FOXK2 • HepG2 NGENCXG5WUZD4Z • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCXG5WUZD4Z data_source ENCODE Download track Download number_of_intervals 8,460 bp_covered 2,676,624 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR171FUX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXK2 assay TF ChIP-seq file_format bed narrowPeak file_size 153,843 downloaded_date 06/12/2022 release_date 12/08/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF299LRS.bed.gz processed_file_md5 a32eb130365e048f7bca3a08758d0b2a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF299LRS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF299LRS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF299LRS/@@download/ENCFF299LRS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF299LRS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 832f511514f1c241e693a538d79a7603 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR171FUX,GEO:GSE91547;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-04-22,2014-07-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq FOXK2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR171FUX] [Life stage: Child] [TF ChIP-seq peaks]
FOXK2 • MCF-7 NGENCYKWY7VTTG • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCYKWY7VTTG data_source ENCODE Download track Download number_of_intervals 826 bp_covered 239,492 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR465VLK biological_replicate 2 technical_replicate 2_1 antibody FOXK2 assay TF ChIP-seq file_format bed narrowPeak file_size 16,784 downloaded_date 06/12/2022 release_date 12/08/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF890NTW.bed.gz processed_file_md5 b68674cb0918a623e5542161797979c3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF890NTW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF890NTW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF890NTW/@@download/ENCFF890NTW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF890NTW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 07a71e03329fe7f920816f0995a2f2f9 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=GEO:GSE91785,FactorBook:ENCSR465VLK;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-06-14,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 2) TF ChIP-seq FOXK2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR465VLK] [Life stage: Adult] [TF ChIP-seq peaks]
FOXK2 • HepG2 NGENCYPYXQTH5F • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCYPYXQTH5F data_source ENCODE Download track Download number_of_intervals 6,794 bp_covered 2,178,791 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR171FUX biological_replicate 2 technical_replicate 2_1 antibody FOXK2 assay TF ChIP-seq file_format bed narrowPeak file_size 119,501 downloaded_date 06/12/2022 release_date 12/08/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF646HYZ.bed.gz processed_file_md5 685f3ae9e934a046930be67e49f88151 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF646HYZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF646HYZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF646HYZ/@@download/ENCFF646HYZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF646HYZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5b4b2024a0ccc34bf073bf881aca607a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR171FUX,GEO:GSE91547;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-04-22,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq FOXK2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR171FUX] [Life stage: Child] [TF ChIP-seq peaks]
FOXK2 • HEK293T NGENCZCBX5YN3W • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293T TF Show metadata Download track Track metadata identifier NGENCZCBX5YN3W data_source ENCODE Download track Download number_of_intervals 1,518 bp_covered 591,409 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293T biosample_type Cell line biosample_term_id EFO:0001184 tissue_category Kidney encode_experiment_id ENCSR872BOU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXK2 assay TF ChIP-seq file_format bed narrowPeak file_size 30,694 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF745GCJ.bed.gz processed_file_md5 2b488b796d9d33bede52f9c62b224a5b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF745GCJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF745GCJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF745GCJ/@@download/ENCFF745GCJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF745GCJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b379dad125420671be3d3658f9e7c3f4 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293T;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE92123,FactorBook:ENCSR872BOU;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-11-18,2016-11-01;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HEK293T;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001184;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293T (repl. 1, 2) TF ChIP-seq FOXK2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR872BOU] [Life stage: Embryonic] [TF ChIP-seq peaks]
FOXK2 • HepG2 NGFTB2HHSUP4KW • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB2HHSUP4KW data_source Factorbook Download track Download number_of_intervals 9,103 bp_covered 136,545 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR171FUX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXK2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 119,167 downloaded_date 07/10/2024 release_date 04/22/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF260APL_TKCTTTYTTTSTTTT_sorted.bed.gz processed_file_md5 20409b86e41dd827d124e61a8fcf7342 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF260APL_TKCTTTYTTTSTTTT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF260APL_TKCTTTYTTTSTTTT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF260APL_TKCTTTYTTTSTTTT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF260APL_TKCTTTYTTTSTTTT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c8d4a3fca9a69a14fd1d3553e026339e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF260APL;ENCODE_bigBed_id=ENCFF068YAS;PMID=34755879;Motif_sequence=TKCTTTYTTTSTTTT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding FOXK2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR171FUX] [Life stage: Child] [TFBS]
