GABPA • K562 NGFTB7JAV7HBLY • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB7JAV7HBLY data_source Factorbook Download track Download number_of_intervals 4,854 bp_covered 67,956 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000BLO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 76,544 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF489EME_GGARGGGAAAGAAA_sorted.bed.gz processed_file_md5 dce55bca862a4b2cea9dc4469756b5fa wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF489EME_GGARGGGAAAGAAA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF489EME_GGARGGGAAAGAAA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF489EME_GGARGGGAAAGAAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF489EME_GGARGGGAAAGAAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c67d2c4ff0f1f377bc927f8ad979148d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF489EME;ENCODE_bigBed_id=ENCFF996TSW;PMID=34755879;Motif_sequence=GGARGGGAAAGAAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BLO] [Life stage: Adult] [TFBS]
GABPA • Liver NGFTB7ZRRFLAYQ • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTB7ZRRFLAYQ data_source Factorbook Download track Download number_of_intervals 5,196 bp_covered 41,568 output_type transcription factor binding sites all genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR350ORK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 51,140 downloaded_date 07/10/2024 release_date 09/09/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF299PIX_RCTTCCGG_sorted.bed.gz processed_file_md5 f3edd09ca63836ac50e9b7d6a093cbf3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF299PIX_RCTTCCGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF299PIX_RCTTCCGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF299PIX_RCTTCCGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF299PIX_RCTTCCGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6fabb1c16c74a995dc74f80af4b64e10 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens liver tissue female child (4 years);Original_cell_type=liver;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF299PIX;ENCODE_bigBed_id=ENCFF377OKX;PMID=34755879;Motif_sequence=RCTTCCGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook Liver (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR350ORK] [Life stage: Child] [TFBS]
GABPA • SK-N-SH NGFTBAVBAYDBHT • Factorbook34755879 Motif finding SK-N-SH TFBS Show metadata Download track Track metadata identifier NGFTBAVBAYDBHT data_source Factorbook Download track Download number_of_intervals 6,844 bp_covered 54,752 output_type transcription factor binding sites all genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR000BTG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 70,091 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF157KZY_RCTTCCGG_sorted.bed.gz processed_file_md5 bcb4d3bd7882b258c482c2e72e1f61e7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF157KZY_RCTTCCGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF157KZY_RCTTCCGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF157KZY_RCTTCCGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF157KZY_RCTTCCGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2c9929dc75a57122dba00dce1c6961bd data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens SK-N-SH;Original_cell_type=SK-N-SH;Lab=Richard Myers, HAIB;System=central nervous system;ENCODE_BED_id=ENCFF157KZY;ENCODE_bigBed_id=ENCFF755TJJ;PMID=34755879;Motif_sequence=RCTTCCGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name Factorbook SK-N-SH (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BTG] [Life stage: Child] [TFBS]
GABPA • MCF-7 NGFTBBPEPPRL4B • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBBPEPPRL4B data_source Factorbook Download track Download number_of_intervals 14,645 bp_covered 219,675 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000BUK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 214,329 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF678DJM_GGVRCCGGAAGTGVN_sorted.bed.gz processed_file_md5 4e1169902f62bb140dddd6bad66a1937 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF678DJM_GGVRCCGGAAGTGVN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF678DJM_GGVRCCGGAAGTGVN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF678DJM_GGVRCCGGAAGTGVN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF678DJM_GGVRCCGGAAGTGVN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8d37138c7780dc67dead521f1c5a2814 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Richard Myers, HAIB;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF678DJM;ENCODE_bigBed_id=ENCFF735CHO;PMID=34755879;Motif_sequence=GGVRCCGGAAGTGVN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BUK] [Life stage: Adult] [TFBS]
GABPA • GM12878 NGFTBCOQMKILUI • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBCOQMKILUI data_source Factorbook Download track Download number_of_intervals 3,282 bp_covered 68,922 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR331HPA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 63,625 downloaded_date 07/10/2024 release_date 06/30/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF093KLR_RRACTACAWTTCCCAGAAKGC_sorted.bed.gz processed_file_md5 df6e591e8e400c8206f782e97d4b89a8 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF093KLR_RRACTACAWTTCCCAGAAKGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF093KLR_RRACTACAWTTCCCAGAAKGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF093KLR_RRACTACAWTTCCCAGAAKGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF093KLR_RRACTACAWTTCCCAGAAKGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c3f65c6e96674bc47c19013c1f99dbd0 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF093KLR;ENCODE_bigBed_id=ENCFF872TWR;PMID=34755879;Motif_sequence=RRACTACAWTTCCCAGAAKGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR331HPA] [TFBS]
