FOSL2 • MCF-7 NGFTBTXG26FR45 • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBTXG26FR45 data_source Factorbook Download track Download number_of_intervals 30,674 bp_covered 460,110 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000BUI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOSL2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 490,463 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF423KOE_DRTGASTCATBCYBN_sorted.bed.gz processed_file_md5 ce221a39a4381c115a4307bdb26cd82d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF423KOE_DRTGASTCATBCYBN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF423KOE_DRTGASTCATBCYBN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF423KOE_DRTGASTCATBCYBN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF423KOE_DRTGASTCATBCYBN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c93822f45d0805aa58cd16a30f0711b5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Richard Myers, HAIB;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF423KOE;ENCODE_bigBed_id=ENCFF716UWP;PMID=34755879;Motif_sequence=DRTGASTCATBCYBN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding FOSL2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BUI] [Life stage: Adult] [TFBS]
FOSL2 • MCF-7 NGFTBUYXAQONTE • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBUYXAQONTE data_source Factorbook Download track Download number_of_intervals 17,977 bp_covered 143,816 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000BUI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOSL2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 179,610 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF423KOE_TGAGTCAB_sorted.bed.gz processed_file_md5 06353a37d56f9291c59c58e316df62ef wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF423KOE_TGAGTCAB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF423KOE_TGAGTCAB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF423KOE_TGAGTCAB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF423KOE_TGAGTCAB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ba7d2802973fac94bdb4d8dfd86b8a45 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Richard Myers, HAIB;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF423KOE;ENCODE_bigBed_id=ENCFF716UWP;PMID=34755879;Motif_sequence=TGAGTCAB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding FOSL2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BUI] [Life stage: Adult] [TFBS]
FOSL2 • A549 NGFTBVAP5WSXJA • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBVAP5WSXJA data_source Factorbook Download track Download number_of_intervals 8,115 bp_covered 64,920 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR067XTW biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody FOSL2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 78,723 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF021DCD_VTGACTCA_sorted.bed.gz processed_file_md5 8f6c1c96610979f97a5a15fad1c75f1d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF021DCD_VTGACTCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF021DCD_VTGACTCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF021DCD_VTGACTCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF021DCD_VTGACTCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 60c761dda4f45b232d01237d5afbddea data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 12 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF021DCD;ENCODE_bigBed_id=ENCFF859LHD;PMID=34755879;Motif_sequence=VTGACTCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding FOSL2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR067XTW] [Life stage: Adult] [TFBS]
FOSL2 • A549 NGFTBVFXHZD3MN • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBVFXHZD3MN data_source Factorbook Download track Download number_of_intervals 22,327 bp_covered 245,597 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR593DGU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOSL2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 285,565 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF976HNC_MTGAGTCAYYS_sorted.bed.gz processed_file_md5 1a5a81ecde4a3af4a735ef6d2fac294e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF976HNC_MTGAGTCAYYS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF976HNC_MTGAGTCAYYS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF976HNC_MTGAGTCAYYS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF976HNC_MTGAGTCAYYS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 aa2cc7ab0005b335c002e3082d642542 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF976HNC;ENCODE_bigBed_id=ENCFF651PDH;PMID=34755879;Motif_sequence=MTGAGTCAYYS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding FOSL2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR593DGU] [Life stage: Adult] [TFBS]
FOSL2 • A549 NGFTBWC3Y7PU62 • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBWC3Y7PU62 data_source Factorbook Download track Download number_of_intervals 31,378 bp_covered 251,024 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BQO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOSL2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 310,559 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF627JHK_RTGACTCA_sorted.bed.gz processed_file_md5 526bb03956521acd86a2aba845302dc3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF627JHK_RTGACTCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF627JHK_RTGACTCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF627JHK_RTGACTCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF627JHK_RTGACTCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2bc3b61a950729103c81cc88f7fe2f1b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF627JHK;ENCODE_bigBed_id=ENCFF161OSW;PMID=34755879;Motif_sequence=RTGACTCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding FOSL2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BQO] [Life stage: Adult] [TFBS]
