FOXP1 • HepG2 NGFTB5ED2CPCDQ • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB5ED2CPCDQ data_source Factorbook Download track Download number_of_intervals 95,131 bp_covered 2,853,930 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR029LBT biological_replicate 3, 4 technical_replicate 3_1, 4_1 antibody FOXP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,341,593 downloaded_date 07/10/2024 release_date 01/27/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF401QJU_MAACAAMAACAAMAACAAMAACAAMAACAA_sorted.bed.gz processed_file_md5 8407fb34cc591a2c195477c1d1d87f0d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF401QJU_MAACAAMAACAAMAACAAMAACAAMAACAA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF401QJU_MAACAAMAACAAMAACAAMAACAAMAACAA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF401QJU_MAACAAMAACAAMAACAAMAACAAMAACAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF401QJU_MAACAAMAACAAMAACAAMAACAAMAACAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 49a207851cc58e7f4ccf3be125924cde data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF401QJU;ENCODE_bigBed_id=ENCFF717IHQ;PMID=34755879;Motif_sequence=MAACAAMAACAAMAACAAMAACAAMAACAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 3, 4) Motif finding FOXP1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR029LBT] [Life stage: Child] [TFBS]
FOXP1 • HepG2 NGFTB66UJWTAKN • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB66UJWTAKN data_source Factorbook Download track Download number_of_intervals 31,243 bp_covered 937,290 output_type transcription factor binding sites significant genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR029LBT biological_replicate 3, 4 technical_replicate 3_1, 4_1 antibody FOXP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 430,318 downloaded_date 07/10/2024 release_date 01/27/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF401QJU_MAACAAMAACAAMAACAAMAACAAMAACAA_filtered.bed.gz processed_file_md5 ff7b0c4e973e12c4ed015c402ce3c144 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF401QJU_MAACAAMAACAAMAACAAMAACAAMAACAA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF401QJU_MAACAAMAACAAMAACAAMAACAAMAACAA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF401QJU_MAACAAMAACAAMAACAAMAACAAMAACAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF401QJU_MAACAAMAACAAMAACAAMAACAAMAACAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 49a207851cc58e7f4ccf3be125924cde data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF401QJU;ENCODE_bigBed_id=ENCFF717IHQ;PMID=34755879;Motif_sequence=MAACAAMAACAAMAACAAMAACAAMAACAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 3, 4) Motif finding FOXP1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR029LBT] [Life stage: Child] [TFBS]
FOXP1 • HepG2 NGFTBABD47W6K2 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBABD47W6K2 data_source Factorbook Download track Download number_of_intervals 5,486 bp_covered 60,346 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR029LBT biological_replicate 3, 4 technical_replicate 3_1, 4_1 antibody FOXP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 67,144 downloaded_date 07/10/2024 release_date 01/27/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF401QJU_TKTGTTTACHT_sorted.bed.gz processed_file_md5 6232f407b92564976bb2576be5b533ce wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF401QJU_TKTGTTTACHT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF401QJU_TKTGTTTACHT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF401QJU_TKTGTTTACHT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF401QJU_TKTGTTTACHT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 815058e3eae6c154a2112fa874ffb31c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF401QJU;ENCODE_bigBed_id=ENCFF717IHQ;PMID=34755879;Motif_sequence=TKTGTTTACHT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 3, 4) Motif finding FOXP1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR029LBT] [Life stage: Child] [TFBS]
FOXP1 • HepG2 NGFTBHPLTZPRRV • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBHPLTZPRRV data_source Factorbook Download track Download number_of_intervals 2,584 bp_covered 54,264 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR029LBT biological_replicate 3, 4 technical_replicate 3_1, 4_1 antibody FOXP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 48,582 downloaded_date 07/10/2024 release_date 01/27/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF401QJU_YRACAGAGYGAGACTCYGTCT_sorted.bed.gz processed_file_md5 c7613f24df956afb5612c69233099c46 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF401QJU_YRACAGAGYGAGACTCYGTCT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF401QJU_YRACAGAGYGAGACTCYGTCT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF401QJU_YRACAGAGYGAGACTCYGTCT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF401QJU_YRACAGAGYGAGACTCYGTCT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 de49c62bf0cb3984e986b85556725ebb data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF401QJU;ENCODE_bigBed_id=ENCFF717IHQ;PMID=34755879;Motif_sequence=YRACAGAGYGAGACTCYGTCT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 3, 4) Motif finding FOXP1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR029LBT] [Life stage: Child] [TFBS]
