadata Download track Track metadata identifier NGFTBF3ZPCXSVA data_source Factorbook Download track Download number_of_intervals 7,900 bp_covered 165,900 output_type transcription factor binding sites all genome_build hg38 cell_type PC-3 biosample_type Cell line biosample_term_id EFO:0002074 tissue_category Male Reproductive encode_experiment_id ENCSR617RSQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EZH2phosphoT487 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 123,420 downloaded_date 07/10/2024 release_date 02/06/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF610KOH_YKCACACACASGCRCGCKCVC_sorted.bed.gz processed_file_md5 c752f719278106b5835ece4749056aa2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF610KOH_YKCACACACASGCRCGCKCVC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF610KOH_YKCACACACASGCRCGCKCVC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF610KOH_YKCACACACASGCRCGCKCVC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF610KOH_YKCACACACASGCRCGCKCVC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6e0e3e0a1a2bfa1988fe910b9fa0acd8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens PC-3;Original_cell_type=PC-3;Lab=Bradley Bernstein, Broad;System=reproductive system;ENCODE_BED_id=ENCFF610KOH;ENCODE_bigBed_id=ENCFF928VSN;PMID=34755879;Motif_sequence=YKCACACACASGCRCGCKCVC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002074;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook PC-3 (repl. 1, 2) Motif finding EZH2phosphoT487 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR617RSQ] [Life stage: Adult] [TFBS]
EZH2phosphoT487 • PC-3 NGFTBHPQAZAEQW • Factorbook34755879 Motif finding PC-3 TFBS Show metadata Download track Track metadata identifier NGFTBHPQAZAEQW data_source Factorbook Download track Download number_of_intervals 127 bp_covered 2,667 output_type transcription factor binding sites significant genome_build hg38 cell_type PC-3 biosample_type Cell line biosample_term_id EFO:0002074 tissue_category Male Reproductive encode_experiment_id ENCSR617RSQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EZH2phosphoT487 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,178 downloaded_date 07/10/2024 release_date 02/06/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF610KOH_YKCACACACASGCRCGCKCVC_filtered.bed.gz processed_file_md5 34247d81506cd7791f7d3a4959ac280e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF610KOH_YKCACACACASGCRCGCKCVC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF610KOH_YKCACACACASGCRCGCKCVC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF610KOH_YKCACACACASGCRCGCKCVC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF610KOH_YKCACACACASGCRCGCKCVC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6e0e3e0a1a2bfa1988fe910b9fa0acd8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens PC-3;Original_cell_type=PC-3;Lab=Bradley Bernstein, Broad;System=reproductive system;ENCODE_BED_id=ENCFF610KOH;ENCODE_bigBed_id=ENCFF928VSN;PMID=34755879;Motif_sequence=YKCACACACASGCRCGCKCVC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002074;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook PC-3 (repl. 1, 2) Motif finding EZH2phosphoT487 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR617RSQ] [Life stage: Adult] [TFBS]
EZH2phosphoT487 • OCI-LY3 NGFTBLHIUSKOCP • Factorbook34755879 Motif finding OCI-LY3 TFBS Show metadata Download track Track metadata identifier NGFTBLHIUSKOCP data_source Factorbook Download track Download number_of_intervals 1,865 bp_covered 27,975 output_type transcription factor binding sites all genome_build hg38 cell_type OCI-LY3 biosample_type Cell line biosample_term_id EFO:0006710 tissue_category Blood encode_experiment_id ENCSR584ATA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EZH2phosphoT487 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 32,749 downloaded_date 07/10/2024 release_date 02/06/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF654KPP_AAWRRRGAASTGARA_sorted.bed.gz processed_file_md5 2b0aeaacd23534825e4d1b7dd2d50560 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF654KPP_AAWRRRGAASTGARA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF654KPP_AAWRRRGAASTGARA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF654KPP_AAWRRRGAASTGARA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF654KPP_AAWRRRGAASTGARA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 583211076640e3f80a43c01b79d3a6cd data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens OCI-LY3;Original_cell_type=OCI-LY3;Lab=Bradley Bernstein, Broad;System=skeletal system,immune system;ENCODE_BED_id=ENCFF654KPP;ENCODE_bigBed_id=ENCFF337OPQ;PMID=34755879;Motif_sequence=AAWRRRGAASTGARA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0006710;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook OCI-LY3 (repl. 1, 2) Motif finding EZH2phosphoT487 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR584ATA] [Life stage: Adult] [TFBS]