FOSL2 • A549 NGFTBWKKYQ55GC • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBWKKYQ55GC data_source Factorbook Download track Download number_of_intervals 14,803 bp_covered 118,424 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR593DGU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOSL2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 158,756 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF976HNC_TGAGTCAT_sorted.bed.gz processed_file_md5 23d142d9f345275aa876ceae3c5269f0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF976HNC_TGAGTCAT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF976HNC_TGAGTCAT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF976HNC_TGAGTCAT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF976HNC_TGAGTCAT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1b1e3b0cbb6eab78ace1632ed6c6ad5f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF976HNC;ENCODE_bigBed_id=ENCFF651PDH;PMID=34755879;Motif_sequence=TGAGTCAT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding FOSL2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR593DGU] [Life stage: Adult] [TFBS]
FOSL2 • HepG2 NGFTBYTCNHT7MA • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBYTCNHT7MA data_source Factorbook Download track Download number_of_intervals 28,305 bp_covered 424,575 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BHP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOSL2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 453,392 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF401HSI_YDRTGASTCATSCHB_sorted.bed.gz processed_file_md5 853b8789ff9a0a3afa8249bec1a8aede wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF401HSI_YDRTGASTCATSCHB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF401HSI_YDRTGASTCATSCHB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF401HSI_YDRTGASTCATSCHB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF401HSI_YDRTGASTCATSCHB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7e2e36057e4c72f488166a49e33341fe data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF401HSI;ENCODE_bigBed_id=ENCFF796NIA;PMID=34755879;Motif_sequence=YDRTGASTCATSCHB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding FOSL2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BHP] [Life stage: Child] [TFBS]
FOSL2 • A549 NGFTBZUWFVFSVW • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBZUWFVFSVW data_source Factorbook Download track Download number_of_intervals 20,136 bp_covered 302,040 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR111ZXV biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody FOSL2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 329,056 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF461DSO_VVSHVTGASTCAYCH_sorted.bed.gz processed_file_md5 6950e3bc0f7e1f13c6197e6be4836e2f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF461DSO_VVSHVTGASTCAYCH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF461DSO_VVSHVTGASTCAYCH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF461DSO_VVSHVTGASTCAYCH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF461DSO_VVSHVTGASTCAYCH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 084e3b9572ca97072bb24f15b636066c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 5 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF461DSO;ENCODE_bigBed_id=ENCFF225XYD;PMID=34755879;Motif_sequence=VVSHVTGASTCAYCH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding FOSL2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR111ZXV] [Life stage: Adult] [TFBS]
Reference annotation (FOSL2) NGHOM6DMPA5RX5 • HOMER20513432 Motif finding Reference annotation (FOSL2) TFBS Show metadata Download track Track metadata identifier NGHOM6DMPA5RX5 data_source HOMER Download track Download number_of_intervals 627,684 bp_covered 7,532,208 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody FOSL2 assay Motif finding file_format bed bed6+5 Homer file_size 6,796,377 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Fosl2_bZIP.hg38.processed.bed.gz processed_file_md5 869058ca99d105f5ddce08821024b208 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Fosl2_bZIP.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Fosl2_bZIP.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=Fosl2;DNA_binding_domain=bZIP;Cell_type=3T3L1;Assay=ChIP-Seq;Origin=GSE56872;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding FOSL2 transcription factor binding sites (bed6+5 Homer) [TFBS]
FOXA1 • T47D NGENC3XH5ANXQB • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq T47D TF Show metadata Download track Track metadata identifier NGENC3XH5ANXQB data_source ENCODE Download track Download number_of_intervals 39,334 bp_covered 8,474,671 output_type conservative IDR thresholded peaks genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id ENCSR000BKY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay TF ChIP-seq file_format bed narrowPeak file_size 653,288 downloaded_date 07/10/2025 release_date 12/12/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF358WOY.bed.gz processed_file_md5 67e703f06cdcdc61a4b658b5bd4dc8cc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF358WOY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF358WOY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF358WOY/@@download/ENCFF358WOY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF358WOY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 82a78c828444d75deaa8395439c20e8e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens T47D treated with 0.02% dimethyl sulfoxide for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 54 years;Reference=NR;External_resources=FactorBook:ENCSR000BKY,UCSC-ENCODE-hg19:wgEncodeEH001588,GEO:GSM803409;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=T47D;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001247;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE T47D (repl. 1, 2) TF ChIP-seq FOXA1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BKY] [Life stage: Adult] [TF ChIP-seq peaks]
FOXA1 • HepG2 NGENC5LT5W6VG5 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENC5LT5W6VG5 data_source ENCODE Download track Download number_of_intervals 33,273 bp_covered 8,341,869 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR865RXA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay TF ChIP-seq file_format bed narrowPeak file_size 559,196 downloaded_date 06/12/2022 release_date 07/06/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF287TBB.bed.gz processed_file_md5 d10ab20cd57e7a39d444ce660e0e1ea7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF287TBB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF287TBB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF287TBB/@@download/ENCFF287TBB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF287TBB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8e4f9158e52fb37f13260804888872e2 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170359;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-09,2016-10-11;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq FOXA1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR865RXA] [Life stage: Child] [TF ChIP-seq peaks]
