GABPA • Liver NGENCTHS7Y6MJU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Liver TF Show metadata Download track Track metadata identifier NGENCTHS7Y6MJU data_source ENCODE Download track Download number_of_intervals 18,820 bp_covered 9,326,936 output_type conservative IDR thresholded peaks genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR038GMB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay TF ChIP-seq file_format bed narrowPeak file_size 345,271 downloaded_date 06/12/2022 release_date 12/09/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF940AID.bed.gz processed_file_md5 fec74e988b739582f70bffa5e6cf9186 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF940AID.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF940AID.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF940AID/@@download/ENCFF940AID.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF940AID.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9267d82e4abe1872dcc4d3834303911e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens with nonobstructive coronary artery disease| liver tissue male adult (32 years);Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2,DREAM;Life_stage_age=adult 32 years;Reference=NR;External_resources=FactorBook:ENCSR038GMB,GEO:GSE95893;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-06-30,2016-01-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=liver;ENCODE_cell_slims=NR;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Adult track_name ENCODE Liver (repl. 1, 2) TF ChIP-seq GABPA conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR038GMB] [Life stage: Adult] [TF ChIP-seq peaks]
GABPA • HepG2 NGENCTIQ544M3O • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCTIQ544M3O data_source ENCODE Download track Download number_of_intervals 5,690 bp_covered 1,471,737 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BJK biological_replicate 2 technical_replicate 2_1 antibody GABPA assay TF ChIP-seq file_format bed narrowPeak file_size 106,135 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF434CFJ.bed.gz processed_file_md5 c0687555b8e26d9ca40bd6b2099a9d1f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF434CFJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF434CFJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF434CFJ/@@download/ENCFF434CFJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF434CFJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 099c84b81918e4eb02d934e45ceb7fc6 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001548,FactorBook:ENCSR000BJK,GEO:GSM803343;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq GABPA IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BJK] [Life stage: Child] [TF ChIP-seq peaks]
GABPA • H1-hESC NGENCU27YZXLEH • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENCU27YZXLEH data_source ENCODE Download track Download number_of_intervals 2,054 bp_covered 758,669 output_type IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BIW biological_replicate 2 technical_replicate 2_1 antibody GABPA assay TF ChIP-seq file_format bed narrowPeak file_size 35,785 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF514PBP.bed.gz processed_file_md5 1689b102a4e6b6ce3a93956ab6ea7df9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF514PBP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF514PBP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF514PBP/@@download/ENCFF514PBP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF514PBP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 dcac7d659199db1da23c9e33ae3dab7d data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=FactorBook:ENCSR000BIW,GEO:GSM803424,UCSC-ENCODE-hg19:wgEncodeEH001534;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 2) TF ChIP-seq GABPA IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BIW] [Life stage: Embryonic] [TF ChIP-seq peaks]
GABPA • HepG2 NGENCUV5JL5PA5 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCUV5JL5PA5 data_source ENCODE Download track Download number_of_intervals 7,604 bp_covered 2,141,789 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BJK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay TF ChIP-seq file_format bed narrowPeak file_size 145,016 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF944MJU.bed.gz processed_file_md5 c84af5de12b1f8d3e9508e4d2ca87d26 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF944MJU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF944MJU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF944MJU/@@download/ENCFF944MJU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF944MJU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 be46a773a525361b833261a6e208eebc data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001548,FactorBook:ENCSR000BJK,GEO:GSM803343;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq GABPA conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BJK] [Life stage: Child] [TF ChIP-seq peaks]
GABPA • MCF-7 NGENCVMOGSZDUU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCVMOGSZDUU data_source ENCODE Download track Download number_of_intervals 13,524 bp_covered 6,386,638 output_type conservative IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000BUK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay TF ChIP-seq file_format bed narrowPeak file_size 255,701 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF681AYE.bed.gz processed_file_md5 6fc96cd0df2fdafeb49da2901928133e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF681AYE.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF681AYE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF681AYE/@@download/ENCFF681AYE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF681AYE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 bff95deeab9ed6f8103baa50f1fc492a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=adult 69 years;Reference=NR;External_resources=FactorBook:ENCSR000BUK,GEO:GSM1010864,UCSC-ENCODE-hg19:wgEncodeEH003280;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-09-10;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq GABPA conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BUK] [Life stage: Adult] [TF ChIP-seq peaks]