EZH2phosphoT487 • Loucy NGFTBLUMBQ72UP • Factorbook34755879 Motif finding Loucy TFBS Show metadata Download track Track metadata identifier NGFTBLUMBQ72UP data_source Factorbook Download track Download number_of_intervals 876 bp_covered 9,636 output_type transcription factor binding sites all genome_build hg38 cell_type Loucy biosample_type Cell line biosample_term_id EFO:0007112 tissue_category Blood encode_experiment_id ENCSR783QUL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EZH2phosphoT487 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 13,346 downloaded_date 07/10/2024 release_date 02/06/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF696ELL_RVAGGAARTDR_sorted.bed.gz processed_file_md5 32f9ea2689ff97bc750fd738f1666212 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF696ELL_RVAGGAARTDR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF696ELL_RVAGGAARTDR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF696ELL_RVAGGAARTDR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF696ELL_RVAGGAARTDR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3c277754f4b324358abc56decdd8be9a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Loucy;Original_cell_type=Loucy;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF696ELL;ENCODE_bigBed_id=ENCFF586BXS;PMID=34755879;Motif_sequence=RVAGGAARTDR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0007112;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Loucy (repl. 1, 2) Motif finding EZH2phosphoT487 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR783QUL] [Life stage: Adult] [TFBS]
EZH2phosphoT487 • GM23248 NGFTBLVYYJKFF3 • Factorbook34755879 Motif finding GM23248 TFBS Show metadata Download track Track metadata identifier NGFTBLVYYJKFF3 data_source Factorbook Download track Download number_of_intervals 3,588 bp_covered 35,880 output_type transcription factor binding sites all genome_build hg38 cell_type GM23248 biosample_type Cell line biosample_term_id EFO:0005723 tissue_category Skin encode_experiment_id ENCSR096KPA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EZH2phosphoT487 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 44,978 downloaded_date 07/10/2024 release_date 03/04/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF796DQA_NWAACCACAD_sorted.bed.gz processed_file_md5 7a1a545ffeba386095baac6f43a47ba1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF796DQA_NWAACCACAD_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF796DQA_NWAACCACAD_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF796DQA_NWAACCACAD.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF796DQA_NWAACCACAD.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e254216f89e6d4f53963147a92b58d1e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM23248;Original_cell_type=GM23248;Lab=Bradley Bernstein, Broad;System=integumental system;ENCODE_BED_id=ENCFF796DQA;ENCODE_bigBed_id=ENCFF506FWX;PMID=34755879;Motif_sequence=NWAACCACAD;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005723;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook GM23248 (repl. 1, 2) Motif finding EZH2phosphoT487 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR096KPA] [Life stage: Adult] [TFBS]
EZH2phosphoT487 • Loucy NGFTBRW5S2IS6M • Factorbook34755879 Motif finding Loucy TFBS Show metadata Download track Track metadata identifier NGFTBRW5S2IS6M data_source Factorbook Download track Download number_of_intervals 1,019 bp_covered 14,266 output_type transcription factor binding sites all genome_build hg38 cell_type Loucy biosample_type Cell line biosample_term_id EFO:0007112 tissue_category Blood encode_experiment_id ENCSR783QUL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EZH2phosphoT487 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 17,803 downloaded_date 07/10/2024 release_date 02/06/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF696ELL_KBHTGTGGTTWNNN_sorted.bed.gz processed_file_md5 c154ce003b21b563ecf710fa2893bfce wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF696ELL_KBHTGTGGTTWNNN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF696ELL_KBHTGTGGTTWNNN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF696ELL_KBHTGTGGTTWNNN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF696ELL_KBHTGTGGTTWNNN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 80ad361e4811d6ea4b58ff8111e41648 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Loucy;Original_cell_type=Loucy;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF696ELL;ENCODE_bigBed_id=ENCFF586BXS;PMID=34755879;Motif_sequence=KBHTGTGGTTWNNN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0007112;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Loucy (repl. 1, 2) Motif finding EZH2phosphoT487 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR783QUL] [Life stage: Adult] [TFBS]
