Reference annotation (FLI) NGHOM4QLRN67UT • HOMER20513432 Motif finding Reference annotation (FLI) TFBS Show metadata Download track Track metadata identifier NGHOM4QLRN67UT data_source HOMER Download track Download number_of_intervals 1,228,031 bp_covered 12,280,310 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody FLI assay Motif finding file_format bed bed6+5 Homer file_size 12,370,965 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Fli1_ETS.hg38.processed.bed.gz processed_file_md5 544f123414e44ec18c5b035bacf93f77 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Fli1_ETS.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Fli1_ETS.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=Fli1;DNA_binding_domain=ETS;Cell_type=CD8;Assay=ChIP-Seq;Origin=GSE20898;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding FLI transcription factor binding sites (bed6+5 Homer) [TFBS]
FLYWCH1 • HepG2 NGENCERBCAFSMN • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCERBCAFSMN data_source ENCODE Download track Download number_of_intervals 2,373 bp_covered 1,124,575 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR440OJH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FLYWCH1 assay TF ChIP-seq file_format bed narrowPeak file_size 48,397 downloaded_date 07/10/2025 release_date 12/21/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF073KNY.bed.gz processed_file_md5 f9259aecacf0679cfb121c72bb77d429 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF073KNY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF073KNY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF073KNY/@@download/ENCFF073KNY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF073KNY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3b0cf198bc15a191eb97d1ceead6c9be data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FLYWCH1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231179;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2023-01-06,2022-12-20;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq FLYWCH1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR440OJH] [Life stage: Child] [TF ChIP-seq peaks]
FLYWCH1 • HepG2 NGENCFX2ORWHJ7 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCFX2ORWHJ7 data_source ENCODE Download track Download number_of_intervals 2,007 bp_covered 889,197 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR440OJH biological_replicate 2 technical_replicate 2_1 antibody FLYWCH1 assay TF ChIP-seq file_format bed narrowPeak file_size 40,917 downloaded_date 07/10/2025 release_date 12/21/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF669PRZ.bed.gz processed_file_md5 054f198dc7223626c343343e2c49a1ba wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF669PRZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF669PRZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF669PRZ/@@download/ENCFF669PRZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF669PRZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 12f9112b4136b64c4235b301f26d72b1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FLYWCH1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231179;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2023-01-06,2022-12-20;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq FLYWCH1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR440OJH] [Life stage: Child] [TF ChIP-seq peaks]
FLYWCH1 • HepG2 NGENCKKYO67OFK • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCKKYO67OFK data_source ENCODE Download track Download number_of_intervals 1,059 bp_covered 621,304 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR440OJH biological_replicate 1 technical_replicate 1_1 antibody FLYWCH1 assay TF ChIP-seq file_format bed narrowPeak file_size 21,820 downloaded_date 07/10/2025 release_date 12/21/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF297NDI.bed.gz processed_file_md5 c197ce0ea26d862bfc994ee7de84deab wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF297NDI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF297NDI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF297NDI/@@download/ENCFF297NDI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF297NDI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 070898bd4de06112169592c493334714 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FLYWCH1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231179;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2023-01-06,2022-12-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq FLYWCH1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR440OJH] [Life stage: Child] [TF ChIP-seq peaks]
FLYWCH1 • HepG2 NGENCXMVRL4RKO • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCXMVRL4RKO data_source ENCODE Download track Download number_of_intervals 4,020 bp_covered 1,908,547 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR440OJH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FLYWCH1 assay TF ChIP-seq file_format bed narrowPeak file_size 80,940 downloaded_date 07/10/2025 release_date 12/21/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF253QCC.bed.gz processed_file_md5 edb2e22298447cf33d6ddede6c7cbe59 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF253QCC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF253QCC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF253QCC/@@download/ENCFF253QCC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF253QCC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f00758a5bb781253ea7f8536cb082c63 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FLYWCH1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231179;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2023-01-06,2022-12-20;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq FLYWCH1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR440OJH] [Life stage: Child] [TF ChIP-seq peaks]
