GABPA • HepG2 NGFTBJXLKCHCHP • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBJXLKCHCHP data_source Factorbook Download track Download number_of_intervals 8,272 bp_covered 173,712 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR269TNX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 153,668 downloaded_date 07/10/2024 release_date 10/31/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF652FKO_GGCMTTCTGGGAAWTGTAGTY_sorted.bed.gz processed_file_md5 0e1f258cd646f02151061c78c0f42b7d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF652FKO_GGCMTTCTGGGAAWTGTAGTY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF652FKO_GGCMTTCTGGGAAWTGTAGTY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF652FKO_GGCMTTCTGGGAAWTGTAGTY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF652FKO_GGCMTTCTGGGAAWTGTAGTY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 05f690bb03e1d577eb1a5d0a75f4c47e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPA;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF652FKO;ENCODE_bigBed_id=ENCFF180FFY;PMID=34755879;Motif_sequence=GGCMTTCTGGGAAWTGTAGTY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR269TNX] [Life stage: Child] [TFBS]
GABPA • Liver NGFTBKHD66TDIP • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTBKHD66TDIP data_source Factorbook Download track Download number_of_intervals 282 bp_covered 5,922 output_type transcription factor binding sites significant genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR038GMB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,107 downloaded_date 07/10/2024 release_date 06/30/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF355DNH_GSMTTCTGGGARNTGTAGTYC_filtered.bed.gz processed_file_md5 76b59d28d7e08e229e1b97f277cc1a71 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF355DNH_GSMTTCTGGGARNTGTAGTYC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF355DNH_GSMTTCTGGGARNTGTAGTYC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF355DNH_GSMTTCTGGGARNTGTAGTYC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF355DNH_GSMTTCTGGGARNTGTAGTYC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d5d377990960f343722e1cc3d3f70510 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens with nonobstructive coronary artery disease| liver tissue male adult (32 years);Original_cell_type=liver;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF355DNH;ENCODE_bigBed_id=ENCFF500III;PMID=34755879;Motif_sequence=GSMTTCTGGGARNTGTAGTYC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Liver (repl. 1, 2) Motif finding GABPA transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR038GMB] [Life stage: Adult] [TFBS]
GABPA • HL-60 NGFTBKK3DRUQH4 • Factorbook34755879 Motif finding HL-60 TFBS Show metadata Download track Track metadata identifier NGFTBKK3DRUQH4 data_source Factorbook Download track Download number_of_intervals 2,172 bp_covered 43,440 output_type transcription factor binding sites all genome_build hg38 cell_type HL-60 biosample_type Cell line biosample_term_id EFO:0002793 tissue_category Blood encode_experiment_id ENCSR000BTK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 42,550 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF689GEM_RACTACAWYTCCCAGAAKGC_sorted.bed.gz processed_file_md5 8af8752b2f63e96ecd5da298717f9a84 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF689GEM_RACTACAWYTCCCAGAAKGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF689GEM_RACTACAWYTCCCAGAAKGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF689GEM_RACTACAWYTCCCAGAAKGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF689GEM_RACTACAWYTCCCAGAAKGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 115d2ea328952543c1d3808481ecba91 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HL-60;Original_cell_type=HL-60;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF689GEM;ENCODE_bigBed_id=ENCFF515BEZ;PMID=34755879;Motif_sequence=RACTACAWYTCCCAGAAKGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002793;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook HL-60 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BTK] [Life stage: Adult] [TFBS]
GABPA • GM12878 NGFTBL4UUL6EUF • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBL4UUL6EUF data_source Factorbook Download track Download number_of_intervals 9,351 bp_covered 130,914 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR331HPA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 146,676 downloaded_date 07/10/2024 release_date 06/30/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF093KLR_BCACTTCCGGBBSS_sorted.bed.gz processed_file_md5 2ed722424af1d4570b01e1d526a52109 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF093KLR_BCACTTCCGGBBSS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF093KLR_BCACTTCCGGBBSS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF093KLR_BCACTTCCGGBBSS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF093KLR_BCACTTCCGGBBSS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 eb8058fea90c04b862e1539665bf9500 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF093KLR;ENCODE_bigBed_id=ENCFF872TWR;PMID=34755879;Motif_sequence=BCACTTCCGGBBSS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR331HPA] [TFBS]
GABPA • MCF-7 NGFTBL6K4ELFRO • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBL6K4ELFRO data_source Factorbook Download track Download number_of_intervals 4,734 bp_covered 37,872 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR038RXU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 40,152 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF158YBV_CCGGAAGY_sorted.bed.gz processed_file_md5 3fa4b20a8d116eaa22c3bbdf16713868 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF158YBV_CCGGAAGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF158YBV_CCGGAAGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF158YBV_CCGGAAGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF158YBV_CCGGAAGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 708bebe18d92af868ed9199326824b2c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7 stably expressing GABPA;Original_cell_type=MCF-7;Lab=Kevin White, UChicago;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF158YBV;ENCODE_bigBed_id=ENCFF951HFC;PMID=34755879;Motif_sequence=CCGGAAGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR038RXU] [Life stage: Adult] [TFBS]