FOXP1 • HepG2 NGFTBNFHAOIMGT • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBNFHAOIMGT data_source Factorbook Download track Download number_of_intervals 21,530 bp_covered 236,830 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR029LBT biological_replicate 3, 4 technical_replicate 3_1, 4_1 antibody FOXP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 195,184 downloaded_date 07/10/2024 release_date 01/27/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF401QJU_AACAAMAAMAA_sorted.bed.gz processed_file_md5 ef7449f396b564573e6201c897147ef6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF401QJU_AACAAMAAMAA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF401QJU_AACAAMAAMAA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF401QJU_AACAAMAAMAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF401QJU_AACAAMAAMAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8c8783079565542949dcac166780bf71 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF401QJU;ENCODE_bigBed_id=ENCFF717IHQ;PMID=34755879;Motif_sequence=AACAAMAAMAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 3, 4) Motif finding FOXP1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR029LBT] [Life stage: Child] [TFBS]
FOXP1 • HepG2 NGFTBOQJSIER4F • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBOQJSIER4F data_source Factorbook Download track Download number_of_intervals 11,685 bp_covered 128,535 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR369YUK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 158,597 downloaded_date 07/10/2024 release_date 02/10/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF862ZEX_WVDGTAAACAN_sorted.bed.gz processed_file_md5 12739a404cf73c33b4d3d5c2e8ae568c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF862ZEX_WVDGTAAACAN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF862ZEX_WVDGTAAACAN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF862ZEX_WVDGTAAACAN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF862ZEX_WVDGTAAACAN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 492414c7790dcf5166c8154ab98e3287 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP1;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF862ZEX;ENCODE_bigBed_id=ENCFF823ERM;PMID=34755879;Motif_sequence=WVDGTAAACAN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding FOXP1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR369YUK] [Life stage: Child] [TFBS]
FOXP1 • HepG2 NGFTBUP3UJ54S5 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBUP3UJ54S5 data_source Factorbook Download track Download number_of_intervals 756 bp_covered 15,876 output_type transcription factor binding sites significant genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR029LBT biological_replicate 3, 4 technical_replicate 3_1, 4_1 antibody FOXP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 12,424 downloaded_date 07/10/2024 release_date 01/27/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF401QJU_YRACAGAGYGAGACTCYGTCT_filtered.bed.gz processed_file_md5 0b2b079ba7dfeb20b4f06ef722fbb493 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF401QJU_YRACAGAGYGAGACTCYGTCT_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF401QJU_YRACAGAGYGAGACTCYGTCT_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF401QJU_YRACAGAGYGAGACTCYGTCT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF401QJU_YRACAGAGYGAGACTCYGTCT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 de49c62bf0cb3984e986b85556725ebb data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF401QJU;ENCODE_bigBed_id=ENCFF717IHQ;PMID=34755879;Motif_sequence=YRACAGAGYGAGACTCYGTCT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 3, 4) Motif finding FOXP1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR029LBT] [Life stage: Child] [TFBS]
FOXP1 • HepG2 NGFTBVPTQ26RNX • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBVPTQ26RNX data_source Factorbook Download track Download number_of_intervals 4,003 bp_covered 44,033 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR369YUK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 57,051 downloaded_date 07/10/2024 release_date 02/10/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF862ZEX_GTTGTGCAATG_sorted.bed.gz processed_file_md5 56552b1eb052ffb1d5a771d63dc288aa wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF862ZEX_GTTGTGCAATG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF862ZEX_GTTGTGCAATG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF862ZEX_GTTGTGCAATG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF862ZEX_GTTGTGCAATG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1bf5353f34a218a37d6a904f2f4a8953 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP1;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF862ZEX;ENCODE_bigBed_id=ENCFF823ERM;PMID=34755879;Motif_sequence=GTTGTGCAATG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding FOXP1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR369YUK] [Life stage: Child] [TFBS]