EZH2phosphoT487 • OCI-LY3 NGFTBSKRSTXVUX • Factorbook34755879 Motif finding OCI-LY3 TFBS Show metadata Download track Track metadata identifier NGFTBSKRSTXVUX data_source Factorbook Download track Download number_of_intervals 744 bp_covered 5,952 output_type transcription factor binding sites all genome_build hg38 cell_type OCI-LY3 biosample_type Cell line biosample_term_id EFO:0006710 tissue_category Blood encode_experiment_id ENCSR584ATA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EZH2phosphoT487 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 8,285 downloaded_date 07/10/2024 release_date 02/06/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF654KPP_AACCACAR_sorted.bed.gz processed_file_md5 a09f922332e8645f7146985c87494a71 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF654KPP_AACCACAR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF654KPP_AACCACAR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF654KPP_AACCACAR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF654KPP_AACCACAR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4a7eeace9ab613fe8c9832b9ef9ed2c6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens OCI-LY3;Original_cell_type=OCI-LY3;Lab=Bradley Bernstein, Broad;System=skeletal system,immune system;ENCODE_BED_id=ENCFF654KPP;ENCODE_bigBed_id=ENCFF337OPQ;PMID=34755879;Motif_sequence=AACCACAR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0006710;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook OCI-LY3 (repl. 1, 2) Motif finding EZH2phosphoT487 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR584ATA] [Life stage: Adult] [TFBS]
EZH2phosphoT487 • PC-3 NGFTBYM2LZTX3H • Factorbook34755879 Motif finding PC-3 TFBS Show metadata Download track Track metadata identifier NGFTBYM2LZTX3H data_source Factorbook Download track Download number_of_intervals 835 bp_covered 6,680 output_type transcription factor binding sites all genome_build hg38 cell_type PC-3 biosample_type Cell line biosample_term_id EFO:0002074 tissue_category Male Reproductive encode_experiment_id ENCSR617RSQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EZH2phosphoT487 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 8,663 downloaded_date 07/10/2024 release_date 02/06/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF610KOH_RTGACTCA_sorted.bed.gz processed_file_md5 185464878f166cd9e7ab28043ba48397 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF610KOH_RTGACTCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF610KOH_RTGACTCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF610KOH_RTGACTCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF610KOH_RTGACTCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 abaf0c746d572f657d6eb58f4d7bf0a7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens PC-3;Original_cell_type=PC-3;Lab=Bradley Bernstein, Broad;System=reproductive system;ENCODE_BED_id=ENCFF610KOH;ENCODE_bigBed_id=ENCFF928VSN;PMID=34755879;Motif_sequence=RTGACTCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002074;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook PC-3 (repl. 1, 2) Motif finding EZH2phosphoT487 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR617RSQ] [Life stage: Adult] [TFBS]
FAM120A • HepG2 NGENCDHH4POD3O • ENCODE22955616 | 41168159 | 31713622 eCLIP HepG2 RNA binding Show metadata Download track Track metadata identifier NGENCDHH4POD3O data_source ENCODE Download track Download number_of_intervals 32,505 bp_covered 1,797,124 output_type peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR987NYS biological_replicate 1 technical_replicate 1_1 antibody FAM120A assay eCLIP file_format bed narrowPeak file_size 606,431 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF887RRI.bed.gz processed_file_md5 fae2615c530f57dcbb49ea5314d35524 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF887RRI.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF887RRI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF887RRI/@@download/ENCFF887RRI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF887RRI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 dcff15675a6905a4b40c471f334f3c10 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=RBPImage:FAM120A,GEO:GSE92212;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-11-09;Submitted_track_name=297_01.basedon_297_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) eCLIP FAM120A peaks (narrowPeak) [Experiment: ENCSR987NYS] [Life stage: Child] [RNA binding]
FAM120A • HepG2 NGENCEEVHG4EFM • ENCODE22955616 | 41168159 | 31713622 eCLIP HepG2 RNA binding Show metadata Download track Track metadata identifier NGENCEEVHG4EFM data_source ENCODE Download track Download number_of_intervals 40,703 bp_covered 2,359,931 output_type peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR987NYS biological_replicate 2 technical_replicate 2_1 antibody FAM120A assay eCLIP file_format bed narrowPeak file_size 742,389 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF037CYW.bed.gz processed_file_md5 5713b4fad0c60b51ec681ae08c1b03fb wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF037CYW.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF037CYW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF037CYW/@@download/ENCFF037CYW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF037CYW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1a91e3c7c9cc497238bf00c91706b657 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=RBPImage:FAM120A,GEO:GSE92212;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-11-09;Submitted_track_name=297_02.basedon_297_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) eCLIP FAM120A peaks (narrowPeak) [Experiment: ENCSR987NYS] [Life stage: Child] [RNA binding]