GABPA • K562 NGFTBM25C4QMMA • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBM25C4QMMA data_source Factorbook Download track Download number_of_intervals 8,208 bp_covered 139,536 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR290MUH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 108,721 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF173GUD_ACTACAWBTCCCAGMAT_sorted.bed.gz processed_file_md5 e08756a62920b4a10028f092c3d38ba6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF173GUD_ACTACAWBTCCCAGMAT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF173GUD_ACTACAWBTCCCAGMAT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF173GUD_ACTACAWBTCCCAGMAT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF173GUD_ACTACAWBTCCCAGMAT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 39b063bfd5f2c82e6450d2bf248fc25b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing GABPA;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF173GUD;ENCODE_bigBed_id=ENCFF330AJD;PMID=34755879;Motif_sequence=ACTACAWBTCCCAGMAT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR290MUH] [Life stage: Adult] [TFBS]
GABPA • H1-hESC NGFTBMGMURFNYB • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTBMGMURFNYB data_source Factorbook Download track Download number_of_intervals 4,272 bp_covered 34,176 output_type transcription factor binding sites all genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BIW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 44,250 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF308NZT_CCGGAAGY_sorted.bed.gz processed_file_md5 4f0860985c995e3758b35b9a72b07771 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF308NZT_CCGGAAGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF308NZT_CCGGAAGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF308NZT_CCGGAAGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF308NZT_CCGGAAGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 67f442381976d0201cc3d571de8ccc23 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Richard Myers, HAIB;System=NR;ENCODE_BED_id=ENCFF308NZT;ENCODE_bigBed_id=ENCFF739QFD;PMID=34755879;Motif_sequence=CCGGAAGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BIW] [TFBS]
GABPA • Liver NGFTBMQMOKBBGF • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTBMQMOKBBGF data_source Factorbook Download track Download number_of_intervals 7,242 bp_covered 108,630 output_type transcription factor binding sites all genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR350ORK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 115,990 downloaded_date 07/10/2024 release_date 09/09/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF299PIX_SSVRCCGGAAGTGVS_sorted.bed.gz processed_file_md5 df2f44c45e43813419cac6a9246f8aa4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF299PIX_SSVRCCGGAAGTGVS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF299PIX_SSVRCCGGAAGTGVS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF299PIX_SSVRCCGGAAGTGVS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF299PIX_SSVRCCGGAAGTGVS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f88ebd44a088e2b4e8a00bb405f2f723 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens liver tissue female child (4 years);Original_cell_type=liver;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF299PIX;ENCODE_bigBed_id=ENCFF377OKX;PMID=34755879;Motif_sequence=SSVRCCGGAAGTGVS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook Liver (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR350ORK] [Life stage: Child] [TFBS]
GABPA • A549 NGFTBMRWM4H5DP • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBMRWM4H5DP data_source Factorbook Download track Download number_of_intervals 3,728 bp_covered 41,008 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BPY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 46,992 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF343BIK_GCCGCCATSTT_sorted.bed.gz processed_file_md5 a51833be0ef4cda6db9c48717992ee43 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF343BIK_GCCGCCATSTT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF343BIK_GCCGCCATSTT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF343BIK_GCCGCCATSTT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF343BIK_GCCGCCATSTT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 42f01485c573eb5c66c000e8c29f7a37 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF343BIK;ENCODE_bigBed_id=ENCFF045XZV;PMID=34755879;Motif_sequence=GCCGCCATSTT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BPY] [Life stage: Adult] [TFBS]
GABPA • GM12878 NGFTBN2BR7NAXJ • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBN2BR7NAXJ data_source Factorbook Download track Download number_of_intervals 5,700 bp_covered 45,600 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR331HPA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 56,505 downloaded_date 07/10/2024 release_date 06/30/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF093KLR_CCGGAAGY_sorted.bed.gz processed_file_md5 d8c3ebf2e3e4117f6f05a0f874069070 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF093KLR_CCGGAAGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF093KLR_CCGGAAGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF093KLR_CCGGAAGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF093KLR_CCGGAAGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2ba42cec7add34fcbc1804da31cd873e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF093KLR;ENCODE_bigBed_id=ENCFF872TWR;PMID=34755879;Motif_sequence=CCGGAAGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR331HPA] [TFBS]
