FOXA2 • HepG2 NGFTBG3T6KRX3X • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBG3T6KRX3X data_source Factorbook Download track Download number_of_intervals 28,400 bp_covered 227,200 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR066EBK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 277,609 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF466FCB_DGTAAAYA_sorted.bed.gz processed_file_md5 eef425cad3c88474eedb95b81c272c31 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF466FCB_DGTAAAYA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF466FCB_DGTAAAYA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF466FCB_DGTAAAYA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF466FCB_DGTAAAYA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 61fd652ce5263462605d000cc831d2a0 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF466FCB;ENCODE_bigBed_id=ENCFF570ABM;PMID=34755879;Motif_sequence=DGTAAAYA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding FOXA2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR066EBK] [Life stage: Child] [TFBS]
FOXA2 • HepG2 NGFTBGK7DHKP4E • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBGK7DHKP4E data_source Factorbook Download track Download number_of_intervals 5,591 bp_covered 150,957 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR066EBK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 132,011 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF466FCB_AGWAGMTCAAAGGKYAGTYTYWKGRCC_sorted.bed.gz processed_file_md5 78df99d8e8228495dbfd37d263c9ea85 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF466FCB_AGWAGMTCAAAGGKYAGTYTYWKGRCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF466FCB_AGWAGMTCAAAGGKYAGTYTYWKGRCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF466FCB_AGWAGMTCAAAGGKYAGTYTYWKGRCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF466FCB_AGWAGMTCAAAGGKYAGTYTYWKGRCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d2137ffb81e2a9a5aafe39d2978f6e4e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF466FCB;ENCODE_bigBed_id=ENCFF570ABM;PMID=34755879;Motif_sequence=AGWAGMTCAAAGGKYAGTYTYWKGRCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding FOXA2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR066EBK] [Life stage: Child] [TFBS]
FOXA2 • HepG2 NGFTBGLKMXW5VS • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBGLKMXW5VS data_source Factorbook Download track Download number_of_intervals 11 bp_covered 297 output_type transcription factor binding sites significant genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR066EBK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 603 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF466FCB_AGWAGMTCAAAGGKYAGTYTYWKGRCC_filtered.bed.gz processed_file_md5 5cf2d3646b967377edb52e8e5be85044 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF466FCB_AGWAGMTCAAAGGKYAGTYTYWKGRCC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF466FCB_AGWAGMTCAAAGGKYAGTYTYWKGRCC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF466FCB_AGWAGMTCAAAGGKYAGTYTYWKGRCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF466FCB_AGWAGMTCAAAGGKYAGTYTYWKGRCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d2137ffb81e2a9a5aafe39d2978f6e4e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF466FCB;ENCODE_bigBed_id=ENCFF570ABM;PMID=34755879;Motif_sequence=AGWAGMTCAAAGGKYAGTYTYWKGRCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding FOXA2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR066EBK] [Life stage: Child] [TFBS]
FOXA2 • A549 NGFTBJC6JLP7ML • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBJC6JLP7ML data_source Factorbook Download track Download number_of_intervals 8,831 bp_covered 70,648 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BRE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 82,515 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF686MSH_RTGACTCA_sorted.bed.gz processed_file_md5 6c01cbf95b7b7673e70df4349a8e3ff1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF686MSH_RTGACTCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF686MSH_RTGACTCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF686MSH_RTGACTCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF686MSH_RTGACTCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a7b59a19a2099f06146eca399f6348f2 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF686MSH;ENCODE_bigBed_id=ENCFF567MXU;PMID=34755879;Motif_sequence=RTGACTCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding FOXA2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BRE] [Life stage: Adult] [TFBS]
FOXA2 • Liver NGFTBM7PA3BGSQ • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTBM7PA3BGSQ data_source Factorbook Download track Download number_of_intervals 5,695 bp_covered 85,425 output_type transcription factor binding sites all genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR080XEY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 98,218 downloaded_date 07/10/2024 release_date 06/30/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF034VYE_GYYTGGCTGTKKYCC_sorted.bed.gz processed_file_md5 7a6b96649aaccec6d98e52d2c30202ca wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF034VYE_GYYTGGCTGTKKYCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF034VYE_GYYTGGCTGTKKYCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF034VYE_GYYTGGCTGTKKYCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF034VYE_GYYTGGCTGTKKYCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 70e09b100d0052a268f26b96027ce6db data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens liver tissue female child (4 years);Original_cell_type=liver;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF034VYE;ENCODE_bigBed_id=ENCFF888VJF;PMID=34755879;Motif_sequence=GYYTGGCTGTKKYCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook Liver (repl. 1, 2) Motif finding FOXA2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR080XEY] [Life stage: Child] [TFBS]