Reference annotation (FOXP1) NGHOMDBRG7A26L • HOMER20513432 Motif finding Reference annotation (FOXP1) TFBS Show metadata Download track Track metadata identifier NGHOMDBRG7A26L data_source HOMER Download track Download number_of_intervals 882,050 bp_covered 10,584,600 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody FOXP1 assay Motif finding file_format bed bed6+5 Homer file_size 10,012,697 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/FOXP1_Forkhead.hg38.processed.bed.gz processed_file_md5 753ffe211865f8f84e84774fd415db3e wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/FOXP1_Forkhead.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/FOXP1_Forkhead.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=FOXP1;DNA_binding_domain=Forkhead;Cell_type=H9;Assay=ChIP-Seq;Origin=GSE31006;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding FOXP1 transcription factor binding sites (bed6+5 Homer) [TFBS]
FOXP2 • PFSK-1 NGENC4HCWM6TQH • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq PFSK-1 TF Show metadata Download track Track metadata identifier NGENC4HCWM6TQH data_source ENCODE Download track Download number_of_intervals 18,831 bp_covered 5,575,492 output_type optimal IDR thresholded peaks genome_build hg38 cell_type PFSK-1 biosample_type Cell line biosample_term_id EFO:0005234 tissue_category Brain encode_experiment_id ENCSR000BGA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXP2 assay TF ChIP-seq file_format bed narrowPeak file_size 320,682 downloaded_date 06/04/2018 release_date 01/05/2017 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF349WGE.bed.gz processed_file_md5 9472cb05e6466f33b077938076b22b5b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF349WGE.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF349WGE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF349WGE/@@download/ENCFF349WGE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF349WGE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fcf2703f6c8ebe41c98e443307f5fe8f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq optimal IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens PFSK-1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 22 months;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000BGA,GEO:GSM803480,UCSC-ENCODE-hg19:wgEncodeEH001460;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=IDR_final_optimal.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=PFSK-1;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=PFSK-1 cell;Analysis_title=ENCODE3 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005234;is_hg38_lifted=no system_category Nervous life_stage Child track_name ENCODE PFSK-1 (repl. 1, 2) TF ChIP-seq FOXP2 optimal IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BGA] [Life stage: Child] [TF ChIP-seq peaks]
FOXP2 • SK-N-MC NGENCDAAY7JNBG • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq SK-N-MC TF Show metadata Download track Track metadata identifier NGENCDAAY7JNBG data_source ENCODE Download track Download number_of_intervals 9,497 bp_covered 2,697,148 output_type conservative IDR thresholded peaks genome_build hg38 cell_type SK-N-MC biosample_type Cell line biosample_term_id EFO:0002860 tissue_category Brain encode_experiment_id ENCSR000BGB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXP2 assay TF ChIP-seq file_format bed narrowPeak file_size 189,801 downloaded_date 06/04/2018 release_date 01/05/2017 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF733BXL.bed.gz processed_file_md5 135669d794ddcf2aff5fec9517eacf77 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF733BXL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF733BXL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF733BXL/@@download/ENCFF733BXL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF733BXL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e007b720d3289d823df63c46b667555f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-MC;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 14 years;Reference=PMID:32728046;External_resources=GEO:GSM803353,UCSC-ENCODE-hg19:wgEncodeEH001461,FactorBook:ENCSR000BGB;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=IDR_final_conservative.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-MC;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNMc;Analysis_title=ENCODE3 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002860;is_hg38_lifted=no system_category Nervous life_stage Child track_name ENCODE SK-N-MC (repl. 1, 2) TF ChIP-seq FOXP2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BGB] [Life stage: Child] [TF ChIP-seq peaks]
FOXP2 • PFSK-1 NGENCV6DQV5NYL • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq PFSK-1 TF Show metadata Download track Track metadata identifier NGENCV6DQV5NYL data_source ENCODE Download track Download number_of_intervals 11,885 bp_covered 3,493,345 output_type conservative IDR thresholded peaks genome_build hg38 cell_type PFSK-1 biosample_type Cell line biosample_term_id EFO:0005234 tissue_category Brain encode_experiment_id ENCSR000BGA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXP2 assay TF ChIP-seq file_format bed narrowPeak file_size 201,597 downloaded_date 06/04/2018 release_date 01/05/2017 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF354YIN.bed.gz processed_file_md5 26a241f6f0e3c8a89bd08fdccdb379d3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF354YIN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF354YIN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF354YIN/@@download/ENCFF354YIN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF354YIN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c9bfc2c5ebbd4c53025fb7ef4956834c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens PFSK-1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 22 months;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000BGA,GEO:GSM803480,UCSC-ENCODE-hg19:wgEncodeEH001460;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=IDR_final_conservative.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=PFSK-1;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=PFSK-1 cell;Analysis_title=ENCODE3 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005234;is_hg38_lifted=no system_category Nervous life_stage Child track_name ENCODE PFSK-1 (repl. 1, 2) TF ChIP-seq FOXP2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BGA] [Life stage: Child] [TF ChIP-seq peaks]