GABPA • MCF-7 NGFTBNASVC2FFA • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBNASVC2FFA data_source Factorbook Download track Download number_of_intervals 1,370 bp_covered 28,770 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR038RXU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 25,085 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF158YBV_GCMYKCTGGGARWTGTAGTYC_sorted.bed.gz processed_file_md5 feb0b43ebc2fc2c88c7fb73631dfe36f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF158YBV_GCMYKCTGGGARWTGTAGTYC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF158YBV_GCMYKCTGGGARWTGTAGTYC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF158YBV_GCMYKCTGGGARWTGTAGTYC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF158YBV_GCMYKCTGGGARWTGTAGTYC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 641e4b03a56e76c6f924df46a964ce1e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7 stably expressing GABPA;Original_cell_type=MCF-7;Lab=Kevin White, UChicago;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF158YBV;ENCODE_bigBed_id=ENCFF951HFC;PMID=34755879;Motif_sequence=GCMYKCTGGGARWTGTAGTYC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR038RXU] [Life stage: Adult] [TFBS]
GABPA • A549 NGFTBNSB645JKM • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBNSB645JKM data_source Factorbook Download track Download number_of_intervals 8,769 bp_covered 70,152 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BPY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 74,003 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF343BIK_CCGGAAGY_sorted.bed.gz processed_file_md5 a1bb1452c8b74f2306a1c4639e37f7fc wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF343BIK_CCGGAAGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF343BIK_CCGGAAGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF343BIK_CCGGAAGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF343BIK_CCGGAAGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 26c569499a3ae888d89c1b2ac547857e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF343BIK;ENCODE_bigBed_id=ENCFF045XZV;PMID=34755879;Motif_sequence=CCGGAAGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BPY] [Life stage: Adult] [TFBS]
GABPA • HL-60 NGFTBPBRXN4DOX • Factorbook34755879 Motif finding HL-60 TFBS Show metadata Download track Track metadata identifier NGFTBPBRXN4DOX data_source Factorbook Download track Download number_of_intervals 9,142 bp_covered 137,130 output_type transcription factor binding sites all genome_build hg38 cell_type HL-60 biosample_type Cell line biosample_term_id EFO:0002793 tissue_category Blood encode_experiment_id ENCSR000BTK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 158,675 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF689GEM_SVVCCGGAAGYGSNN_sorted.bed.gz processed_file_md5 fdd97d7a31b55d4524ea4af9748fd1d6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF689GEM_SVVCCGGAAGYGSNN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF689GEM_SVVCCGGAAGYGSNN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF689GEM_SVVCCGGAAGYGSNN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF689GEM_SVVCCGGAAGYGSNN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ee6c052e1f392a2d88ed5035a4d037cc data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HL-60;Original_cell_type=HL-60;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF689GEM;ENCODE_bigBed_id=ENCFF515BEZ;PMID=34755879;Motif_sequence=SVVCCGGAAGYGSNN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002793;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook HL-60 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BTK] [Life stage: Adult] [TFBS]
GABPA • HeLa-S3 NGFTBPFTHVAR7Z • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTBPFTHVAR7Z data_source Factorbook Download track Download number_of_intervals 6,963 bp_covered 97,482 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000BHS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 119,071 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF168BDU_NSCACTTCCGGBBS_sorted.bed.gz processed_file_md5 6ddb99c6861346e6b4316da68a1dfc66 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF168BDU_NSCACTTCCGGBBS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF168BDU_NSCACTTCCGGBBS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF168BDU_NSCACTTCCGGBBS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF168BDU_NSCACTTCCGGBBS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 27db53cf74ce75e2cfc40f648c53ae20 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Richard Myers, HAIB;System=reproductive system;ENCODE_BED_id=ENCFF168BDU;ENCODE_bigBed_id=ENCFF211VKG;PMID=34755879;Motif_sequence=NSCACTTCCGGBBS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BHS] [Life stage: Adult] [TFBS]
GABPA • SK-N-SH NGFTBPPNNDRO2D • Factorbook34755879 Motif finding SK-N-SH TFBS Show metadata Download track Track metadata identifier NGFTBPPNNDRO2D data_source Factorbook Download track Download number_of_intervals 3,608 bp_covered 64,944 output_type transcription factor binding sites all genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR000BTG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 64,449 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF157KZY_GRACTACAHTTCCCAGMA_sorted.bed.gz processed_file_md5 2c30afdfb37f60c370df59a1c7ff1f7c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF157KZY_GRACTACAHTTCCCAGMA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF157KZY_GRACTACAHTTCCCAGMA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF157KZY_GRACTACAHTTCCCAGMA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF157KZY_GRACTACAHTTCCCAGMA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a2a564183f85efe28d7bf881ed3b7993 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens SK-N-SH;Original_cell_type=SK-N-SH;Lab=Richard Myers, HAIB;System=central nervous system;ENCODE_BED_id=ENCFF157KZY;ENCODE_bigBed_id=ENCFF755TJJ;PMID=34755879;Motif_sequence=GRACTACAHTTCCCAGMA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name Factorbook SK-N-SH (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BTG] [Life stage: Child] [TFBS]