FOXA1 • HepG2 NGENC6IBCWDD3N • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENC6IBCWDD3N data_source ENCODE Download track Download number_of_intervals 28,301 bp_covered 6,628,831 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BMO biological_replicate 2 technical_replicate 2_1 antibody FOXA1 assay TF ChIP-seq file_format bed narrowPeak file_size 472,747 downloaded_date 06/12/2022 release_date 01/06/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF878SHW.bed.gz processed_file_md5 974a73c9fec6325fa5b8db532e6b68d2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF878SHW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF878SHW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF878SHW/@@download/ENCFF878SHW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF878SHW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d4e153aebce41cae827c71532b4311eb data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000BMO,UCSC-ENCODE-hg19:wgEncodeEH001630,GEO:GSM803432;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq FOXA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BMO] [Life stage: Child] [TF ChIP-seq peaks]
FOXA1 • Ishikawa NGENC6YY5TKNSU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Ishikawa TF Show metadata Download track Track metadata identifier NGENC6YY5TKNSU data_source ENCODE Download track Download number_of_intervals 4,422 bp_covered 825,802 output_type IDR thresholded peaks genome_build hg38 cell_type Ishikawa biosample_type Cell line biosample_term_id EFO:0005718 tissue_category Female Reproductive encode_experiment_id ENCSR000BKW biological_replicate 2 technical_replicate 2_1 antibody FOXA1 assay TF ChIP-seq file_format bed narrowPeak file_size 73,673 downloaded_date 07/10/2025 release_date 12/12/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF789YHX.bed.gz processed_file_md5 21f67c3e5c3bb7f4d07cc06c4ddda1c1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF789YHX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF789YHX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF789YHX/@@download/ENCFF789YHX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF789YHX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2482f98514683fbcb2e1291c379d48dd data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens Ishikawa treated with 0.02% dimethyl sulfoxide for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 39 years;Reference=PMID:22710073;External_resources=GEO:GSM803444,UCSC-ENCODE-hg19:wgEncodeEH001586,FactorBook:ENCSR000BKW;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Ishikawa;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=Ishikawa cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005718;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE Ishikawa (repl. 2) TF ChIP-seq FOXA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BKW] [Life stage: Adult] [TF ChIP-seq peaks]
FOXA1 • MCF-7 NGENC6Z2W7DPJW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENC6Z2W7DPJW data_source ENCODE Download track Download number_of_intervals 27,571 bp_covered 8,924,253 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR126YEB biological_replicate 1 technical_replicate 1_1 antibody FOXA1 assay TF ChIP-seq file_format bed narrowPeak file_size 508,306 downloaded_date 06/12/2022 release_date 12/09/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF262HMG.bed.gz processed_file_md5 41a9ad117336905a492bc572bdbf7bf0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF262HMG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF262HMG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF262HMG/@@download/ENCFF262HMG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF262HMG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fa29d2d5ba1b4eea7fcfea5f55b07e44 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2,DREAM;Life_stage_age=adult 69 years;Reference=NR;External_resources=FactorBook:ENCSR126YEB,GEO:GSE105305;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-07-08,2014-07-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1) TF ChIP-seq FOXA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR126YEB] [Life stage: Adult] [TF ChIP-seq peaks]
FOXA1 • MCF-7 NGENC6ZHBOTFKA • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENC6ZHBOTFKA data_source ENCODE Download track Download number_of_intervals 25,037 bp_covered 8,020,175 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR126YEB biological_replicate 2 technical_replicate 2_1 antibody FOXA1 assay TF ChIP-seq file_format bed narrowPeak file_size 484,255 downloaded_date 06/12/2022 release_date 12/09/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF199TVM.bed.gz processed_file_md5 8558f516326d65beaa50b148826d4ca1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF199TVM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF199TVM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF199TVM/@@download/ENCFF199TVM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF199TVM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 43537bb9c9444f3dc5bd1b360d49927f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2,DREAM;Life_stage_age=adult 69 years;Reference=NR;External_resources=FactorBook:ENCSR126YEB,GEO:GSE105305;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-07-08,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 2) TF ChIP-seq FOXA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR126YEB] [Life stage: Adult] [TF ChIP-seq peaks]
FOXA1 • T47D NGENC7BMXQPDET • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq T47D TF Show metadata Download track Track metadata identifier NGENC7BMXQPDET data_source ENCODE Download track Download number_of_intervals 50,441 bp_covered 11,089,719 output_type IDR thresholded peaks genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id ENCSR000BKY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay TF ChIP-seq file_format bed narrowPeak file_size 816,317 downloaded_date 09/10/2024 release_date 12/12/2020 date_added_to_filer 10/01/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF094LEJ.bed.gz processed_file_md5 8ee43b945938d7cc27fa0503bc323b6a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF094LEJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF094LEJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF094LEJ/@@download/ENCFF094LEJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF094LEJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 42f30b591c264c96ddfc7b300040c698 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens T47D treated with 0.02% dimethyl sulfoxide for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 54 years;Reference=NR;External_resources=FactorBook:ENCSR000BKY,UCSC-ENCODE-hg19:wgEncodeEH001588,GEO:GSM803409;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=T47D;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001247;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE T47D (repl. 1, 2) TF ChIP-seq FOXA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BKY] [Life stage: Adult] [TF ChIP-seq peaks]
