FOXA1 • HEK293T NGENCZIKX7MRQO • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293T TF Show metadata Download track Track metadata identifier NGENCZIKX7MRQO data_source ENCODE Download track Download number_of_intervals 400 bp_covered 122,121 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293T biosample_type Cell line biosample_term_id EFO:0001184 tissue_category Kidney encode_experiment_id ENCSR094WHO biological_replicate 2 technical_replicate 2_1 antibody FOXA1 assay TF ChIP-seq file_format bed narrowPeak file_size 7,802 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF372ZSI.bed.gz processed_file_md5 5776a169a06686bd9672fabac91f51e7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF372ZSI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF372ZSI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF372ZSI/@@download/ENCFF372ZSI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF372ZSI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0a54d45765f6ddefe0e48777a34485ec data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293T;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=FactorBook:ENCSR094WHO,GEO:GSE91473;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-11-17,2016-11-01;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293T;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001184;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293T (repl. 2) TF ChIP-seq FOXA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR094WHO] [Life stage: Embryonic] [TF ChIP-seq peaks]
FOXA1 • A549 NGFTB3C7H5GASI • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTB3C7H5GASI data_source Factorbook Download track Download number_of_intervals 21,589 bp_covered 280,657 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BRD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 336,319 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF125JED_TGTTTACWYWGNN_sorted.bed.gz processed_file_md5 6d1c65060b7643e0d42e39f920d408a7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF125JED_TGTTTACWYWGNN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF125JED_TGTTTACWYWGNN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF125JED_TGTTTACWYWGNN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF125JED_TGTTTACWYWGNN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6e1b0cdb92f447966eec63acec516101 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF125JED;ENCODE_bigBed_id=ENCFF202XEO;PMID=34755879;Motif_sequence=TGTTTACWYWGNN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BRD] [Life stage: Adult] [TFBS]
FOXA1 • A549 NGFTB3GBNH4HWY • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTB3GBNH4HWY data_source Factorbook Download track Download number_of_intervals 5,380 bp_covered 59,180 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BPX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 76,649 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF828WWJ_TGTTTACWYWD_sorted.bed.gz processed_file_md5 3e4686f4c91f3c66bf4b3de1474e705b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF828WWJ_TGTTTACWYWD_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF828WWJ_TGTTTACWYWD_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF828WWJ_TGTTTACWYWD.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF828WWJ_TGTTTACWYWD.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4a44115c3485c92cf9d17c8d4b44e7eb data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF828WWJ;ENCODE_bigBed_id=ENCFF075LGR;PMID=34755879;Motif_sequence=TGTTTACWYWD;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BPX] [Life stage: Adult] [TFBS]
FOXA1 • T47D NGFTB5TGHLKHBW • Factorbook34755879 Motif finding T47D TFBS Show metadata Download track Track metadata identifier NGFTB5TGHLKHBW data_source Factorbook Download track Download number_of_intervals 24,134 bp_covered 362,010 output_type transcription factor binding sites all genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id ENCSR000BKY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 428,080 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758GJL_NVYWRWGTAAACANN_sorted.bed.gz processed_file_md5 6bf090cde5783c5a21a72151e12ab63f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758GJL_NVYWRWGTAAACANN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758GJL_NVYWRWGTAAACANN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF758GJL_NVYWRWGTAAACANN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF758GJL_NVYWRWGTAAACANN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d1b5854bba237b7803a341b00d361dd3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens T47D treated with 0.02% dimethyl sulfoxide for 1 hour;Original_cell_type=T47D;Lab=Richard Myers, HAIB;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF758GJL;ENCODE_bigBed_id=ENCFF094LEJ;PMID=34755879;Motif_sequence=NVYWRWGTAAACANN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001247;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook T47D (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BKY] [Life stage: Adult] [TFBS]
FOXA1 • MCF-7 NGFTB6DA5YDFUD • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTB6DA5YDFUD data_source Factorbook Download track Download number_of_intervals 42 bp_covered 882 output_type transcription factor binding sites significant genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR126YEB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 994 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF112JVK_GTAGGCTAYNYCATCTAGGTT_filtered.bed.gz processed_file_md5 6ca689fca83817d0ffda66e5926609ee wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF112JVK_GTAGGCTAYNYCATCTAGGTT_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF112JVK_GTAGGCTAYNYCATCTAGGTT_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF112JVK_GTAGGCTAYNYCATCTAGGTT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF112JVK_GTAGGCTAYNYCATCTAGGTT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d33df8a13dd946066461487306763a8c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF112JVK;ENCODE_bigBed_id=ENCFF465LTH;PMID=34755879;Motif_sequence=GTAGGCTAYNYCATCTAGGTT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR126YEB] [Life stage: Adult] [TFBS]