FMR1 • K562 NGENC6JWC27A3I • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENC6JWC27A3I data_source ENCODE Download track Download number_of_intervals 18,781 bp_covered 971,432 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR331VNX biological_replicate 1 technical_replicate 1_1 antibody FMR1 assay eCLIP file_format bed narrowPeak file_size 329,816 downloaded_date 06/04/2018 release_date 12/02/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF377LAA.bed.gz processed_file_md5 492e2947c7381d6152a92784503949a0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF377LAA.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF377LAA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF377LAA/@@download/ENCFF377LAA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF377LAA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 917bd92e725ac4b6b11aa9ecb9fefb8f data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE91670;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-07-15;Submitted_track_name=236_01.basedon_236_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) eCLIP FMR1 peaks (narrowPeak) [Experiment: ENCSR331VNX] [Life stage: Adult] [RNA binding]
FMR1 • K562 NGENCAVVFC6LOD • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCAVVFC6LOD data_source ENCODE Download track Download number_of_intervals 26,295 bp_covered 1,488,533 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR554UVB biological_replicate 1 technical_replicate 1_1 antibody FMR1 assay eCLIP file_format bed narrowPeak file_size 434,928 downloaded_date 05/15/2024 release_date 01/13/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF944YNX.bed.gz processed_file_md5 015f06764efc54e7a9a6acb4f3a64de6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF944YNX.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF944YNX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF944YNX/@@download/ENCFF944YNX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF944YNX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d8d7189f6aa2d0571f4eb280160bd4f7 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284916;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2022-07-19;Submitted_track_name=encode4_batch16.4030_CLIP1_CLIP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.sorted.blacklist-removed.nh.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38 V29;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) eCLIP FMR1 peaks (narrowPeak) [Experiment: ENCSR554UVB] [Life stage: Adult] [RNA binding]
FMR1 • K562 NGENCFFEM4BEAZ • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCFFEM4BEAZ data_source ENCODE Download track Download number_of_intervals 21,170 bp_covered 1,400,643 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR554UVB biological_replicate 2 technical_replicate 2_1 antibody FMR1 assay eCLIP file_format bed narrowPeak file_size 366,526 downloaded_date 05/15/2024 release_date 01/13/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF320MZQ.bed.gz processed_file_md5 046dbc598047a583c9dd735bc8399888 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF320MZQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF320MZQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF320MZQ/@@download/ENCFF320MZQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF320MZQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 148231f3bdaa5b7a33012186f8dc9768 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284916;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2022-07-19;Submitted_track_name=encode4_batch16.4030_CLIP2_CLIP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.sorted.blacklist-removed.nh.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38 V29;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) eCLIP FMR1 peaks (narrowPeak) [Experiment: ENCSR554UVB] [Life stage: Adult] [RNA binding]
FMR1 • K562 NGENCIBR24CNCO • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCIBR24CNCO data_source ENCODE Download track Download number_of_intervals 4,445 bp_covered 273,544 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR554UVB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FMR1 assay eCLIP file_format bed narrowPeak file_size 103,945 downloaded_date 05/15/2024 release_date 02/01/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF543KQW.bed.gz processed_file_md5 4e98e4bd19fa47f0f15d90025b7c502a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF543KQW.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF543KQW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF543KQW/@@download/ENCFF543KQW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF543KQW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 63b161e4c328efe6078faa5d7e41d18f data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284916;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2022-07-19;Submitted_track_name=4030_CLIP1_rep1.vs.4030_CLIP2_rep2.sorted.nh.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38 V29;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) eCLIP FMR1 peaks (narrowPeak) [Experiment: ENCSR554UVB] [Life stage: Adult] [RNA binding]
