FBXL19 • HepG2 NGENCZYIGRYHOJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCZYIGRYHOJ data_source ENCODE Download track Download number_of_intervals 7,479 bp_covered 3,763,204 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR941WVJ biological_replicate 2 technical_replicate 2_1 antibody FBXL19 assay TF ChIP-seq file_format bed narrowPeak file_size 142,225 downloaded_date 07/10/2025 release_date 12/19/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF019IBU.bed.gz processed_file_md5 2f7457c1d5f7091ca74b571d2c5670d3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF019IBU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF019IBU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF019IBU/@@download/ENCFF019IBU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF019IBU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 20006c2d9f2e1a4b8d45f67a085dd4d8 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FBXL19;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231237;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2023-01-06,2022-07-25;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq FBXL19 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR941WVJ] [Life stage: Child] [TF ChIP-seq peaks]
FEZF1 • HEK293 NGENCEDQXLSLWW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENCEDQXLSLWW data_source ENCODE Download track Download number_of_intervals 26,161 bp_covered 9,342,538 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR827NWO biological_replicate 1 technical_replicate 1_1 antibody FEZF1 assay TF ChIP-seq file_format bed narrowPeak file_size 501,199 downloaded_date 06/12/2022 release_date 08/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF269ZYU.bed.gz processed_file_md5 50226b1de682ca61cbdde66df7e9b72f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF269ZYU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF269ZYU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF269ZYU/@@download/ENCFF269ZYU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF269ZYU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 77d40fdd595ef877cba294aa814c2534 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens FEZF1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE92085,FactorBook:ENCSR827NWO;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-14,2016-10-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 1) TF ChIP-seq FEZF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR827NWO] [Life stage: Embryonic] [TF ChIP-seq peaks]
FEZF1 • HEK293 NGENCPPJDKFEYF • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENCPPJDKFEYF data_source ENCODE Download track Download number_of_intervals 31,428 bp_covered 11,920,267 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR827NWO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FEZF1 assay TF ChIP-seq file_format bed narrowPeak file_size 606,675 downloaded_date 06/12/2022 release_date 08/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF528YED.bed.gz processed_file_md5 860091b0b171a9f82df4d8c59f80df42 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF528YED.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF528YED.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF528YED/@@download/ENCFF528YED.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF528YED.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4904d561878ebf124a7398a30d1138f5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens FEZF1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE92085,FactorBook:ENCSR827NWO;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-14,2016-10-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 1, 2) TF ChIP-seq FEZF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR827NWO] [Life stage: Embryonic] [TF ChIP-seq peaks]
FEZF1 • HEK293 NGENCQKXB3XZRS • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENCQKXB3XZRS data_source ENCODE Download track Download number_of_intervals 19,683 bp_covered 7,545,320 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR827NWO biological_replicate 2 technical_replicate 2_1 antibody FEZF1 assay TF ChIP-seq file_format bed narrowPeak file_size 383,063 downloaded_date 06/12/2022 release_date 08/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF827AZJ.bed.gz processed_file_md5 7b377f9530fd4858980230cb0228d7a4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF827AZJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF827AZJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF827AZJ/@@download/ENCFF827AZJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF827AZJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 45cec7535de2e12dc25cd3b8e669a760 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens FEZF1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE92085,FactorBook:ENCSR827NWO;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-14,2016-10-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 2) TF ChIP-seq FEZF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR827NWO] [Life stage: Embryonic] [TF ChIP-seq peaks]
FEZF1 • HEK293 NGENCZ4HBESXBU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENCZ4HBESXBU data_source ENCODE Download track Download number_of_intervals 29,416 bp_covered 11,085,140 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR827NWO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FEZF1 assay TF ChIP-seq file_format bed narrowPeak file_size 567,775 downloaded_date 06/12/2022 release_date 08/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF846UPE.bed.gz processed_file_md5 91cdf281027c07994a4ac3dcbc7b8d3a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF846UPE.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF846UPE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF846UPE/@@download/ENCFF846UPE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF846UPE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 52dd1e42e5ad45ea2cde0235fc7df81c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens FEZF1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE92085,FactorBook:ENCSR827NWO;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-14,2016-10-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 1, 2) TF ChIP-seq FEZF1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR827NWO] [Life stage: Embryonic] [TF ChIP-seq peaks]