FOXA1 • HepG2 NGFTB6JB4DKUHN • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB6JB4DKUHN data_source Factorbook Download track Download number_of_intervals 19,228 bp_covered 153,824 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BMO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 192,512 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF948RVA_TRTTTRCH_sorted.bed.gz processed_file_md5 df46317e21d8053c800c0d6b6026e718 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF948RVA_TRTTTRCH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF948RVA_TRTTTRCH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF948RVA_TRTTTRCH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF948RVA_TRTTTRCH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 845eca5a3282ccc5eac415047e5c3bd7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF948RVA;ENCODE_bigBed_id=ENCFF740VZW;PMID=34755879;Motif_sequence=TRTTTRCH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BMO] [Life stage: Child] [TFBS]
FOXA1 • Liver NGFTB76745PPDP • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTB76745PPDP data_source Factorbook Download track Download number_of_intervals 12,417 bp_covered 198,672 output_type transcription factor binding sites all genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR324RCI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 221,854 downloaded_date 07/10/2024 release_date 06/30/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF729FSA_NSHTGTTTACWYWRNN_sorted.bed.gz processed_file_md5 0d6079126dd9581e62a2bc19b8bf9d34 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF729FSA_NSHTGTTTACWYWRNN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF729FSA_NSHTGTTTACWYWRNN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF729FSA_NSHTGTTTACWYWRNN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF729FSA_NSHTGTTTACWYWRNN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 69df8e4aa237babbd0679860f15d59b1 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens liver tissue female child (4 years);Original_cell_type=liver;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF729FSA;ENCODE_bigBed_id=ENCFF537QZV;PMID=34755879;Motif_sequence=NSHTGTTTACWYWRNN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook Liver (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR324RCI] [Life stage: Child] [TFBS]
FOXA1 • HepG2 NGFTBGQPW3VJPX • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBGQPW3VJPX data_source Factorbook Download track Download number_of_intervals 33,779 bp_covered 506,685 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BLE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 608,067 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF466RZX_VCWRWGTAAACANNV_sorted.bed.gz processed_file_md5 3de6446c1788d6a7328f123d3361f9bd wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF466RZX_VCWRWGTAAACANNV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF466RZX_VCWRWGTAAACANNV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF466RZX_VCWRWGTAAACANNV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF466RZX_VCWRWGTAAACANNV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a90363abf6c1c6e056b5bd5151e9d848 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF466RZX;ENCODE_bigBed_id=ENCFF207NVJ;PMID=34755879;Motif_sequence=VCWRWGTAAACANNV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BLE] [Life stage: Child] [TFBS]
FOXA1 • HepG2 NGFTBI4BLV3AHV • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBI4BLV3AHV data_source Factorbook Download track Download number_of_intervals 5,641 bp_covered 62,051 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR267DFA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 76,873 downloaded_date 07/10/2024 release_date 07/28/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF011QFM_NWRWGTAAAYA_sorted.bed.gz processed_file_md5 d3b87e8aec89df49fbbdafbff26b3629 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF011QFM_NWRWGTAAAYA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF011QFM_NWRWGTAAAYA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF011QFM_NWRWGTAAAYA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF011QFM_NWRWGTAAAYA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6607798824097bdf1727c0627e5c8ab7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF011QFM;ENCODE_bigBed_id=ENCFF600IFL;PMID=34755879;Motif_sequence=NWRWGTAAAYA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR267DFA] [Life stage: Child] [TFBS]
FOXA1 • MCF-7 NGFTBIAQWGN5TG • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBIAQWGN5TG data_source Factorbook Download track Download number_of_intervals 32,154 bp_covered 482,310 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR126YEB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 545,990 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF112JVK_HNNTRTTTACWYWGB_sorted.bed.gz processed_file_md5 26dabecf0ec53a2f19c0de00e1db68bb wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF112JVK_HNNTRTTTACWYWGB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF112JVK_HNNTRTTTACWYWGB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF112JVK_HNNTRTTTACWYWGB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF112JVK_HNNTRTTTACWYWGB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7c42e366cf1bab1ee3f70d45535a1c23 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF112JVK;ENCODE_bigBed_id=ENCFF465LTH;PMID=34755879;Motif_sequence=HNNTRTTTACWYWGB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR126YEB] [Life stage: Adult] [TFBS]