GABPA • H1-hESC NGENCVO6NSQ5CZ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENCVO6NSQ5CZ data_source ENCODE Download track Download number_of_intervals 5,054 bp_covered 1,553,510 output_type conservative IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BIW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay TF ChIP-seq file_format bed narrowPeak file_size 91,479 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF754OFQ.bed.gz processed_file_md5 e9d2068462dd4b13ea5e39342304b51b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF754OFQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF754OFQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF754OFQ/@@download/ENCFF754OFQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF754OFQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f4e6da44a4db4af6f1834e9abc39f236 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=FactorBook:ENCSR000BIW,GEO:GSM803424,UCSC-ENCODE-hg19:wgEncodeEH001534;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq GABPA conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BIW] [Life stage: Embryonic] [TF ChIP-seq peaks]
GABPA • MCF-7 NGENCWGT3S5ZJZ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCWGT3S5ZJZ data_source ENCODE Download track Download number_of_intervals 14,817 bp_covered 7,003,510 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000BUK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay TF ChIP-seq file_format bed narrowPeak file_size 280,291 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF735CHO.bed.gz processed_file_md5 929d0df83162e647a3cfd3cdf22da454 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF735CHO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF735CHO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF735CHO/@@download/ENCFF735CHO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF735CHO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 99aa86672fc656566b7714a1eee91c24 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=adult 69 years;Reference=NR;External_resources=FactorBook:ENCSR000BUK,GEO:GSM1010864,UCSC-ENCODE-hg19:wgEncodeEH003280;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-09-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq GABPA IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BUK] [Life stage: Adult] [TF ChIP-seq peaks]
GABPA • Liver NGENCWISXXMN2E • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Liver TF Show metadata Download track Track metadata identifier NGENCWISXXMN2E data_source ENCODE Download track Download number_of_intervals 4,952 bp_covered 1,659,535 output_type IDR thresholded peaks genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR350ORK biological_replicate 2 technical_replicate 2_1 antibody GABPA assay TF ChIP-seq file_format bed narrowPeak file_size 90,450 downloaded_date 06/12/2022 release_date 12/08/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF375ZHP.bed.gz processed_file_md5 6cf7e6533415b9e83e812816818433aa wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF375ZHP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF375ZHP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF375ZHP/@@download/ENCFF375ZHP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF375ZHP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0e3adc2b7812391321d8b504e7b0a8d4 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens liver tissue female child (4 years);Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2,DREAM;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSE96133,FactorBook:ENCSR350ORK;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-09-09,2016-01-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=liver;ENCODE_cell_slims=NR;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE Liver (repl. 2) TF ChIP-seq GABPA IDR thresholded peaks (narrowPeak) [Experiment: ENCSR350ORK] [Life stage: Child] [TF ChIP-seq peaks]
GABPA • SK-N-SH NGENCWVRTGU3FZ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq SK-N-SH TF Show metadata Download track Track metadata identifier NGENCWVRTGU3FZ data_source ENCODE Download track Download number_of_intervals 11,367 bp_covered 4,266,944 output_type conservative IDR thresholded peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR000BTG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay TF ChIP-seq file_format bed narrowPeak file_size 223,840 downloaded_date 06/12/2022 release_date 07/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF311OKJ.bed.gz processed_file_md5 5f926bfedbd1876bda442a2ba9a858aa wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF311OKJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF311OKJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF311OKJ/@@download/ENCFF311OKJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF311OKJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c8f1b2e468b183184cff92ebdce9edaa data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSM1010739,FactorBook:ENCSR000BTG,UCSC-ENCODE-hg19:wgEncodeEH003248;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-09-10;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 1, 2) TF ChIP-seq GABPA conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BTG] [Life stage: Child] [TF ChIP-seq peaks]
GABPA • MCF-7 NGENCXDDK6RM2I • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCXDDK6RM2I data_source ENCODE Download track Download number_of_intervals 4,104 bp_covered 2,260,544 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR038RXU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay TF ChIP-seq file_format bed narrowPeak file_size 79,294 downloaded_date 06/12/2022 release_date 12/30/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF951HFC.bed.gz processed_file_md5 f1d4593b96e15093ab012c5e04ddd4a5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF951HFC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF951HFC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF951HFC/@@download/ENCFF951HFC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF951HFC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 82f70259806bbba3d55b522dba8a3c60 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7 stably expressing GABPA;Lab=Kevin White, UChicago;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=GEO:GSE105286,FactorBook:ENCSR038RXU;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-06-13,2016-05-18;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq GABPA IDR thresholded peaks (narrowPeak) [Experiment: ENCSR038RXU] [Life stage: Adult] [TF ChIP-seq peaks]