FEZF1 • HEK293 NGFTBDGGN4Q6AR • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTBDGGN4Q6AR data_source Factorbook Download track Download number_of_intervals 9,297 bp_covered 92,970 output_type transcription factor binding sites all genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR827NWO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FEZF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 112,858 downloaded_date 07/10/2024 release_date 10/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF850UEN_RAAADGGCWR_sorted.bed.gz processed_file_md5 d3967084a51b8dcdcefe0d05ba9c9caf wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF850UEN_RAAADGGCWR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF850UEN_RAAADGGCWR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF850UEN_RAAADGGCWR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF850UEN_RAAADGGCWR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 fa0ee3e8a76788585a03e0be6d5c8503 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens FEZF1;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF850UEN;ENCODE_bigBed_id=ENCFF528YED;PMID=34755879;Motif_sequence=RAAADGGCWR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding FEZF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR827NWO] [TFBS]
FEZF1 • HEK293 NGFTBL4OWZVNXV • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTBL4OWZVNXV data_source Factorbook Download track Download number_of_intervals 32,782 bp_covered 360,602 output_type transcription factor binding sites all genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR827NWO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FEZF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 306,437 downloaded_date 07/10/2024 release_date 10/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF850UEN_AAAAHAAACAM_sorted.bed.gz processed_file_md5 22fdf88f998b3e67f8f56abb3fdc427e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF850UEN_AAAAHAAACAM_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF850UEN_AAAAHAAACAM_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF850UEN_AAAAHAAACAM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF850UEN_AAAAHAAACAM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 fe43fc2ab2f166b04dcf7e59872c3933 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens FEZF1;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF850UEN;ENCODE_bigBed_id=ENCFF528YED;PMID=34755879;Motif_sequence=AAAAHAAACAM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding FEZF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR827NWO] [TFBS]
FEZF1 • HEK293 NGFTBQNL4MNQ55 • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTBQNL4MNQ55 data_source Factorbook Download track Download number_of_intervals 5,415 bp_covered 43,320 output_type transcription factor binding sites all genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR827NWO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FEZF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 52,036 downloaded_date 07/10/2024 release_date 10/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF850UEN_TTTATGRS_sorted.bed.gz processed_file_md5 4b7662fdff45ff1599834937aee86ae7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF850UEN_TTTATGRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF850UEN_TTTATGRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF850UEN_TTTATGRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF850UEN_TTTATGRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 742057fa5069d15a6b62d7dc38c75c0d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens FEZF1;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF850UEN;ENCODE_bigBed_id=ENCFF528YED;PMID=34755879;Motif_sequence=TTTATGRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding FEZF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR827NWO] [TFBS]
FIP1L1 • K562 NGENC2S2DLVSIH • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC2S2DLVSIH data_source ENCODE Download track Download number_of_intervals 9,983 bp_covered 5,395,584 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR177DNR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FIP1L1 assay TF ChIP-seq file_format bed narrowPeak file_size 177,297 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF982BGT.bed.gz processed_file_md5 918bb4d7c7931efe4c210c36ab8fdf78 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF982BGT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF982BGT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF982BGT/@@download/ENCFF982BGT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF982BGT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 88c306f89063fae959a09375a0ed2205 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Xiang-Dong Fu, UCSD;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,ENCORE;Life_stage_age=adult 53 years;Reference=PMID:32728246;External_resources=GEO:GSE175054;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2018-01-16,2017-02-02;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq FIP1L1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR177DNR] [Life stage: Adult] [TF ChIP-seq peaks]
FIP1L1 • HepG2 NGENCCDDJLF7IF • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCCDDJLF7IF data_source ENCODE Download track Download number_of_intervals 492 bp_covered 164,648 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR313VZG biological_replicate 2 technical_replicate 2_1 antibody FIP1L1 assay TF ChIP-seq file_format bed narrowPeak file_size 9,252 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF996KDK.bed.gz processed_file_md5 052337900fd8d2640061eed479e9c7df wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF996KDK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF996KDK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF996KDK/@@download/ENCFF996KDK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF996KDK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 576cb1acd92b9cd5ee7fbcb2de060ce5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Xiang-Dong Fu, UCSD;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,ENCORE;Life_stage_age=child 15 years;Reference=PMID:32728246;External_resources=GEO:GSE175166;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2018-01-19,2017-02-17;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq FIP1L1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR313VZG] [Life stage: Child] [TF ChIP-seq peaks]