FOXP2 • SK-N-MC NGENCW2SEEKK2W • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq SK-N-MC TF Show metadata Download track Track metadata identifier NGENCW2SEEKK2W data_source ENCODE Download track Download number_of_intervals 10,192 bp_covered 2,894,528 output_type optimal IDR thresholded peaks genome_build hg38 cell_type SK-N-MC biosample_type Cell line biosample_term_id EFO:0002860 tissue_category Brain encode_experiment_id ENCSR000BGB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXP2 assay TF ChIP-seq file_format bed narrowPeak file_size 202,785 downloaded_date 06/04/2018 release_date 01/05/2017 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF865YOS.bed.gz processed_file_md5 8b3231444f01ee662c66d47c72092e96 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF865YOS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF865YOS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF865YOS/@@download/ENCFF865YOS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF865YOS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 085d3593db838f506c1f23056b7c12e1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq optimal IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-MC;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 14 years;Reference=PMID:32728046;External_resources=GEO:GSM803353,UCSC-ENCODE-hg19:wgEncodeEH001461,FactorBook:ENCSR000BGB;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=IDR_final_optimal.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=SK-N-MC;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNMc;Analysis_title=ENCODE3 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002860;is_hg38_lifted=no system_category Nervous life_stage Child track_name ENCODE SK-N-MC (repl. 1, 2) TF ChIP-seq FOXP2 optimal IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BGB] [Life stage: Child] [TF ChIP-seq peaks]
FOXP4 • HepG2 NGENCBTXWGJOFW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCBTXWGJOFW data_source ENCODE Download track Download number_of_intervals 28,174 bp_covered 11,428,440 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR232LLP biological_replicate 1 technical_replicate 1_1 antibody FOXP4 assay TF ChIP-seq file_format bed narrowPeak file_size 519,428 downloaded_date 06/12/2022 release_date 07/06/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF730AUK.bed.gz processed_file_md5 72e797e4488a6b8aa33cf65f5d660266 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF730AUK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF730AUK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF730AUK/@@download/ENCFF730AUK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF730AUK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7583df059ac18d5ad4fef132f8f0a0d6 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE169938;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-08,2020-06-26;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq FOXP4 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR232LLP] [Life stage: Child] [TF ChIP-seq peaks]
FOXP4 • HepG2 NGENCGEPOBZV3Y • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCGEPOBZV3Y data_source ENCODE Download track Download number_of_intervals 35,669 bp_covered 14,342,324 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR232LLP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXP4 assay TF ChIP-seq file_format bed narrowPeak file_size 667,342 downloaded_date 06/12/2022 release_date 07/06/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF462ULY.bed.gz processed_file_md5 601a55a108bd285d5d039f2860fc8dbb wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF462ULY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF462ULY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF462ULY/@@download/ENCFF462ULY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF462ULY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7f65c2340dd8e0674ff65ec8253a29d5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE169938;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-08,2020-06-26;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq FOXP4 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR232LLP] [Life stage: Child] [TF ChIP-seq peaks]