FAM120A • K562 NGENCKXL3PLL2W • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCKXL3PLL2W data_source ENCODE Download track Download number_of_intervals 20,007 bp_covered 1,014,543 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR006OEQ biological_replicate 1 technical_replicate 1_1 antibody FAM120A assay eCLIP file_format bed narrowPeak file_size 366,435 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF984DLZ.bed.gz processed_file_md5 f9890fed9f8772df8f571c9883e90c1f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF984DLZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF984DLZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF984DLZ/@@download/ENCFF984DLZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF984DLZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 18a3589f4a37c252d93b37b00dc5d803 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE91409;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-11-09;Submitted_track_name=279_01.basedon_279_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) eCLIP FAM120A peaks (narrowPeak) [Experiment: ENCSR006OEQ] [Life stage: Adult] [RNA binding]
FAM120A • K562 NGENCTQVWGMFDJ • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCTQVWGMFDJ data_source ENCODE Download track Download number_of_intervals 26,516 bp_covered 1,558,329 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR006OEQ biological_replicate 2 technical_replicate 2_1 antibody FAM120A assay eCLIP file_format bed narrowPeak file_size 516,132 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF116XFB.bed.gz processed_file_md5 4d4492569b86c66bfd85f39b4372eaff wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF116XFB.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF116XFB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF116XFB/@@download/ENCFF116XFB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF116XFB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d89197fce3292c018de512a7049fe586 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE91409;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-11-09;Submitted_track_name=279_02.basedon_279_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) eCLIP FAM120A peaks (narrowPeak) [Experiment: ENCSR006OEQ] [Life stage: Adult] [RNA binding]
FASTKD2 • K562 NGENC2KJLZN2BM • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENC2KJLZN2BM data_source ENCODE Download track Download number_of_intervals 14,934 bp_covered 766,829 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR887FHF biological_replicate 2 technical_replicate 2_1 antibody FASTKD2 assay eCLIP file_format bed narrowPeak file_size 243,363 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF280KMG.bed.gz processed_file_md5 49df0f139e66576714ed187cb5dbb287 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF280KMG.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF280KMG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF280KMG/@@download/ENCFF280KMG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF280KMG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b782da247ab83a58c493701690ccb7e0 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE92134;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-04-26;Submitted_track_name=460_02.basedon_460_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) eCLIP FASTKD2 peaks (narrowPeak) [Experiment: ENCSR887FHF] [Life stage: Adult] [RNA binding]
FASTKD2 • HepG2 NGENCBAOZISL3L • ENCODE22955616 | 41168159 | 31713622 eCLIP HepG2 RNA binding Show metadata Download track Track metadata identifier NGENCBAOZISL3L data_source ENCODE Download track Download number_of_intervals 29,752 bp_covered 1,625,746 output_type peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR023UHL biological_replicate 1 technical_replicate 1_1 antibody FASTKD2 assay eCLIP file_format bed narrowPeak file_size 572,861 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF530DLQ.bed.gz processed_file_md5 3d4e38f4a7b531bc63ad9f6e4df5e385 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF530DLQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF530DLQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF530DLQ/@@download/ENCFF530DLQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF530DLQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9b139a70569a43afe4f3fe16f62143f0 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=RBPImage:FASTKD2,GEO:GSE91423;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-08-19;Submitted_track_name=649_01.basedon_649_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) eCLIP FASTKD2 peaks (narrowPeak) [Experiment: ENCSR023UHL] [Life stage: Child] [RNA binding]
FASTKD2 • K562 NGENCIDAAPLM3E • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCIDAAPLM3E data_source ENCODE Download track Download number_of_intervals 8,891 bp_covered 426,673 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR887FHF biological_replicate 1 technical_replicate 1_1 antibody FASTKD2 assay eCLIP file_format bed narrowPeak file_size 144,244 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF025IFV.bed.gz processed_file_md5 da514ddbe96d7f6a0e6a9797fab92992 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF025IFV.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF025IFV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF025IFV/@@download/ENCFF025IFV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF025IFV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1449d1f05ccc52ea146b641182282413 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE92134;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-04-26;Submitted_track_name=460_01.basedon_460_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) eCLIP FASTKD2 peaks (narrowPeak) [Experiment: ENCSR887FHF] [Life stage: Adult] [RNA binding]