GABPA • HeLa-S3 NGENCXXZ2QUFVW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HeLa-S3 TF Show metadata Download track Track metadata identifier NGENCXXZ2QUFVW data_source ENCODE Download track Download number_of_intervals 7,554 bp_covered 1,808,899 output_type IDR thresholded peaks genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000BHS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay TF ChIP-seq file_format bed narrowPeak file_size 143,610 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF211VKG.bed.gz processed_file_md5 8140dedf749c75db3b0de354de0aba60 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF211VKG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF211VKG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF211VKG/@@download/ENCFF211VKG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF211VKG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 bf72ea40b472b7210aa9d986f189f857 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HeLa-S3;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 31 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000BHS,UCSC-ENCODE-hg19:wgEncodeEH001504,GEO:GSM803454;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE HeLa-S3 (repl. 1, 2) TF ChIP-seq GABPA IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BHS] [Life stage: Adult] [TF ChIP-seq peaks]
GABPA • HepG2 NGENCY7XGCLBP4 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCY7XGCLBP4 data_source ENCODE Download track Download number_of_intervals 15,084 bp_covered 5,730,141 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR269TNX biological_replicate 2 technical_replicate 2_1 antibody GABPA assay TF ChIP-seq file_format bed narrowPeak file_size 281,367 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF949MYK.bed.gz processed_file_md5 b13b618b29d8af1101667ac40de1e0e2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF949MYK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF949MYK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF949MYK/@@download/ENCFF949MYK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF949MYK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e9595f32d82390dd9092b02ff868e38b data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPA;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=FactorBook:ENCSR269TNX,GEO:GSE96015;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-10-31,2016-10-11;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq GABPA IDR thresholded peaks (narrowPeak) [Experiment: ENCSR269TNX] [Life stage: Child] [TF ChIP-seq peaks]
GABPA • GM12878 NGENCYJM7QU627 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCYJM7QU627 data_source ENCODE Download track Download number_of_intervals 7,321 bp_covered 1,999,648 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR331HPA biological_replicate 1 technical_replicate 1_1 antibody GABPA assay TF ChIP-seq file_format bed narrowPeak file_size 136,044 downloaded_date 06/12/2022 release_date 12/30/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF796KXC.bed.gz processed_file_md5 bf1202ada1dbc380e6b7b5cb84accb9f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF796KXC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF796KXC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF796KXC/@@download/ENCFF796KXC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF796KXC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9e27435dc58c161583112e4713024d9d data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR331HPA,GEO:GSE96120;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2014-06-30,2012-09-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1) TF ChIP-seq GABPA IDR thresholded peaks (narrowPeak) [Experiment: ENCSR331HPA] [Life stage: Adult] [TF ChIP-seq peaks]
GABPA • A549 NGENCZ75MRKGOL • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENCZ75MRKGOL data_source ENCODE Download track Download number_of_intervals 17,261 bp_covered 8,852,180 output_type IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BPY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay TF ChIP-seq file_format bed narrowPeak file_size 315,279 downloaded_date 09/10/2024 release_date 12/11/2020 date_added_to_filer 10/01/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF045XZV.bed.gz processed_file_md5 b50242d7f9441cf3453352170ba9d276 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF045XZV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF045XZV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF045XZV/@@download/ENCFF045XZV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF045XZV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 58ac6c345714959cf3df28b32a6763cd data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 58 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000BPY,GEO:GSM1010833,UCSC-ENCODE-hg19:wgEncodeEH002294;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-02-29;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 2) TF ChIP-seq GABPA IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BPY] [Life stage: Adult] [TF ChIP-seq peaks]
GABPA • HepG2 NGFTB2QW7THEI4 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB2QW7THEI4 data_source Factorbook Download track Download number_of_intervals 2,560 bp_covered 48,640 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BJK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 49,291 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF890WJZ_CTKCTGGGARWYGTAGTYC_sorted.bed.gz processed_file_md5 66141f9820b6d233d227c73502e65aa6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF890WJZ_CTKCTGGGARWYGTAGTYC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF890WJZ_CTKCTGGGARWYGTAGTYC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF890WJZ_CTKCTGGGARWYGTAGTYC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF890WJZ_CTKCTGGGARWYGTAGTYC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 9a1350a00fd43278ec1c2aa84f5713ae data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF890WJZ;ENCODE_bigBed_id=ENCFF467OEO;PMID=34755879;Motif_sequence=CTKCTGGGARWYGTAGTYC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BJK] [Life stage: Child] [TFBS]