GABPA • HeLa-S3 NGFTBPQWL6N42K • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTBPQWL6N42K data_source Factorbook Download track Download number_of_intervals 256 bp_covered 5,376 output_type transcription factor binding sites significant genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000BHS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,633 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF168BDU_GSMTKCTGGGARWTGTAGTYY_filtered.bed.gz processed_file_md5 e9d549422bf450d39869b9089c93143d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF168BDU_GSMTKCTGGGARWTGTAGTYY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF168BDU_GSMTKCTGGGARWTGTAGTYY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF168BDU_GSMTKCTGGGARWTGTAGTYY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF168BDU_GSMTKCTGGGARWTGTAGTYY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 eebce73f70abded9fc847b1edbaa6882 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Richard Myers, HAIB;System=reproductive system;ENCODE_BED_id=ENCFF168BDU;ENCODE_bigBed_id=ENCFF211VKG;PMID=34755879;Motif_sequence=GSMTKCTGGGARWTGTAGTYY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding GABPA transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BHS] [Life stage: Adult] [TFBS]
GABPA • Liver NGFTBPRUGWKJNU • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTBPRUGWKJNU data_source Factorbook Download track Download number_of_intervals 12,682 bp_covered 139,502 output_type transcription factor binding sites all genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR038GMB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 154,035 downloaded_date 07/10/2024 release_date 06/30/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF355DNH_VCCGGAAGYVV_sorted.bed.gz processed_file_md5 d14f336de906ef5e993dfa179acd1e77 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF355DNH_VCCGGAAGYVV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF355DNH_VCCGGAAGYVV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF355DNH_VCCGGAAGYVV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF355DNH_VCCGGAAGYVV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2823fa1efe27f2c0670156770b9c5f00 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens with nonobstructive coronary artery disease| liver tissue male adult (32 years);Original_cell_type=liver;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF355DNH;ENCODE_bigBed_id=ENCFF500III;PMID=34755879;Motif_sequence=VCCGGAAGYVV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Liver (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR038GMB] [Life stage: Adult] [TFBS]
GABPA • Liver NGFTBQGJUPG2IY • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTBQGJUPG2IY data_source Factorbook Download track Download number_of_intervals 12,658 bp_covered 139,238 output_type transcription factor binding sites all genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR038GMB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 153,120 downloaded_date 07/10/2024 release_date 06/30/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF355DNH_BCACTTCCGGY_sorted.bed.gz processed_file_md5 70cb212a98f9928559c46590f277ab30 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF355DNH_BCACTTCCGGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF355DNH_BCACTTCCGGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF355DNH_BCACTTCCGGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF355DNH_BCACTTCCGGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a8144d4cd7cb316089092f53a9833a79 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens with nonobstructive coronary artery disease| liver tissue male adult (32 years);Original_cell_type=liver;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF355DNH;ENCODE_bigBed_id=ENCFF500III;PMID=34755879;Motif_sequence=BCACTTCCGGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Liver (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR038GMB] [Life stage: Adult] [TFBS]
GABPA • HepG2 NGFTBQRBFE6EWK • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBQRBFE6EWK data_source Factorbook Download track Download number_of_intervals 7,638 bp_covered 84,018 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BJK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 107,469 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF890WJZ_CRCTTCCGGYB_sorted.bed.gz processed_file_md5 dcfba8c5e2e62ac40b308ff460a52db9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF890WJZ_CRCTTCCGGYB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF890WJZ_CRCTTCCGGYB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF890WJZ_CRCTTCCGGYB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF890WJZ_CRCTTCCGGYB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 afd37657d6ae574e6d198ae437936561 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF890WJZ;ENCODE_bigBed_id=ENCFF467OEO;PMID=34755879;Motif_sequence=CRCTTCCGGYB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BJK] [Life stage: Child] [TFBS]
GABPA • HepG2 NGFTBRDW7SAWWE • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBRDW7SAWWE data_source Factorbook Download track Download number_of_intervals 1,515 bp_covered 22,725 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BJK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 26,422 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF890WJZ_TGTGACGTCACTTCC_sorted.bed.gz processed_file_md5 73f5a29cb1eb6c58c1f3aa4cc5e38551 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF890WJZ_TGTGACGTCACTTCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF890WJZ_TGTGACGTCACTTCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF890WJZ_TGTGACGTCACTTCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF890WJZ_TGTGACGTCACTTCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a7be5ca9b9b59e70abfa2ed1182ab338 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF890WJZ;ENCODE_bigBed_id=ENCFF467OEO;PMID=34755879;Motif_sequence=TGTGACGTCACTTCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BJK] [Life stage: Child] [TFBS]