GABPA • K562 NGFTBCQHHVWBMO • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBCQHHVWBMO data_source Factorbook Download track Download number_of_intervals 27,040 bp_covered 405,600 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000BLO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 437,522 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF489EME_VVGGGGCGGGGCHKV_sorted.bed.gz processed_file_md5 d6e8ea5a07e4603e27432253c8f0ffd2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF489EME_VVGGGGCGGGGCHKV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF489EME_VVGGGGCGGGGCHKV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF489EME_VVGGGGCGGGGCHKV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF489EME_VVGGGGCGGGGCHKV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 708b42657fe23f4831bfe5831c70462f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF489EME;ENCODE_bigBed_id=ENCFF996TSW;PMID=34755879;Motif_sequence=VVGGGGCGGGGCHKV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BLO] [Life stage: Adult] [TFBS]
GABPA • Liver NGFTBCZHVKNNXP • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTBCZHVKNNXP data_source Factorbook Download track Download number_of_intervals 6,557 bp_covered 137,697 output_type transcription factor binding sites all genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR038GMB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 116,801 downloaded_date 07/10/2024 release_date 06/30/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF355DNH_GSMTTCTGGGARNTGTAGTYC_sorted.bed.gz processed_file_md5 5563543ef0f613f4b606c782d8eb4aee wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF355DNH_GSMTTCTGGGARNTGTAGTYC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF355DNH_GSMTTCTGGGARNTGTAGTYC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF355DNH_GSMTTCTGGGARNTGTAGTYC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF355DNH_GSMTTCTGGGARNTGTAGTYC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d5d377990960f343722e1cc3d3f70510 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens with nonobstructive coronary artery disease| liver tissue male adult (32 years);Original_cell_type=liver;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF355DNH;ENCODE_bigBed_id=ENCFF500III;PMID=34755879;Motif_sequence=GSMTTCTGGGARNTGTAGTYC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Liver (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR038GMB] [Life stage: Adult] [TFBS]
GABPA • Liver NGFTBDB73OUECI • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTBDB73OUECI data_source Factorbook Download track Download number_of_intervals 6,989 bp_covered 104,835 output_type transcription factor binding sites all genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR350ORK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 89,521 downloaded_date 07/10/2024 release_date 09/09/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF299PIX_TTTYTYTBYCTYYYY_sorted.bed.gz processed_file_md5 b70b6a94a462e5b73c663614d8535280 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF299PIX_TTTYTYTBYCTYYYY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF299PIX_TTTYTYTBYCTYYYY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF299PIX_TTTYTYTBYCTYYYY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF299PIX_TTTYTYTBYCTYYYY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d673764c6959f3e1df1e942b4d2e2276 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens liver tissue female child (4 years);Original_cell_type=liver;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF299PIX;ENCODE_bigBed_id=ENCFF377OKX;PMID=34755879;Motif_sequence=TTTYTYTBYCTYYYY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook Liver (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR350ORK] [Life stage: Child] [TFBS]
GABPA • GM12878 NGFTBDC7UNKJXU • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBDC7UNKJXU data_source Factorbook Download track Download number_of_intervals 375 bp_covered 7,875 output_type transcription factor binding sites significant genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR331HPA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 6,261 downloaded_date 07/10/2024 release_date 06/30/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF093KLR_RRACTACAWTTCCCAGAAKGC_filtered.bed.gz processed_file_md5 644f3a7a8aec9da820bea2ab991a2d62 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF093KLR_RRACTACAWTTCCCAGAAKGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF093KLR_RRACTACAWTTCCCAGAAKGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF093KLR_RRACTACAWTTCCCAGAAKGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF093KLR_RRACTACAWTTCCCAGAAKGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c3f65c6e96674bc47c19013c1f99dbd0 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF093KLR;ENCODE_bigBed_id=ENCFF872TWR;PMID=34755879;Motif_sequence=RRACTACAWTTCCCAGAAKGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding GABPA transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR331HPA] [TFBS]
GABPA • HepG2 NGFTBDVA6GN43F • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBDVA6GN43F data_source Factorbook Download track Download number_of_intervals 9,755 bp_covered 78,040 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR269TNX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 101,194 downloaded_date 07/10/2024 release_date 10/31/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF652FKO_RYTTCCGG_sorted.bed.gz processed_file_md5 5e5d2feb1a62ef4d6659601a141e53e4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF652FKO_RYTTCCGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF652FKO_RYTTCCGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF652FKO_RYTTCCGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF652FKO_RYTTCCGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ba7b2364a2c3e87281debc5eda75ba54 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPA;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF652FKO;ENCODE_bigBed_id=ENCFF180FFY;PMID=34755879;Motif_sequence=RYTTCCGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR269TNX] [Life stage: Child] [TFBS]