FOXA2 • Liver NGFTBOXZQET53R • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTBOXZQET53R data_source Factorbook Download track Download number_of_intervals 7,254 bp_covered 58,032 output_type transcription factor binding sites all genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR310NYI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 79,609 downloaded_date 07/10/2024 release_date 06/30/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF139CMF_TRTTTACH_sorted.bed.gz processed_file_md5 1c139acf1a3a9e9f80570a298d03ec19 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF139CMF_TRTTTACH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF139CMF_TRTTTACH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF139CMF_TRTTTACH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF139CMF_TRTTTACH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b6d69427d03a5112a6bdc24858333d31 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens with nonobstructive coronary artery disease| liver tissue male adult (32 years);Original_cell_type=liver;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF139CMF;ENCODE_bigBed_id=ENCFF877SFI;PMID=34755879;Motif_sequence=TRTTTACH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Liver (repl. 1, 2) Motif finding FOXA2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR310NYI] [Life stage: Adult] [TFBS]
FOXA2 • Liver NGFTBP7TLLIDTN • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTBP7TLLIDTN data_source Factorbook Download track Download number_of_intervals 14,768 bp_covered 162,448 output_type transcription factor binding sites all genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR080XEY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 203,496 downloaded_date 07/10/2024 release_date 06/30/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF034VYE_TGTTTACHYWG_sorted.bed.gz processed_file_md5 3b21a37f6455d64186f38d62b7a8a8f7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF034VYE_TGTTTACHYWG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF034VYE_TGTTTACHYWG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF034VYE_TGTTTACHYWG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF034VYE_TGTTTACHYWG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8aabc2c7ce7ba3d728a61d278bc345ab data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens liver tissue female child (4 years);Original_cell_type=liver;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF034VYE;ENCODE_bigBed_id=ENCFF888VJF;PMID=34755879;Motif_sequence=TGTTTACHYWG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook Liver (repl. 1, 2) Motif finding FOXA2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR080XEY] [Life stage: Child] [TFBS]
FOXA2 • A549 NGFTBPDNSJ6KLN • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBPDNSJ6KLN data_source Factorbook Download track Download number_of_intervals 14,778 bp_covered 162,558 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BRE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 207,401 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF686MSH_CARRRYAAACA_sorted.bed.gz processed_file_md5 0c95570d5ee87020eddaa9364ddf1c3a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF686MSH_CARRRYAAACA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF686MSH_CARRRYAAACA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF686MSH_CARRRYAAACA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF686MSH_CARRRYAAACA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f8d108480765a1a78fff7b751210cf09 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF686MSH;ENCODE_bigBed_id=ENCFF567MXU;PMID=34755879;Motif_sequence=CARRRYAAACA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding FOXA2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BRE] [Life stage: Adult] [TFBS]
FOXA2 • A549 NGFTBRLK5P6DD6 • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBRLK5P6DD6 data_source Factorbook Download track Download number_of_intervals 18,071 bp_covered 307,207 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BRE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 330,069 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF686MSH_BBBNTGTTTACWYWGBN_sorted.bed.gz processed_file_md5 020639dae1992724190f0c9d84b3da98 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF686MSH_BBBNTGTTTACWYWGBN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF686MSH_BBBNTGTTTACWYWGBN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF686MSH_BBBNTGTTTACWYWGBN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF686MSH_BBBNTGTTTACWYWGBN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c1c3fe06d3623183de303d322b4a63a3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF686MSH;ENCODE_bigBed_id=ENCFF567MXU;PMID=34755879;Motif_sequence=BBBNTGTTTACWYWGBN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding FOXA2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BRE] [Life stage: Adult] [TFBS]
FOXA2 • Liver NGFTBVAFL5R3TY • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTBVAFL5R3TY data_source Factorbook Download track Download number_of_intervals 14,650 bp_covered 219,750 output_type transcription factor binding sites all genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR080XEY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 252,714 downloaded_date 07/10/2024 release_date 06/30/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF034VYE_NSHTGTTTACWYWGB_sorted.bed.gz processed_file_md5 3ffa6c4e0dbb25ad3d043f8d56fab385 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF034VYE_NSHTGTTTACWYWGB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF034VYE_NSHTGTTTACWYWGB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF034VYE_NSHTGTTTACWYWGB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF034VYE_NSHTGTTTACWYWGB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c7a1b9cb68dd6bf99809b9aabe370537 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens liver tissue female child (4 years);Original_cell_type=liver;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF034VYE;ENCODE_bigBed_id=ENCFF888VJF;PMID=34755879;Motif_sequence=NSHTGTTTACWYWGB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook Liver (repl. 1, 2) Motif finding FOXA2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR080XEY] [Life stage: Child] [TFBS]