FOXA1 • Ishikawa NGENC7VGJXPUQ5 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Ishikawa TF Show metadata Download track Track metadata identifier NGENC7VGJXPUQ5 data_source ENCODE Download track Download number_of_intervals 3,700 bp_covered 728,458 output_type IDR thresholded peaks genome_build hg38 cell_type Ishikawa biosample_type Cell line biosample_term_id EFO:0005718 tissue_category Female Reproductive encode_experiment_id ENCSR000BKW biological_replicate 1 technical_replicate 1_1 antibody FOXA1 assay TF ChIP-seq file_format bed narrowPeak file_size 62,535 downloaded_date 07/10/2025 release_date 12/12/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF078YRQ.bed.gz processed_file_md5 2fd60d49de95ff2545c9292b3d46eb2a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF078YRQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF078YRQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF078YRQ/@@download/ENCFF078YRQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF078YRQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0fbb96a7db792b531812d6cf84a83f0c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens Ishikawa treated with 0.02% dimethyl sulfoxide for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 39 years;Reference=PMID:22710073;External_resources=GEO:GSM803444,UCSC-ENCODE-hg19:wgEncodeEH001586,FactorBook:ENCSR000BKW;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Ishikawa;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=Ishikawa cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005718;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE Ishikawa (repl. 1) TF ChIP-seq FOXA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BKW] [Life stage: Adult] [TF ChIP-seq peaks]
FOXA1 • HepG2 NGENC7YOI7JT3R • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENC7YOI7JT3R data_source ENCODE Download track Download number_of_intervals 33,907 bp_covered 8,641,779 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BMO biological_replicate 1 technical_replicate 1_1 antibody FOXA1 assay TF ChIP-seq file_format bed narrowPeak file_size 561,694 downloaded_date 06/12/2022 release_date 01/06/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF143TBP.bed.gz processed_file_md5 25fbec1bc4d198d2d560279cf6eb9012 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF143TBP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF143TBP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF143TBP/@@download/ENCFF143TBP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF143TBP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 03f1db2d18c7367ca8010add39b72201 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000BMO,UCSC-ENCODE-hg19:wgEncodeEH001630,GEO:GSM803432;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq FOXA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BMO] [Life stage: Child] [TF ChIP-seq peaks]
FOXA1 • MCF-7 NGENCAUY44YJI2 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCAUY44YJI2 data_source ENCODE Download track Download number_of_intervals 36,453 bp_covered 11,604,635 output_type conservative IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR126YEB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay TF ChIP-seq file_format bed narrowPeak file_size 726,569 downloaded_date 06/12/2022 release_date 12/09/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF512ITK.bed.gz processed_file_md5 76f9188a1eb5711aed5b183e2afd07ce wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF512ITK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF512ITK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF512ITK/@@download/ENCFF512ITK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF512ITK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 792fbcf0c30ff238799bf996d3facea0 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2,DREAM;Life_stage_age=adult 69 years;Reference=NR;External_resources=FactorBook:ENCSR126YEB,GEO:GSE105305;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-07-08,2014-07-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq FOXA1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR126YEB] [Life stage: Adult] [TF ChIP-seq peaks]
FOXA1 • HEK293T NGENCBVZWDDL24 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293T TF Show metadata Download track Track metadata identifier NGENCBVZWDDL24 data_source ENCODE Download track Download number_of_intervals 965 bp_covered 301,624 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293T biosample_type Cell line biosample_term_id EFO:0001184 tissue_category Kidney encode_experiment_id ENCSR094WHO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay TF ChIP-seq file_format bed narrowPeak file_size 19,335 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF568IEA.bed.gz processed_file_md5 1bd0974bcc9ff1906a6b6f991821831d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF568IEA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF568IEA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF568IEA/@@download/ENCFF568IEA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF568IEA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 48c76715d48fc8ea8f30d9ea9caae132 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293T;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=FactorBook:ENCSR094WHO,GEO:GSE91473;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-11-17,2016-11-01;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HEK293T;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001184;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293T (repl. 1, 2) TF ChIP-seq FOXA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR094WHO] [Life stage: Embryonic] [TF ChIP-seq peaks]