FOXA1 • A549 NGFTBIEQMHRM74 • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBIEQMHRM74 data_source Factorbook Download track Download number_of_intervals 20,686 bp_covered 227,546 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BRD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 290,922 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF125JED_MWADRYAAACA_sorted.bed.gz processed_file_md5 f5a42ae8cdc83cbec352172fe3e3b2d7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF125JED_MWADRYAAACA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF125JED_MWADRYAAACA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF125JED_MWADRYAAACA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF125JED_MWADRYAAACA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4a55217b905045b27cc6e15a09fc129e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF125JED;ENCODE_bigBed_id=ENCFF202XEO;PMID=34755879;Motif_sequence=MWADRYAAACA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BRD] [Life stage: Adult] [TFBS]
FOXA1 • Liver NGFTBIX7W7Q7W5 • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTBIX7W7Q7W5 data_source Factorbook Download track Download number_of_intervals 6,667 bp_covered 100,005 output_type transcription factor binding sites all genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR735KEY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 114,403 downloaded_date 07/10/2024 release_date 06/30/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF045YSD_SHTGTTTACWYWRBN_sorted.bed.gz processed_file_md5 95aac5ccc8c5185fb6ad867fb81beaa2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF045YSD_SHTGTTTACWYWRBN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF045YSD_SHTGTTTACWYWRBN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF045YSD_SHTGTTTACWYWRBN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF045YSD_SHTGTTTACWYWRBN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 5166d1fc5125a3785d46486e368560c3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens with nonobstructive coronary artery disease| liver tissue male adult (32 years);Original_cell_type=liver;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF045YSD;ENCODE_bigBed_id=ENCFF749ERP;PMID=34755879;Motif_sequence=SHTGTTTACWYWRBN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Liver (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR735KEY] [Life stage: Adult] [TFBS]
FOXA1 • MCF-7 NGFTBJHYPDSKG2 • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBJHYPDSKG2 data_source Factorbook Download track Download number_of_intervals 72,366 bp_covered 884,430 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR126YEB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 967,413 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF112JVK_TRTTTACWYW_sorted.bed.gz processed_file_md5 b39683c03b28ad155ab310972a495b6f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF112JVK_TRTTTACWYW_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF112JVK_TRTTTACWYW_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF112JVK_TRTTTACWYW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF112JVK_TRTTTACWYW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 68a2563858bc799d5eb50b375d6f3c6c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF112JVK;ENCODE_bigBed_id=ENCFF465LTH;PMID=34755879;Motif_sequence=TRTTTACWYW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR126YEB] [Life stage: Adult] [TFBS]
FOXA1 • Liver NGFTBKOZDWSLHI • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTBKOZDWSLHI data_source Factorbook Download track Download number_of_intervals 6,135 bp_covered 67,485 output_type transcription factor binding sites all genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR735KEY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 85,566 downloaded_date 07/10/2024 release_date 06/30/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF045YSD_TRTTTACHNWB_sorted.bed.gz processed_file_md5 5dfe7f61b024767d7a1a88fb54c848ee wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF045YSD_TRTTTACHNWB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF045YSD_TRTTTACHNWB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF045YSD_TRTTTACHNWB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF045YSD_TRTTTACHNWB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e46ed05917000aaeabc683ddd3f8b3db data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens with nonobstructive coronary artery disease| liver tissue male adult (32 years);Original_cell_type=liver;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF045YSD;ENCODE_bigBed_id=ENCFF749ERP;PMID=34755879;Motif_sequence=TRTTTACHNWB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Liver (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR735KEY] [Life stage: Adult] [TFBS]
FOXA1 • T47D NGFTBLVP3DFZPO • Factorbook34755879 Motif finding T47D TFBS Show metadata Download track Track metadata identifier NGFTBLVP3DFZPO data_source Factorbook Download track Download number_of_intervals 7,396 bp_covered 81,356 output_type transcription factor binding sites all genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id ENCSR000BKY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 106,252 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758GJL_ACATTCCWKWS_sorted.bed.gz processed_file_md5 8096696fe75a8335eb49888f66fff5b7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758GJL_ACATTCCWKWS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758GJL_ACATTCCWKWS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF758GJL_ACATTCCWKWS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF758GJL_ACATTCCWKWS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1910c54fbc12ee59594bb97c967c05b6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens T47D treated with 0.02% dimethyl sulfoxide for 1 hour;Original_cell_type=T47D;Lab=Richard Myers, HAIB;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF758GJL;ENCODE_bigBed_id=ENCFF094LEJ;PMID=34755879;Motif_sequence=ACATTCCWKWS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001247;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook T47D (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BKY] [Life stage: Adult] [TFBS]