FIP1L1 • HepG2 NGENCGTD67ZS7T • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCGTD67ZS7T data_source ENCODE Download track Download number_of_intervals 3,445 bp_covered 1,402,216 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR313VZG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FIP1L1 assay TF ChIP-seq file_format bed narrowPeak file_size 61,863 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF015CFL.bed.gz processed_file_md5 5d60ee7114876ea1707bf1761fb22dd8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF015CFL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF015CFL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF015CFL/@@download/ENCFF015CFL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF015CFL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fa0da21db35157bd26057849eac1d121 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Xiang-Dong Fu, UCSD;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,ENCORE;Life_stage_age=child 15 years;Reference=PMID:32728246;External_resources=GEO:GSE175166;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2018-01-19,2017-02-17;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq FIP1L1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR313VZG] [Life stage: Child] [TF ChIP-seq peaks]
FIP1L1 • HepG2 NGENCKAGUP3EIB • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCKAGUP3EIB data_source ENCODE Download track Download number_of_intervals 1,940 bp_covered 902,047 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR313VZG biological_replicate 1 technical_replicate 1_1 antibody FIP1L1 assay TF ChIP-seq file_format bed narrowPeak file_size 34,528 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF017VER.bed.gz processed_file_md5 ab9fe91f51bf67a26a969cda3b7f514c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF017VER.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF017VER.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF017VER/@@download/ENCFF017VER.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF017VER.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 de6fdfaa26151cb9e0aae17aa64d6147 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Xiang-Dong Fu, UCSD;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,ENCORE;Life_stage_age=child 15 years;Reference=PMID:32728246;External_resources=GEO:GSE175166;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2018-01-19,2017-02-17;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq FIP1L1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR313VZG] [Life stage: Child] [TF ChIP-seq peaks]
FIP1L1 • K562 NGENCRJNTK3PXA • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCRJNTK3PXA data_source ENCODE Download track Download number_of_intervals 4,510 bp_covered 2,307,066 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR177DNR biological_replicate 2 technical_replicate 2_1 antibody FIP1L1 assay TF ChIP-seq file_format bed narrowPeak file_size 79,500 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF035WSF.bed.gz processed_file_md5 927c1160ed4c2fd63ed0b90077eba696 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF035WSF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF035WSF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF035WSF/@@download/ENCFF035WSF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF035WSF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5c16a7163d879e9dc8561078efa291bf data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Xiang-Dong Fu, UCSD;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,ENCORE;Life_stage_age=adult 53 years;Reference=PMID:32728246;External_resources=GEO:GSE175054;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2018-01-16,2017-02-02;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq FIP1L1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR177DNR] [Life stage: Adult] [TF ChIP-seq peaks]
FIP1L1 • HepG2 NGENCT7GFF6TG7 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCT7GFF6TG7 data_source ENCODE Download track Download number_of_intervals 1,771 bp_covered 716,106 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR313VZG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FIP1L1 assay TF ChIP-seq file_format bed narrowPeak file_size 31,912 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF211FPA.bed.gz processed_file_md5 7d65955ff948e14f06032b006f71262c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF211FPA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF211FPA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF211FPA/@@download/ENCFF211FPA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF211FPA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e915b12f2812d25d3e5121b791cbdcb8 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Xiang-Dong Fu, UCSD;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,ENCORE;Life_stage_age=child 15 years;Reference=PMID:32728246;External_resources=GEO:GSE175166;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2018-01-19,2017-02-17;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq FIP1L1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR313VZG] [Life stage: Child] [TF ChIP-seq peaks]
FIP1L1 • HepG2 NGENCUVQB4ZXGP • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCUVQB4ZXGP data_source ENCODE Download track Download number_of_intervals 3,551 bp_covered 1,480,260 output_type optimal IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR313VZG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FIP1L1 assay TF ChIP-seq file_format bed narrowPeak file_size 64,346 downloaded_date 06/04/2018 release_date 01/09/2018 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF844GGM.bed.gz processed_file_md5 4c9e078d17a9ba9f15c7ccf6fbf7c68a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF844GGM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF844GGM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF844GGM/@@download/ENCFF844GGM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF844GGM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 55ea7149a4a704fe56b2e30c237904ef data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq optimal IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Xiang-Dong Fu, UCSD;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,ENCORE;Life_stage_age=child 15 years;Reference=PMID:32728246;External_resources=GEO:GSE175166;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2018-01-19,2017-02-17;Submitted_track_name=IDR_final_optimal.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE3 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq FIP1L1 optimal IDR thresholded peaks (narrowPeak) [Experiment: ENCSR313VZG] [Life stage: Child] [TF ChIP-seq peaks]