GABPA • H1-hESC NGFTB47O5NWFMF • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTB47O5NWFMF data_source Factorbook Download track Download number_of_intervals 6,347 bp_covered 95,205 output_type transcription factor binding sites all genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BIW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 112,376 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF308NZT_SSVRCCGGAAGTGVS_sorted.bed.gz processed_file_md5 3979afff0edce40cfd72079ca35ddb6a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF308NZT_SSVRCCGGAAGTGVS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF308NZT_SSVRCCGGAAGTGVS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF308NZT_SSVRCCGGAAGTGVS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF308NZT_SSVRCCGGAAGTGVS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d106918c3121a8dfe9bd019be87b0578 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Richard Myers, HAIB;System=NR;ENCODE_BED_id=ENCFF308NZT;ENCODE_bigBed_id=ENCFF739QFD;PMID=34755879;Motif_sequence=SSVRCCGGAAGTGVS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BIW] [TFBS]
GABPA • HL-60 NGFTB4H4IVZSM6 • Factorbook34755879 Motif finding HL-60 TFBS Show metadata Download track Track metadata identifier NGFTB4H4IVZSM6 data_source Factorbook Download track Download number_of_intervals 14,980 bp_covered 183,834 output_type transcription factor binding sites all genome_build hg38 cell_type HL-60 biosample_type Cell line biosample_term_id EFO:0002793 tissue_category Blood encode_experiment_id ENCSR000BTK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 208,155 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF689GEM_CCGGAAGY_sorted.bed.gz processed_file_md5 e75464692f019d2f01d3a877e6aa2061 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF689GEM_CCGGAAGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF689GEM_CCGGAAGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF689GEM_CCGGAAGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF689GEM_CCGGAAGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a2c6f7b9e6a0243cc5ae7c8fdd62d58c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HL-60;Original_cell_type=HL-60;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF689GEM;ENCODE_bigBed_id=ENCFF515BEZ;PMID=34755879;Motif_sequence=CCGGAAGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002793;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook HL-60 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BTK] [Life stage: Adult] [TFBS]
GABPA • HeLa-S3 NGFTB4NMGF5COL • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTB4NMGF5COL data_source Factorbook Download track Download number_of_intervals 2,280 bp_covered 47,880 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000BHS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 46,872 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF168BDU_GSMTKCTGGGARWTGTAGTYY_sorted.bed.gz processed_file_md5 7ecd4d9eace7886dc72f9a242f740a01 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF168BDU_GSMTKCTGGGARWTGTAGTYY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF168BDU_GSMTKCTGGGARWTGTAGTYY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF168BDU_GSMTKCTGGGARWTGTAGTYY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF168BDU_GSMTKCTGGGARWTGTAGTYY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 eebce73f70abded9fc847b1edbaa6882 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Richard Myers, HAIB;System=reproductive system;ENCODE_BED_id=ENCFF168BDU;ENCODE_bigBed_id=ENCFF211VKG;PMID=34755879;Motif_sequence=GSMTKCTGGGARWTGTAGTYY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BHS] [Life stage: Adult] [TFBS]
GABPA • HeLa-S3 NGFTB4ZYONYNKM • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTB4ZYONYNKM data_source Factorbook Download track Download number_of_intervals 4,888 bp_covered 39,104 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000BHS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 50,886 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF168BDU_RCTTCCGG_sorted.bed.gz processed_file_md5 ffa2cdcf3c28db985f28f30e6e58e94f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF168BDU_RCTTCCGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF168BDU_RCTTCCGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF168BDU_RCTTCCGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF168BDU_RCTTCCGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 80ad41e41a6949725a674e72ce3961f9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Richard Myers, HAIB;System=reproductive system;ENCODE_BED_id=ENCFF168BDU;ENCODE_bigBed_id=ENCFF211VKG;PMID=34755879;Motif_sequence=RCTTCCGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BHS] [Life stage: Adult] [TFBS]
GABPA • A549 NGFTB6VT3XMS67 • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTB6VT3XMS67 data_source Factorbook Download track Download number_of_intervals 7,156 bp_covered 157,432 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BPY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 127,563 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF343BIK_GRACTACAHTTCCCAGMAKGCC_sorted.bed.gz processed_file_md5 e3e09fcc465f6c84621582f3e2cd1f78 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF343BIK_GRACTACAHTTCCCAGMAKGCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF343BIK_GRACTACAHTTCCCAGMAKGCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF343BIK_GRACTACAHTTCCCAGMAKGCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF343BIK_GRACTACAHTTCCCAGMAKGCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b702057fefdc8e465b34d8df555f5b53 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF343BIK;ENCODE_bigBed_id=ENCFF045XZV;PMID=34755879;Motif_sequence=GRACTACAHTTCCCAGMAKGCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BPY] [Life stage: Adult] [TFBS]