FOXA1 • HepG2 NGFTBN3JYH3NKL • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBN3JYH3NKL data_source Factorbook Download track Download number_of_intervals 21,909 bp_covered 175,272 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BLE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 212,341 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF466RZX_TRTTTACH_sorted.bed.gz processed_file_md5 9d11d9e295e96a2a4d8279a5e447ab38 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF466RZX_TRTTTACH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF466RZX_TRTTTACH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF466RZX_TRTTTACH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF466RZX_TRTTTACH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a924aa8825dde100cbf834fcada2250d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF466RZX;ENCODE_bigBed_id=ENCFF207NVJ;PMID=34755879;Motif_sequence=TRTTTACH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BLE] [Life stage: Child] [TFBS]
FOXA1 • T47D NGFTBNAYANSJDZ • Factorbook34755879 Motif finding T47D TFBS Show metadata Download track Track metadata identifier NGFTBNAYANSJDZ data_source Factorbook Download track Download number_of_intervals 12,764 bp_covered 102,112 output_type transcription factor binding sites all genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id ENCSR000BKY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 126,745 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758GJL_DGYAAAYA_sorted.bed.gz processed_file_md5 bf1259f381015d60cc57f5d153e87848 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758GJL_DGYAAAYA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758GJL_DGYAAAYA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF758GJL_DGYAAAYA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF758GJL_DGYAAAYA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 41346f3d096e30d30176520ac209b527 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens T47D treated with 0.02% dimethyl sulfoxide for 1 hour;Original_cell_type=T47D;Lab=Richard Myers, HAIB;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF758GJL;ENCODE_bigBed_id=ENCFF094LEJ;PMID=34755879;Motif_sequence=DGYAAAYA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001247;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook T47D (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BKY] [Life stage: Adult] [TFBS]
FOXA1 • A549 NGFTBO34GRTXVA • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBO34GRTXVA data_source Factorbook Download track Download number_of_intervals 9,767 bp_covered 78,136 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BRD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 98,440 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF125JED_TGAGTCAY_sorted.bed.gz processed_file_md5 8859085086161cc65e0f040529935b37 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF125JED_TGAGTCAY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF125JED_TGAGTCAY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF125JED_TGAGTCAY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF125JED_TGAGTCAY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 46e100d293b18d9e79ec48e5f38e05ca data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF125JED;ENCODE_bigBed_id=ENCFF202XEO;PMID=34755879;Motif_sequence=TGAGTCAY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BRD] [Life stage: Adult] [TFBS]
FOXA1 • MCF-7 NGFTBPQV4XWJJC • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBPQV4XWJJC data_source Factorbook Download track Download number_of_intervals 2,588 bp_covered 54,348 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR126YEB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 52,264 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF112JVK_GTAGGCTAYNYCATCTAGGTT_sorted.bed.gz processed_file_md5 07e599a215ddb64f769cadd2e1eb9c8c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF112JVK_GTAGGCTAYNYCATCTAGGTT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF112JVK_GTAGGCTAYNYCATCTAGGTT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF112JVK_GTAGGCTAYNYCATCTAGGTT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF112JVK_GTAGGCTAYNYCATCTAGGTT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d33df8a13dd946066461487306763a8c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF112JVK;ENCODE_bigBed_id=ENCFF465LTH;PMID=34755879;Motif_sequence=GTAGGCTAYNYCATCTAGGTT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR126YEB] [Life stage: Adult] [TFBS]
FOXA1 • HepG2 NGFTBPYWGTVVJK • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBPYWGTVVJK data_source Factorbook Download track Download number_of_intervals 5,734 bp_covered 86,010 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR267DFA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 100,101 downloaded_date 07/10/2024 release_date 07/28/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF011QFM_MWRWGTAAACANNRV_sorted.bed.gz processed_file_md5 e5ba4b1a129cd417900f0ab2fb48498d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF011QFM_MWRWGTAAACANNRV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF011QFM_MWRWGTAAACANNRV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF011QFM_MWRWGTAAACANNRV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF011QFM_MWRWGTAAACANNRV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 880db02a61ae5b9aefae635a04506d6c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF011QFM;ENCODE_bigBed_id=ENCFF600IFL;PMID=34755879;Motif_sequence=MWRWGTAAACANNRV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding FOXA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR267DFA] [Life stage: Child] [TFBS]