FIP1L1 • K562 NGENCWORJVG23S • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCWORJVG23S data_source ENCODE Download track Download number_of_intervals 10,447 bp_covered 5,591,929 output_type optimal IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR177DNR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FIP1L1 assay TF ChIP-seq file_format bed narrowPeak file_size 182,093 downloaded_date 06/04/2018 release_date 01/10/2018 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF002WKI.bed.gz processed_file_md5 f0f66caa47a35d764884721788757f1e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF002WKI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF002WKI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF002WKI/@@download/ENCFF002WKI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF002WKI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6bf038b588cec36d0726f53ce3ad0fc5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq optimal IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Xiang-Dong Fu, UCSD;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,ENCORE;Life_stage_age=adult 53 years;Reference=PMID:32728246;External_resources=GEO:GSE175054;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2018-01-16,2017-02-02;Submitted_track_name=IDR_final_optimal.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE3 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq FIP1L1 optimal IDR thresholded peaks (narrowPeak) [Experiment: ENCSR177DNR] [Life stage: Adult] [TF ChIP-seq peaks]
FIP1L1 • K562 NGENCY2IRICR2G • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCY2IRICR2G data_source ENCODE Download track Download number_of_intervals 4,524 bp_covered 2,489,766 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR177DNR biological_replicate 1 technical_replicate 1_1 antibody FIP1L1 assay TF ChIP-seq file_format bed narrowPeak file_size 79,279 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF778DEZ.bed.gz processed_file_md5 6c942b6b028b6d7e3645e595f2fbc6cd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF778DEZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF778DEZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF778DEZ/@@download/ENCFF778DEZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF778DEZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d5e2618d554b46507ccf0af1a523ead6 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Xiang-Dong Fu, UCSD;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,ENCORE;Life_stage_age=adult 53 years;Reference=PMID:32728246;External_resources=GEO:GSE175054;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2018-01-16,2017-02-02;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq FIP1L1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR177DNR] [Life stage: Adult] [TF ChIP-seq peaks]
FIP1L1 • K562 NGENCY3NQKHWJK • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCY3NQKHWJK data_source ENCODE Download track Download number_of_intervals 10,437 bp_covered 5,641,952 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR177DNR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FIP1L1 assay TF ChIP-seq file_format bed narrowPeak file_size 184,983 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF363ZMN.bed.gz processed_file_md5 f51ff748a11c1a7f9c6b739f587846ac wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF363ZMN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF363ZMN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF363ZMN/@@download/ENCFF363ZMN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF363ZMN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0eebc5cae5b1e9951aea346e63686233 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Xiang-Dong Fu, UCSD;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,ENCORE;Life_stage_age=adult 53 years;Reference=PMID:32728246;External_resources=GEO:GSE175054;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2018-01-16,2017-02-02;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq FIP1L1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR177DNR] [Life stage: Adult] [TF ChIP-seq peaks]
FKBP4 • HepG2 NGENCDRLH3GEJZ • ENCODE22955616 | 41168159 | 31713622 eCLIP HepG2 RNA binding Show metadata Download track Track metadata identifier NGENCDRLH3GEJZ data_source ENCODE Download track Download number_of_intervals 7,890 bp_covered 404,309 output_type peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR018ZUE biological_replicate 1 technical_replicate 1_1 antibody FKBP4 assay eCLIP file_format bed narrowPeak file_size 116,651 downloaded_date 06/04/2018 release_date 12/02/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF096DJH.bed.gz processed_file_md5 56b2a2a57443e297b5fbfd0cd34e962f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF096DJH.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF096DJH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF096DJH/@@download/ENCFF096DJH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF096DJH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8dfdf2001a264e7e4348c67844ef361b data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=RBPImage:FKBP4,GEO:GSE91418;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-07-15;Submitted_track_name=223_01.basedon_223_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) eCLIP FKBP4 peaks (narrowPeak) [Experiment: ENCSR018ZUE] [Life stage: Child] [RNA binding]
FKBP4 • HepG2 NGENCNZUAFNYW6 • ENCODE22955616 | 41168159 | 31713622 eCLIP HepG2 RNA binding Show metadata Download track Track metadata identifier NGENCNZUAFNYW6 data_source ENCODE Download track Download number_of_intervals 10,101 bp_covered 534,588 output_type peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR018ZUE biological_replicate 2 technical_replicate 2_1 antibody FKBP4 assay eCLIP file_format bed narrowPeak file_size 155,192 downloaded_date 06/04/2018 release_date 12/02/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF006UHG.bed.gz processed_file_md5 a564c93b904789440b24914738ae94ae wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF006UHG.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF006UHG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF006UHG/@@download/ENCFF006UHG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF006UHG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 31b021ee8194641938fea9ba53ff7de7 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=RBPImage:FKBP4,GEO:GSE91418;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-07-15;Submitted_track_name=223_02.basedon_223_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) eCLIP FKBP4 peaks (narrowPeak) [Experiment: ENCSR018ZUE] [Life stage: Child] [RNA binding]