FOXP4 • K562 NGENCHEA5W7WPM • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCHEA5W7WPM data_source ENCODE Download track Download number_of_intervals 4,362 bp_covered 1,609,041 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR084WHZ biological_replicate 1 technical_replicate 1_1 antibody FOXP4 assay TF ChIP-seq file_format bed narrowPeak file_size 85,027 downloaded_date 05/15/2024 release_date 08/19/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF874TXF.bed.gz processed_file_md5 932ee9d8841abff5469e3a8686dbcd98 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF874TXF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF874TXF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF874TXF/@@download/ENCFF874TXF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF874TXF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 76215781c0d6710fd596df05b1d4296b data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE231049;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-23,2022-01-04;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq FOXP4 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR084WHZ] [Life stage: Adult] [TF ChIP-seq peaks]
FOXP4 • HepG2 NGENCKQMEOOH6F • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCKQMEOOH6F data_source ENCODE Download track Download number_of_intervals 35,475 bp_covered 14,259,932 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR232LLP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXP4 assay TF ChIP-seq file_format bed narrowPeak file_size 663,440 downloaded_date 06/12/2022 release_date 07/06/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF570AQZ.bed.gz processed_file_md5 4e262f3ed12911cc4ecdbbeb87c3f0f7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF570AQZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF570AQZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF570AQZ/@@download/ENCFF570AQZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF570AQZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3f020ef0d1c6638693ac094bbb4a3a2a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE169938;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-08,2020-06-26;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq FOXP4 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR232LLP] [Life stage: Child] [TF ChIP-seq peaks]
FOXP4 • WTC11 NGENCOHC37AKXV • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCOHC37AKXV data_source ENCODE Download track Download number_of_intervals 11,399 bp_covered 4,251,589 output_type conservative IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR507RVF biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody FOXP4 assay TF ChIP-seq file_format bed narrowPeak file_size 219,764 downloaded_date 05/15/2024 release_date 07/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF016PKF.bed.gz processed_file_md5 867fd4d87655f00822fb01e2acbeb50b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF016PKF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF016PKF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF016PKF/@@download/ENCFF016PKF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF016PKF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 27c31d25651622492f7f562a37845587 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE231242;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-15,2022-07-25;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) TF ChIP-seq FOXP4 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR507RVF] [Life stage: Adult] [TF ChIP-seq peaks]
FOXP4 • WTC11 NGENCP6EMUGQUS • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCP6EMUGQUS data_source ENCODE Download track Download number_of_intervals 10,802 bp_covered 3,874,965 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR507RVF biological_replicate 1 technical_replicate 1_1 antibody FOXP4 assay TF ChIP-seq file_format bed narrowPeak file_size 207,582 downloaded_date 05/15/2024 release_date 07/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF420WSL.bed.gz processed_file_md5 714879a4540d96d4de81ab4113f5f09b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF420WSL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF420WSL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF420WSL/@@download/ENCFF420WSL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF420WSL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3d09aae6bc36be923a43ddfdc26d43d1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE231242;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-15,2022-07-25;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1) TF ChIP-seq FOXP4 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR507RVF] [Life stage: Adult] [TF ChIP-seq peaks]
FOXP4 • K562 NGENCQMZDIOWPC • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCQMZDIOWPC data_source ENCODE Download track Download number_of_intervals 1,854 bp_covered 926,067 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR084WHZ biological_replicate 2 technical_replicate 2_1 antibody FOXP4 assay TF ChIP-seq file_format bed narrowPeak file_size 37,801 downloaded_date 05/15/2024 release_date 08/19/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF914EZN.bed.gz processed_file_md5 2c864b4a346d14ac13e8ee8b1d289028 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF914EZN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF914EZN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF914EZN/@@download/ENCFF914EZN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF914EZN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 61f493dccf9000abfab7d315250b496a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE231049;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-23,2022-01-04;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq FOXP4 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR084WHZ] [Life stage: Adult] [TF ChIP-seq peaks]