GABPA • K562 NGFTBDWZXXKXWP • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBDWZXXKXWP data_source Factorbook Download track Download number_of_intervals 9,883 bp_covered 108,713 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000BLO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 141,708 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF489EME_VRCCGGAAGTG_sorted.bed.gz processed_file_md5 e2ae62df3604b88c78c362556df03ea5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF489EME_VRCCGGAAGTG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF489EME_VRCCGGAAGTG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF489EME_VRCCGGAAGTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF489EME_VRCCGGAAGTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e2cb0dd230041cb123ac0a254c307d0c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF489EME;ENCODE_bigBed_id=ENCFF996TSW;PMID=34755879;Motif_sequence=VRCCGGAAGTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BLO] [Life stage: Adult] [TFBS]
GABPA • MCF-7 NGFTBF3LVRT5N7 • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBF3LVRT5N7 data_source Factorbook Download track Download number_of_intervals 8,596 bp_covered 68,768 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000BUK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 75,962 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF678DJM_CCGGAAGY_sorted.bed.gz processed_file_md5 8e3121cefe47f86c4cef8725bdbea163 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF678DJM_CCGGAAGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF678DJM_CCGGAAGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF678DJM_CCGGAAGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF678DJM_CCGGAAGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bedf9d84d7403927093da41a40339705 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Richard Myers, HAIB;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF678DJM;ENCODE_bigBed_id=ENCFF735CHO;PMID=34755879;Motif_sequence=CCGGAAGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BUK] [Life stage: Adult] [TFBS]
GABPA • SK-N-SH NGFTBF3Q7ZL7UW • Factorbook34755879 Motif finding SK-N-SH TFBS Show metadata Download track Track metadata identifier NGFTBF3Q7ZL7UW data_source Factorbook Download track Download number_of_intervals 10,463 bp_covered 156,945 output_type transcription factor binding sites all genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR000BTG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 174,924 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF157KZY_GVVCCGGAAGYGVNN_sorted.bed.gz processed_file_md5 312cc304c92cf724e84284d467d71467 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF157KZY_GVVCCGGAAGYGVNN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF157KZY_GVVCCGGAAGYGVNN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF157KZY_GVVCCGGAAGYGVNN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF157KZY_GVVCCGGAAGYGVNN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 5c3016728a65eb4474b42d392000198c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens SK-N-SH;Original_cell_type=SK-N-SH;Lab=Richard Myers, HAIB;System=central nervous system;ENCODE_BED_id=ENCFF157KZY;ENCODE_bigBed_id=ENCFF755TJJ;PMID=34755879;Motif_sequence=GVVCCGGAAGYGVNN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name Factorbook SK-N-SH (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BTG] [Life stage: Child] [TFBS]
GABPA • HepG2 NGFTBFJYBD3GSZ • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBFJYBD3GSZ data_source Factorbook Download track Download number_of_intervals 16,463 bp_covered 246,945 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR269TNX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 255,574 downloaded_date 07/10/2024 release_date 10/31/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF652FKO_VVNKBCACTTCCGGY_sorted.bed.gz processed_file_md5 892d30a668636bb74c623445827fc57e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF652FKO_VVNKBCACTTCCGGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF652FKO_VVNKBCACTTCCGGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF652FKO_VVNKBCACTTCCGGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF652FKO_VVNKBCACTTCCGGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ef5b97987033134afa2565bb07a63213 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPA;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF652FKO;ENCODE_bigBed_id=ENCFF180FFY;PMID=34755879;Motif_sequence=VVNKBCACTTCCGGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR269TNX] [Life stage: Child] [TFBS]
GABPA • HL-60 NGFTBFSEOEETHH • Factorbook34755879 Motif finding HL-60 TFBS Show metadata Download track Track metadata identifier NGFTBFSEOEETHH data_source Factorbook Download track Download number_of_intervals 203 bp_covered 4,060 output_type transcription factor binding sites significant genome_build hg38 cell_type HL-60 biosample_type Cell line biosample_term_id EFO:0002793 tissue_category Blood encode_experiment_id ENCSR000BTK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,622 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF689GEM_RACTACAWYTCCCAGAAKGC_filtered.bed.gz processed_file_md5 87dc31fcae8c6c2d8ad5614d58c807b6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF689GEM_RACTACAWYTCCCAGAAKGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF689GEM_RACTACAWYTCCCAGAAKGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF689GEM_RACTACAWYTCCCAGAAKGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF689GEM_RACTACAWYTCCCAGAAKGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 115d2ea328952543c1d3808481ecba91 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HL-60;Original_cell_type=HL-60;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF689GEM;ENCODE_bigBed_id=ENCFF515BEZ;PMID=34755879;Motif_sequence=RACTACAWYTCCCAGAAKGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002793;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook HL-60 (repl. 1, 2) Motif finding GABPA transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BTK] [Life stage: Adult] [TFBS]