FMR1 • K562 NGENCSP6QEUBNF • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCSP6QEUBNF data_source ENCODE Download track Download number_of_intervals 22,202 bp_covered 1,156,296 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR331VNX biological_replicate 2 technical_replicate 2_1 antibody FMR1 assay eCLIP file_format bed narrowPeak file_size 367,548 downloaded_date 06/04/2018 release_date 12/02/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF337OXN.bed.gz processed_file_md5 b56e54fee1dfa84de6908b9803daa0a9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF337OXN.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF337OXN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF337OXN/@@download/ENCFF337OXN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF337OXN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6214be61667e114b4b60dd8217e57363 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE91670;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-07-15;Submitted_track_name=236_02.basedon_236_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) eCLIP FMR1 peaks (narrowPeak) [Experiment: ENCSR331VNX] [Life stage: Adult] [RNA binding]
FOS • MCF 10A NGENC24VI2VEXL • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF 10A TF Show metadata Download track Track metadata identifier NGENC24VI2VEXL data_source ENCODE Download track Download number_of_intervals 104,168 bp_covered 20,882,590 output_type IDR thresholded peaks genome_build hg38 cell_type MCF 10A biosample_type Cell line biosample_term_id EFO:0001200 tissue_category Breast encode_experiment_id ENCSR000DOP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOS assay TF ChIP-seq file_format bed narrowPeak file_size 1,722,267 downloaded_date 09/10/2024 release_date 12/27/2020 date_added_to_filer 10/01/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF124AQH.bed.gz processed_file_md5 e5b3e007c922a9ce48c417b5b15538ba wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF124AQH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF124AQH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF124AQH/@@download/ENCFF124AQH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF124AQH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d67209599dbe6fd899eda25748c174a8 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF 10A stably expressing SRC treated with 1 _M afimoxifene for 12 hours;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 36 years;Reference=NR;External_resources=GEO:GSM935398,UCSC-ENCODE-hg19:wgEncodeEH002837,FactorBook:ENCSR000DOP;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-05-14;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=MCF 10A;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001200;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF 10A (repl. 1, 2) TF ChIP-seq FOS IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOP] [Life stage: Adult] [TF ChIP-seq peaks]
FOS • MCF 10A NGENC3CSXQC5UD • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF 10A TF Show metadata Download track Track metadata identifier NGENC3CSXQC5UD data_source ENCODE Download track Download number_of_intervals 64,426 bp_covered 15,080,357 output_type IDR thresholded peaks genome_build hg38 cell_type MCF 10A biosample_type Cell line biosample_term_id EFO:0001200 tissue_category Breast encode_experiment_id ENCSR000DON biological_replicate 2 technical_replicate 2_1 antibody FOS assay TF ChIP-seq file_format bed narrowPeak file_size 1,048,452 downloaded_date 07/10/2025 release_date 12/26/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF264CGF.bed.gz processed_file_md5 8d070ee2e74d342ed963a31d4486cf39 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF264CGF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF264CGF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF264CGF/@@download/ENCFF264CGF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF264CGF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 705346946b007e1fb774ba51ca08ab53 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF 10A treated with 1 _M afimoxifene for 36 hours;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 36 years;Reference=NR;External_resources=FactorBook:ENCSR000DON,GEO:GSM935396,UCSC-ENCODE-hg19:wgEncodeEH002839;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-05-14;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF 10A;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001200;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF 10A (repl. 2) TF ChIP-seq FOS IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DON] [Life stage: Adult] [TF ChIP-seq peaks]
FOS • MCF-7 NGENC4A2LASEHY • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENC4A2LASEHY data_source ENCODE Download track Download number_of_intervals 48,960 bp_covered 13,921,438 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR569XNP biological_replicate 3 technical_replicate 3_1 antibody FOS assay TF ChIP-seq file_format bed narrowPeak file_size 958,080 downloaded_date 06/12/2022 release_date 12/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF199ZZD.bed.gz processed_file_md5 7daf5aea0a9f9537e0da5e3873cdb3be wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF199ZZD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF199ZZD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF199ZZD/@@download/ENCFF199ZZD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF199ZZD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 408ef80d4aa9697224e92234ec2d3a91 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=NR;External_resources=FactorBook:ENCSR569XNP,GEO:GSE105734;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-12-19,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 3) TF ChIP-seq FOS IDR thresholded peaks (narrowPeak) [Experiment: ENCSR569XNP] [Life stage: Adult] [TF ChIP-seq peaks]