FOXK2 • HEK293T NGFTBB2OXPZET3 • Factorbook34755879 Motif finding HEK293T TFBS Show metadata Download track Track metadata identifier NGFTBB2OXPZET3 data_source Factorbook Download track Download number_of_intervals 211 bp_covered 1,899 output_type transcription factor binding sites all genome_build hg38 cell_type HEK293T biosample_type Cell line biosample_term_id EFO:0001184 tissue_category Kidney encode_experiment_id ENCSR872BOU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXK2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,026 downloaded_date 07/10/2024 release_date 11/18/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF226PMF_CACTTCCGG_sorted.bed.gz processed_file_md5 bd02bf76439e01c2afdf6d20a9dbb1a3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF226PMF_CACTTCCGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF226PMF_CACTTCCGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF226PMF_CACTTCCGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF226PMF_CACTTCCGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c6392b6f41521d7c019771a68081cae1 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293T;Original_cell_type=HEK293T;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF226PMF;ENCODE_bigBed_id=ENCFF745GCJ;PMID=34755879;Motif_sequence=CACTTCCGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001184;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293T (repl. 1, 2) Motif finding FOXK2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR872BOU] [TFBS]
FOXK2 • GM12878 NGFTBDMA76MJYT • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBDMA76MJYT data_source Factorbook Download track Download number_of_intervals 1,278 bp_covered 19,170 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR861JUQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXK2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 23,558 downloaded_date 07/10/2024 release_date 01/27/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF639XYN_VAVAATGTAAACARG_sorted.bed.gz processed_file_md5 87bf03210be7c2a9a98496df84f0d8a4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF639XYN_VAVAATGTAAACARG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF639XYN_VAVAATGTAAACARG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF639XYN_VAVAATGTAAACARG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF639XYN_VAVAATGTAAACARG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3098aca508d9eb0507acea66c8628ba6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF639XYN;ENCODE_bigBed_id=ENCFF546FJN;PMID=34755879;Motif_sequence=VAVAATGTAAACARG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding FOXK2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR861JUQ] [TFBS]
FOXK2 • HEK293T NGFTBJD2Y4H4VJ • Factorbook34755879 Motif finding HEK293T TFBS Show metadata Download track Track metadata identifier NGFTBJD2Y4H4VJ data_source Factorbook Download track Download number_of_intervals 720 bp_covered 9,360 output_type transcription factor binding sites all genome_build hg38 cell_type HEK293T biosample_type Cell line biosample_term_id EFO:0001184 tissue_category Kidney encode_experiment_id ENCSR872BOU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXK2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 12,194 downloaded_date 07/10/2024 release_date 11/18/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF226PMF_DAWRTAAACADSV_sorted.bed.gz processed_file_md5 2cd394408c32a744837ff8a7e85961c5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF226PMF_DAWRTAAACADSV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF226PMF_DAWRTAAACADSV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF226PMF_DAWRTAAACADSV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF226PMF_DAWRTAAACADSV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4565d2cf2794fff52de226cd1061be75 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293T;Original_cell_type=HEK293T;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF226PMF;ENCODE_bigBed_id=ENCFF745GCJ;PMID=34755879;Motif_sequence=DAWRTAAACADSV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001184;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293T (repl. 1, 2) Motif finding FOXK2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR872BOU] [TFBS]
FOXK2 • HepG2 NGFTBM2RXQXFRR • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBM2RXQXFRR data_source Factorbook Download track Download number_of_intervals 3,406 bp_covered 51,090 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR171FUX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXK2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 61,479 downloaded_date 07/10/2024 release_date 04/22/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF260APL_BCBTGTTTACWTTBN_sorted.bed.gz processed_file_md5 63fbc4456689178f095ba66a5196039d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF260APL_BCBTGTTTACWTTBN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF260APL_BCBTGTTTACWTTBN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF260APL_BCBTGTTTACWTTBN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF260APL_BCBTGTTTACWTTBN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7254923e58bc15e7a6e4b2f6c8d21bc7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF260APL;ENCODE_bigBed_id=ENCFF068YAS;PMID=34755879;Motif_sequence=BCBTGTTTACWTTBN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding FOXK2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR171FUX] [Life stage: Child] [TFBS]
FOXK2 • MCF-7 NGFTBU6Z3BPUGX • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBU6Z3BPUGX data_source Factorbook Download track Download number_of_intervals 16,657 bp_covered 499,710 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR465VLK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXK2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 239,836 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF222VDW_CHTCHYYYYYTCYTTCYTYYYYTCCHTCHY_sorted.bed.gz processed_file_md5 1c6ae0ef633bf6939e1e5a717c3b957c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF222VDW_CHTCHYYYYYTCYTTCYTYYYYTCCHTCHY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF222VDW_CHTCHYYYYYTCYTTCYTYYYYTCCHTCHY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF222VDW_CHTCHYYYYYTCYTTCYTYYYYTCCHTCHY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF222VDW_CHTCHYYYYYTCYTTCYTYYYYTCCHTCHY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7ac9ab6ac2ecad65e5dc9d82e1d33713 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF222VDW;ENCODE_bigBed_id=ENCFF913VBE;PMID=34755879;Motif_sequence=CHTCHYYYYYTCYTTCYTYYYYTCCHTCHY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding FOXK2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR465VLK] [Life stage: Adult] [TFBS]