FASTKD2 • HepG2 NGENCV53IWTLDS • ENCODE22955616 | 41168159 | 31713622 eCLIP HepG2 RNA binding Show metadata Download track Track metadata identifier NGENCV53IWTLDS data_source ENCODE Download track Download number_of_intervals 14,157 bp_covered 757,559 output_type peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR023UHL biological_replicate 2 technical_replicate 2_1 antibody FASTKD2 assay eCLIP file_format bed narrowPeak file_size 244,309 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF776JXK.bed.gz processed_file_md5 ea556650655538b1bdf0cbffeb5fda48 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF776JXK.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF776JXK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF776JXK/@@download/ENCFF776JXK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF776JXK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 027835a631eafc163e31e3f7813344b3 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=RBPImage:FASTKD2,GEO:GSE91423;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-08-19;Submitted_track_name=649_02.basedon_649_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) eCLIP FASTKD2 peaks (narrowPeak) [Experiment: ENCSR023UHL] [Life stage: Child] [RNA binding]
FBXL19 • HepG2 NGENC7X25IU6I4 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENC7X25IU6I4 data_source ENCODE Download track Download number_of_intervals 6,919 bp_covered 2,694,719 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR941WVJ biological_replicate 1 technical_replicate 1_1 antibody FBXL19 assay TF ChIP-seq file_format bed narrowPeak file_size 130,351 downloaded_date 07/10/2025 release_date 12/19/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF585KXW.bed.gz processed_file_md5 dbd63ea182df5f10b7f7510334d2fa6b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF585KXW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF585KXW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF585KXW/@@download/ENCFF585KXW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF585KXW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4a5047329742308725bc819f17e8bddc data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FBXL19;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231237;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2023-01-06,2022-07-25;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq FBXL19 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR941WVJ] [Life stage: Child] [TF ChIP-seq peaks]
FBXL19 • HepG2 NGENCGJM6R7JSP • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCGJM6R7JSP data_source ENCODE Download track Download number_of_intervals 14,020 bp_covered 6,386,689 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR941WVJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FBXL19 assay TF ChIP-seq file_format bed narrowPeak file_size 271,921 downloaded_date 07/10/2025 release_date 12/19/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF127ONN.bed.gz processed_file_md5 f858e876b264abbc88c0cbf8a27352d4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF127ONN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF127ONN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF127ONN/@@download/ENCFF127ONN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF127ONN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f2c9e3947203df44b490c6b92aa1a00b data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FBXL19;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231237;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2023-01-06,2022-07-25;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq FBXL19 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR941WVJ] [Life stage: Child] [TF ChIP-seq peaks]
FBXL19 • HepG2 NGENCKLIXMDXHU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCKLIXMDXHU data_source ENCODE Download track Download number_of_intervals 13,073 bp_covered 5,954,857 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR941WVJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FBXL19 assay TF ChIP-seq file_format bed narrowPeak file_size 253,644 downloaded_date 07/10/2025 release_date 12/19/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF777SVL.bed.gz processed_file_md5 e4903e9a5dd430ec5051b6f44a89fa34 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF777SVL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF777SVL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF777SVL/@@download/ENCFF777SVL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF777SVL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 06cebdd4f44b25a8ad8ac060320de6cc data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FBXL19;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231237;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2023-01-06,2022-07-25;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq FBXL19 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR941WVJ] [Life stage: Child] [TF ChIP-seq peaks]