GABPA • HeLa-S3 NGFTBGEUNZ7SN6 • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTBGEUNZ7SN6 data_source Factorbook Download track Download number_of_intervals 2,827 bp_covered 42,405 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000BHS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 48,046 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF168BDU_GGAAGGRAAAGRRRV_sorted.bed.gz processed_file_md5 f8170c8a5d1b80dc24a941ee8a273a43 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF168BDU_GGAAGGRAAAGRRRV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF168BDU_GGAAGGRAAAGRRRV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF168BDU_GGAAGGRAAAGRRRV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF168BDU_GGAAGGRAAAGRRRV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2d834e3f3358e3b1c17b44e0200a0397 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Richard Myers, HAIB;System=reproductive system;ENCODE_BED_id=ENCFF168BDU;ENCODE_bigBed_id=ENCFF211VKG;PMID=34755879;Motif_sequence=GGAAGGRAAAGRRRV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BHS] [Life stage: Adult] [TFBS]
GABPA • HepG2 NGFTBGITXY6TIL • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBGITXY6TIL data_source Factorbook Download track Download number_of_intervals 8,330 bp_covered 108,290 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BJK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 130,727 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF890WJZ_SVRCCGGAAGTGS_sorted.bed.gz processed_file_md5 f832d12171d228cc1f371b79d1e40692 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF890WJZ_SVRCCGGAAGTGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF890WJZ_SVRCCGGAAGTGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF890WJZ_SVRCCGGAAGTGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF890WJZ_SVRCCGGAAGTGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 21f7220fa48cafea4f68b5d3c8135e1c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF890WJZ;ENCODE_bigBed_id=ENCFF467OEO;PMID=34755879;Motif_sequence=SVRCCGGAAGTGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BJK] [Life stage: Child] [TFBS]
GABPA • H1-hESC NGFTBI7DRUIYA4 • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTBI7DRUIYA4 data_source Factorbook Download track Download number_of_intervals 69 bp_covered 1,449 output_type transcription factor binding sites significant genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BIW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,551 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF308NZT_RGCMYKCTGGGARWTGTAGTY_filtered.bed.gz processed_file_md5 109ddf4b1e30380f31a9b180a3007400 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF308NZT_RGCMYKCTGGGARWTGTAGTY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF308NZT_RGCMYKCTGGGARWTGTAGTY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF308NZT_RGCMYKCTGGGARWTGTAGTY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF308NZT_RGCMYKCTGGGARWTGTAGTY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 470797c117f1488efa3999bfece79687 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Richard Myers, HAIB;System=NR;ENCODE_BED_id=ENCFF308NZT;ENCODE_bigBed_id=ENCFF739QFD;PMID=34755879;Motif_sequence=RGCMYKCTGGGARWTGTAGTY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1, 2) Motif finding GABPA transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BIW] [TFBS]
GABPA • A549 NGFTBISPCWK35L • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBISPCWK35L data_source Factorbook Download track Download number_of_intervals 14,179 bp_covered 241,043 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BPY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 209,054 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF343BIK_VVNNSCRCTTCCGGBBS_sorted.bed.gz processed_file_md5 1b21c4203a50770fab12c4b362d59a0b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF343BIK_VVNNSCRCTTCCGGBBS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF343BIK_VVNNSCRCTTCCGGBBS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF343BIK_VVNNSCRCTTCCGGBBS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF343BIK_VVNNSCRCTTCCGGBBS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 fa64c4d13f4269b4ee9d16302000715a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF343BIK;ENCODE_bigBed_id=ENCFF045XZV;PMID=34755879;Motif_sequence=VVNNSCRCTTCCGGBBS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BPY] [Life stage: Adult] [TFBS]
GABPA • K562 NGFTBJNYKYBNBK • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBJNYKYBNBK data_source Factorbook Download track Download number_of_intervals 8,078 bp_covered 64,624 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000BLO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 81,282 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF489EME_CCGGAAGY_sorted.bed.gz processed_file_md5 7b991eac532cd8181cccaac3ef5a53e3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF489EME_CCGGAAGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF489EME_CCGGAAGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF489EME_CCGGAAGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF489EME_CCGGAAGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 46ddb903dd17a75dcf977941d1dcef1f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF489EME;ENCODE_bigBed_id=ENCFF996TSW;PMID=34755879;Motif_sequence=CCGGAAGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BLO] [Life stage: Adult] [TFBS]