FOXK2 • K562 NGFTBV4JTCTP7N • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBV4JTCTP7N data_source Factorbook Download track Download number_of_intervals 5,743 bp_covered 80,402 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR302AWT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXK2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 97,993 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF702AQS_BBSYTGTTTACATH_sorted.bed.gz processed_file_md5 6240e9771a7a4c2c3ab4ee9890a379c6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF702AQS_BBSYTGTTTACATH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF702AQS_BBSYTGTTTACATH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF702AQS_BBSYTGTTTACATH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF702AQS_BBSYTGTTTACATH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d39c2ffd5c4f3cf0c89cb79a93236e5e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF702AQS;ENCODE_bigBed_id=ENCFF245WKP;PMID=34755879;Motif_sequence=BBSYTGTTTACATH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding FOXK2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR302AWT] [Life stage: Adult] [TFBS]
FOXK2 • K562 NGFTBVEFFMVDFI • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBVEFFMVDFI data_source Factorbook Download track Download number_of_intervals 2,609 bp_covered 23,481 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR508DQA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXK2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 28,855 downloaded_date 07/10/2024 release_date 04/22/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF058KJG_CCGGAAGTK_sorted.bed.gz processed_file_md5 5861cefba3788ae45ad7e0b6d16ec063 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF058KJG_CCGGAAGTK_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF058KJG_CCGGAAGTK_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF058KJG_CCGGAAGTK.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF058KJG_CCGGAAGTK.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8f7e270ab8cb2252508b13938fca2b5f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF058KJG;ENCODE_bigBed_id=ENCFF800TKS;PMID=34755879;Motif_sequence=CCGGAAGTK;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding FOXK2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR508DQA] [Life stage: Adult] [TFBS]
FOXK2 • MCF-7 NGFTBWNPJECYC3 • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBWNPJECYC3 data_source Factorbook Download track Download number_of_intervals 6,232 bp_covered 186,960 output_type transcription factor binding sites significant genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR465VLK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXK2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 89,264 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF222VDW_CHTCHYYYYYTCYTTCYTYYYYTCCHTCHY_filtered.bed.gz processed_file_md5 3d8ff7eb6011bbc5021d101bbacba955 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF222VDW_CHTCHYYYYYTCYTTCYTYYYYTCCHTCHY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF222VDW_CHTCHYYYYYTCYTTCYTYYYYTCCHTCHY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF222VDW_CHTCHYYYYYTCYTTCYTYYYYTCCHTCHY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF222VDW_CHTCHYYYYYTCYTTCYTYYYYTCCHTCHY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7ac9ab6ac2ecad65e5dc9d82e1d33713 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF222VDW;ENCODE_bigBed_id=ENCFF913VBE;PMID=34755879;Motif_sequence=CHTCHYYYYYTCYTTCYTYYYYTCCHTCHY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding FOXK2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR465VLK] [Life stage: Adult] [TFBS]
FOXK2 • K562 NGFTBY5LKVWNSF • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBY5LKVWNSF data_source Factorbook Download track Download number_of_intervals 6,033 bp_covered 78,429 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR508DQA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXK2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 93,778 downloaded_date 07/10/2024 release_date 04/22/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF058KJG_CYTGTTTACATHB_sorted.bed.gz processed_file_md5 ef7819707153dbababa88b33fb31ca24 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF058KJG_CYTGTTTACATHB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF058KJG_CYTGTTTACATHB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF058KJG_CYTGTTTACATHB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF058KJG_CYTGTTTACATHB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3493175b1db4450487c6b50df9024686 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF058KJG;ENCODE_bigBed_id=ENCFF800TKS;PMID=34755879;Motif_sequence=CYTGTTTACATHB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding FOXK2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR508DQA] [Life stage: Adult] [TFBS]
Reference annotation (FOXK2) NGHOMN7N5ZVBXD • HOMER20513432 Motif finding Reference annotation (FOXK2) TFBS Show metadata Download track Track metadata identifier NGHOMN7N5ZVBXD data_source HOMER Download track Download number_of_intervals 1,222,523 bp_covered 14,670,276 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody FOXK2 assay Motif finding file_format bed bed6+5 Homer file_size 14,541,805 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/FOXK2_Forkhead.hg38.processed.bed.gz processed_file_md5 c2314372375be6d2418a4bfcbe9ad2b1 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/FOXK2_Forkhead.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/FOXK2_Forkhead.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=FOXK2;DNA_binding_domain=Forkhead;Cell_type=U2OS;Assay=ChIP-Seq;Origin=E-MTAB-2204;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding FOXK2 transcription factor binding sites (bed6+5 Homer) [TFBS]