FOXA2 • HepG2 NGFTBVHEKJ6YO5 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBVHEKJ6YO5 data_source Factorbook Download track Download number_of_intervals 47,439 bp_covered 711,585 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR066EBK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 811,167 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF466FCB_VMWRWGTAAACANNV_sorted.bed.gz processed_file_md5 119d8fb6c78e04d7783fbf0d409f5f4b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF466FCB_VMWRWGTAAACANNV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF466FCB_VMWRWGTAAACANNV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF466FCB_VMWRWGTAAACANNV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF466FCB_VMWRWGTAAACANNV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b01de2e61dd5d8a097aa24183bb1def3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF466FCB;ENCODE_bigBed_id=ENCFF570ABM;PMID=34755879;Motif_sequence=VMWRWGTAAACANNV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding FOXA2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR066EBK] [Life stage: Child] [TFBS]
FOXA2 • HepG2 NGFTBYDY56V6D5 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBYDY56V6D5 data_source Factorbook Download track Download number_of_intervals 28,246 bp_covered 423,690 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BNI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 479,760 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF759YCY_VHWRWGTAAACANNR_sorted.bed.gz processed_file_md5 eedfc172c99be48a9e9c3124198b257a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF759YCY_VHWRWGTAAACANNR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF759YCY_VHWRWGTAAACANNR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF759YCY_VHWRWGTAAACANNR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF759YCY_VHWRWGTAAACANNR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 05949fe5af30cae77d70b4a156d1b651 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF759YCY;ENCODE_bigBed_id=ENCFF533COJ;PMID=34755879;Motif_sequence=VHWRWGTAAACANNR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding FOXA2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BNI] [Life stage: Child] [TFBS]
Reference annotation (FOXA2) NGHOM2AFKEUFAD • HOMER20513432 Motif finding Reference annotation (FOXA2) TFBS Show metadata Download track Track metadata identifier NGHOM2AFKEUFAD data_source HOMER Download track Download number_of_intervals 1,749,102 bp_covered 20,989,224 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody FOXA2 assay Motif finding file_format bed bed6+5 Homer file_size 20,705,263 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Foxa2_Forkhead.hg38.processed.bed.gz processed_file_md5 38422511118658a68878bfe434196555 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Foxa2_Forkhead.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Foxa2_Forkhead.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=Foxa2;DNA_binding_domain=Forkhead;Cell_type=Liver;Assay=ChIP-Seq;Origin=GSE25694;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding FOXA2 transcription factor binding sites (bed6+5 Homer) [TFBS]
Reference annotation (FOXA2) NGHOMRDIRFGR72 • HOMER20513432 Motif finding Reference annotation (FOXA2) TFBS Show metadata Download track Track metadata identifier NGHOMRDIRFGR72 data_source HOMER Download track Download number_of_intervals 1,809,256 bp_covered 30,757,352 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody FOXA2 assay Motif finding file_format bed bed6+5 Homer file_size 26,327,575 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Fox-Ebox_Forkhead-bHLH.hg38.processed.bed.gz processed_file_md5 3a65be8f475feee5b1623613a3cb65b7 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Fox-Ebox_Forkhead-bHLH.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Fox-Ebox_Forkhead-bHLH.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=Fox:Ebox;DNA_binding_domain=Forkhead,bHLH;Cell_type=Panc1;Assay=ChIP-Seq;Origin=GSE47459;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding FOXA2 transcription factor binding sites (bed6+5 Homer) [TFBS]
Reference annotation (FOXA2) NGHOMYDQVVHYJH • HOMER20513432 Motif finding Reference annotation (FOXA2) TFBS Show metadata Download track Track metadata identifier NGHOMYDQVVHYJH data_source HOMER Download track Download number_of_intervals 473,956 bp_covered 6,161,428 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody FOXA2 assay Motif finding file_format bed bed6+5 Homer file_size 5,456,524 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Hnf1_Homeobox.hg38.processed.bed.gz processed_file_md5 4593655560415f1f49477adae8e30f54 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Hnf1_Homeobox.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Hnf1_Homeobox.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=Hnf1;DNA_binding_domain=Homeobox;Cell_type=Liver;Assay=Chip-Seq;Origin=GSE25694;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding FOXA2 transcription factor binding sites (bed6+5 Homer) [TFBS]