FOS • MCF 10A NGENC4DPUQLTSE • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF 10A TF Show metadata Download track Track metadata identifier NGENC4DPUQLTSE data_source ENCODE Download track Download number_of_intervals 76,784 bp_covered 15,578,862 output_type IDR thresholded peaks genome_build hg38 cell_type MCF 10A biosample_type Cell line biosample_term_id EFO:0001200 tissue_category Breast encode_experiment_id ENCSR000DOT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOS assay TF ChIP-seq file_format bed narrowPeak file_size 1,272,333 downloaded_date 09/10/2024 release_date 12/27/2020 date_added_to_filer 10/01/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF299XJQ.bed.gz processed_file_md5 21b7e0af4c4e84ae2d252a1cb70caa62 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF299XJQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF299XJQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF299XJQ/@@download/ENCFF299XJQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF299XJQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fa028323dc45982d1a09cb76b84a49c8 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF 10A stably expressing SRC treated with 0.01% ethanol for 36 hours;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 36 years;Reference=PMID:32728046;External_resources=GEO:GSM935438,FactorBook:ENCSR000DOT,UCSC-ENCODE-hg19:wgEncodeEH002815;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-05-14;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=MCF 10A;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001200;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF 10A (repl. 1, 2) TF ChIP-seq FOS IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOT] [Life stage: Adult] [TF ChIP-seq peaks]
FOS • MCF 10A NGENC5N425WYWU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF 10A TF Show metadata Download track Track metadata identifier NGENC5N425WYWU data_source ENCODE Download track Download number_of_intervals 76,584 bp_covered 16,400,268 output_type conservative IDR thresholded peaks genome_build hg38 cell_type MCF 10A biosample_type Cell line biosample_term_id EFO:0001200 tissue_category Breast encode_experiment_id ENCSR000DON biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOS assay TF ChIP-seq file_format bed narrowPeak file_size 1,274,229 downloaded_date 07/10/2025 release_date 12/26/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF525YSJ.bed.gz processed_file_md5 571914df4c60d014c9b7d1aa1295a63f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF525YSJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF525YSJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF525YSJ/@@download/ENCFF525YSJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF525YSJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4d5218eb27caf4607e89570d73b0fce3 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF 10A treated with 1 _M afimoxifene for 36 hours;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 36 years;Reference=NR;External_resources=FactorBook:ENCSR000DON,GEO:GSM935396,UCSC-ENCODE-hg19:wgEncodeEH002839;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-05-14;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF 10A;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001200;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF 10A (repl. 1, 2) TF ChIP-seq FOS conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DON] [Life stage: Adult] [TF ChIP-seq peaks]
FOS • MCF-7 NGENC6HHUP4AUM • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENC6HHUP4AUM data_source ENCODE Download track Download number_of_intervals 34,219 bp_covered 13,676,140 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR569XNP biological_replicate 1 technical_replicate 1_1 antibody FOS assay TF ChIP-seq file_format bed narrowPeak file_size 647,864 downloaded_date 06/12/2022 release_date 12/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF385JGV.bed.gz processed_file_md5 7ef954468d4f32bc42f94626013c729c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF385JGV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF385JGV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF385JGV/@@download/ENCFF385JGV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF385JGV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0c3ec1fc9b96e1599e23a664d295cb7e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=NR;External_resources=FactorBook:ENCSR569XNP,GEO:GSE105734;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-12-19,2014-07-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1) TF ChIP-seq FOS IDR thresholded peaks (narrowPeak) [Experiment: ENCSR569XNP] [Life stage: Adult] [TF ChIP-seq peaks]
FOS • WTC11 NGENC7UVMTH3OP • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENC7UVMTH3OP data_source ENCODE Download track Download number_of_intervals 903 bp_covered 251,361 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR572DUR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOS assay TF ChIP-seq file_format bed narrowPeak file_size 18,330 downloaded_date 07/10/2025 release_date 08/12/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF924VDG.bed.gz processed_file_md5 d88fe1def619e2b8debdaef36f8b9cca wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF924VDG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF924VDG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF924VDG/@@download/ENCFF924VDG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF924VDG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f479adba3c001ff72c2095aece47ede7 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens FOS, (insertion) using TALEN inserting M. musculus Neurog2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE230955;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-08-17,2022-04-13;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR, TALEN|Category:insertion|Zygosity:heterozygous];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) TF ChIP-seq FOS IDR thresholded peaks (narrowPeak) [Experiment: ENCSR572DUR] [Life stage: Adult] [TF ChIP-seq peaks]