Reference annotation (FoxL2) NGHOMBPQJIX7CO • HOMER20513432 Motif finding Reference annotation (FoxL2) TFBS Show metadata Download track Track metadata identifier NGHOMBPQJIX7CO data_source HOMER Download track Download number_of_intervals 2,605,244 bp_covered 31,262,928 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody FoxL2 assay Motif finding file_format bed bed6+5 Homer file_size 29,646,416 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/FoxL2_Forkhead.hg38.processed.bed.gz processed_file_md5 63d542eb7b6dffa4f8b13d73b881067b wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/FoxL2_Forkhead.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/FoxL2_Forkhead.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=FoxL2;DNA_binding_domain=Forkhead;Cell_type=Ovary;Assay=ChIP-Seq;Origin=GSE60858;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding FoxL2 transcription factor binding sites (bed6+5 Homer) [TFBS]
FOXM1 • HEK293T NGENC2INB6FWZR • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293T TF Show metadata Download track Track metadata identifier NGENC2INB6FWZR data_source ENCODE Download track Download number_of_intervals 3,206 bp_covered 863,022 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HEK293T biosample_type Cell line biosample_term_id EFO:0001184 tissue_category Kidney encode_experiment_id ENCSR831EIW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXM1 assay TF ChIP-seq file_format bed narrowPeak file_size 64,514 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF070ZWB.bed.gz processed_file_md5 cd9186a8e53292be5f242765c9f75e86 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF070ZWB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF070ZWB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF070ZWB/@@download/ENCFF070ZWB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF070ZWB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 47f33145b642a0b4f1a11ea83d2724ba data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293T;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE105901;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-04-14,2016-11-01;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293T;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001184;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293T (repl. 1, 2) TF ChIP-seq FOXM1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR831EIW] [Life stage: Embryonic] [TF ChIP-seq peaks]
FOXM1 • K562 NGENC2JIBTGEMV • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC2JIBTGEMV data_source ENCODE Download track Download number_of_intervals 6,496 bp_covered 3,937,111 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR438RRM biological_replicate 1, 2 technical_replicate 1_2, 2_2 antibody FOXM1 assay TF ChIP-seq file_format bed narrowPeak file_size 128,318 downloaded_date 06/12/2022 release_date 02/07/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF490XGT.bed.gz processed_file_md5 7ff1699d207f7b825c13bf84c58f32c4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF490XGT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF490XGT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF490XGT/@@download/ENCFF490XGT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF490XGT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1b92780f190c8d12863fde8fd36221e3 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXM1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE209315;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-03-28,2020-06-26;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.9.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq FOXM1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR438RRM] [Life stage: Adult] [TF ChIP-seq peaks]
FOXM1 • MCF-7 NGENC2Z7ME2BYI • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENC2Z7ME2BYI data_source ENCODE Download track Download number_of_intervals 5,900 bp_covered 2,007,606 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000BUJ biological_replicate 1 technical_replicate 1_1 antibody FOXM1 assay TF ChIP-seq file_format bed narrowPeak file_size 109,142 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF718XFU.bed.gz processed_file_md5 7644476b4406a93c882d03d2dfd3f315 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF718XFU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF718XFU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF718XFU/@@download/ENCFF718XFU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF718XFU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f5f5068b54967b719ab04c3b81636611 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSM1010769,UCSC-ENCODE-hg19:wgEncodeEH003279;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-09-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF7,MCF-7 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1) TF ChIP-seq FOXM1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BUJ] [Life stage: Adult] [TF ChIP-seq peaks]
FOXM1 • SK-N-SH NGENC4SSXR6NFN • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq SK-N-SH TF Show metadata Download track Track metadata identifier NGENC4SSXR6NFN data_source ENCODE Download track Download number_of_intervals 7,023 bp_covered 3,337,195 output_type IDR thresholded peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR000BTB biological_replicate 1 technical_replicate 1_1 antibody FOXM1 assay TF ChIP-seq file_format bed narrowPeak file_size 125,334 downloaded_date 06/12/2022 release_date 07/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF386XAD.bed.gz processed_file_md5 c63bd7dcf140a9ef29ddd07606606db4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF386XAD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF386XAD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF386XAD/@@download/ENCFF386XAD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF386XAD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8c2179219c7b94abe3227d4bb43de35a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSM1010750,UCSC-ENCODE-hg19:wgEncodeEH003243;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-09-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 1) TF ChIP-seq FOXM1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BTB] [Life stage: Child] [TF ChIP-seq peaks]