FOXA3 • K562 NGENC7K3PQITED • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC7K3PQITED data_source ENCODE Download track Download number_of_intervals 4,751 bp_covered 1,801,356 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR788DXU biological_replicate 2 technical_replicate 2_1 antibody FOXA3 assay TF ChIP-seq file_format bed narrowPeak file_size 93,541 downloaded_date 06/12/2022 release_date 01/07/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF114PBJ.bed.gz processed_file_md5 b9db3d7119ef73ef895c9c4d89ab9bf2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF114PBJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF114PBJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF114PBJ/@@download/ENCFF114PBJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF114PBJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 180153ac3ff089d796a4bd12b3c759ac data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE209148;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-01-13,2022-01-04;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq FOXA3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR788DXU] [Life stage: Adult] [TF ChIP-seq peaks]
FOXA3 • K562 NGENCAUAKJKAVW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCAUAKJKAVW data_source ENCODE Download track Download number_of_intervals 7,713 bp_covered 2,462,634 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR231ZVN biological_replicate 1 technical_replicate 1_1 antibody FOXA3 assay TF ChIP-seq file_format bed narrowPeak file_size 151,644 downloaded_date 06/12/2022 release_date 07/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF932KAZ.bed.gz processed_file_md5 4edd1876803040ea1d713fd0eddf7e3e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF932KAZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF932KAZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF932KAZ/@@download/ENCFF932KAZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF932KAZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f75287ef035e63f354aab7dbdcdc33f5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE169922;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-03,2020-06-30,2022-01-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq FOXA3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR231ZVN] [Life stage: Adult] [TF ChIP-seq peaks]
FOXA3 • K562 NGENCB55QS3LU4 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCB55QS3LU4 data_source ENCODE Download track Download number_of_intervals 11,077 bp_covered 3,589,454 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR231ZVN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA3 assay TF ChIP-seq file_format bed narrowPeak file_size 213,048 downloaded_date 06/12/2022 release_date 07/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF781VSC.bed.gz processed_file_md5 0cb7fa178c57b92d37b18cbc8c2b4d3b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF781VSC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF781VSC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF781VSC/@@download/ENCFF781VSC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF781VSC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 758e1e7f9041edcb56612a969213cf8b data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE169922;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-03,2020-06-30,2022-01-20;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq FOXA3 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR231ZVN] [Life stage: Adult] [TF ChIP-seq peaks]
FOXA3 • K562 NGENCFNH4MLPNI • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCFNH4MLPNI data_source ENCODE Download track Download number_of_intervals 8,768 bp_covered 3,934,493 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR788DXU biological_replicate 1 technical_replicate 1_1 antibody FOXA3 assay TF ChIP-seq file_format bed narrowPeak file_size 168,608 downloaded_date 06/12/2022 release_date 01/07/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF221PRX.bed.gz processed_file_md5 f533124f0ec30af01dc55e10c2d66966 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF221PRX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF221PRX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF221PRX/@@download/ENCFF221PRX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF221PRX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f70675aca830550dda4f3ae0cd26e879 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE209148;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-01-13,2022-01-04;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq FOXA3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR788DXU] [Life stage: Adult] [TF ChIP-seq peaks]
FOXA3 • HepG2 NGENCJMXR6YFLJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCJMXR6YFLJ data_source ENCODE Download track Download number_of_intervals 47,050 bp_covered 14,339,854 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR092OVN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXA3 assay TF ChIP-seq file_format bed narrowPeak file_size 813,764 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF225UWX.bed.gz processed_file_md5 8b63b25a6acf03dce482c690878e848b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF225UWX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF225UWX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF225UWX/@@download/ENCFF225UWX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF225UWX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d05c563825982a89091b493453a41772 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=FactorBook:ENCSR092OVN,GEO:GSE95915;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-11-08,2016-10-11;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq FOXA3 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR092OVN] [Life stage: Child] [TF ChIP-seq peaks]