FOS • MCF 10A NGENCA2I2BHJL6 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF 10A TF Show metadata Download track Track metadata identifier NGENCA2I2BHJL6 data_source ENCODE Download track Download number_of_intervals 102,501 bp_covered 20,474,041 output_type conservative IDR thresholded peaks genome_build hg38 cell_type MCF 10A biosample_type Cell line biosample_term_id EFO:0001200 tissue_category Breast encode_experiment_id ENCSR000DOP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOS assay TF ChIP-seq file_format bed narrowPeak file_size 1,690,140 downloaded_date 07/10/2025 release_date 12/27/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF492PSA.bed.gz processed_file_md5 e61a85650ad45d46052471efd31fba4e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF492PSA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF492PSA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF492PSA/@@download/ENCFF492PSA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF492PSA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ee22f81758fae8a278a25791a9b28193 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF 10A stably expressing SRC treated with 1 _M afimoxifene for 12 hours;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 36 years;Reference=NR;External_resources=GEO:GSM935398,UCSC-ENCODE-hg19:wgEncodeEH002837,FactorBook:ENCSR000DOP;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-05-14;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF 10A;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001200;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF 10A (repl. 1, 2) TF ChIP-seq FOS conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOP] [Life stage: Adult] [TF ChIP-seq peaks]
FOS • MCF 10A NGENCAIQLMNLV4 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF 10A TF Show metadata Download track Track metadata identifier NGENCAIQLMNLV4 data_source ENCODE Download track Download number_of_intervals 84,285 bp_covered 17,846,575 output_type IDR thresholded peaks genome_build hg38 cell_type MCF 10A biosample_type Cell line biosample_term_id EFO:0001200 tissue_category Breast encode_experiment_id ENCSR000DOP biological_replicate 1 technical_replicate 1_1 antibody FOS assay TF ChIP-seq file_format bed narrowPeak file_size 1,344,248 downloaded_date 07/10/2025 release_date 12/27/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF900RSB.bed.gz processed_file_md5 c485cfd4b832cf27b22dbf1f824835ff wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF900RSB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF900RSB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF900RSB/@@download/ENCFF900RSB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF900RSB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 85ced8ab02d160166dcd2204b80619db data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF 10A stably expressing SRC treated with 1 _M afimoxifene for 12 hours;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 36 years;Reference=NR;External_resources=GEO:GSM935398,UCSC-ENCODE-hg19:wgEncodeEH002837,FactorBook:ENCSR000DOP;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-05-14;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF 10A;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001200;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF 10A (repl. 1) TF ChIP-seq FOS IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOP] [Life stage: Adult] [TF ChIP-seq peaks]
FOS • HeLa-S3 NGENCBSP472KJ7 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HeLa-S3 TF Show metadata Download track Track metadata identifier NGENCBSP472KJ7 data_source ENCODE Download track Download number_of_intervals 10,228 bp_covered 2,395,120 output_type IDR thresholded peaks genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000EZE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOS assay TF ChIP-seq file_format bed narrowPeak file_size 173,756 downloaded_date 06/12/2022 release_date 02/04/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF829XRF.bed.gz processed_file_md5 f3e127fe8aa9530ba41b6d6ad2128b35 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF829XRF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF829XRF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF829XRF/@@download/ENCFF829XRF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF829XRF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c769e1f1ba5ea3165dcf30285ba5e84c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HeLa-S3;Lab=Sherman Weissman, Yale;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 31 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000EZE,UCSC-ENCODE-hg19:wgEncodeEH000647,GEO:GSM935317;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE HeLa-S3 (repl. 1, 2) TF ChIP-seq FOS IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EZE] [Life stage: Adult] [TF ChIP-seq peaks]