GABPA • HepG2 NGFTBSDXJ6D4BP • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBSDXJ6D4BP data_source Factorbook Download track Download number_of_intervals 484 bp_covered 10,164 output_type transcription factor binding sites significant genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR269TNX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 7,645 downloaded_date 07/10/2024 release_date 10/31/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF652FKO_GGCMTTCTGGGAAWTGTAGTY_filtered.bed.gz processed_file_md5 f52afa6093afdddafa6b350f5ae83dec wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF652FKO_GGCMTTCTGGGAAWTGTAGTY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF652FKO_GGCMTTCTGGGAAWTGTAGTY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF652FKO_GGCMTTCTGGGAAWTGTAGTY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF652FKO_GGCMTTCTGGGAAWTGTAGTY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 05f690bb03e1d577eb1a5d0a75f4c47e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPA;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF652FKO;ENCODE_bigBed_id=ENCFF180FFY;PMID=34755879;Motif_sequence=GGCMTTCTGGGAAWTGTAGTY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GABPA transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR269TNX] [Life stage: Child] [TFBS]
GABPA • HepG2 NGFTBSEHCSOVM7 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBSEHCSOVM7 data_source Factorbook Download track Download number_of_intervals 13,928 bp_covered 208,920 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR269TNX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 207,766 downloaded_date 07/10/2024 release_date 10/31/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF652FKO_STYTCTTTYYYYTCC_sorted.bed.gz processed_file_md5 41912ea01cf8e1f9011f4f95cde37af1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF652FKO_STYTCTTTYYYYTCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF652FKO_STYTCTTTYYYYTCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF652FKO_STYTCTTTYYYYTCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF652FKO_STYTCTTTYYYYTCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d94ed15472755340d11663e46f2c154b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPA;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF652FKO;ENCODE_bigBed_id=ENCFF180FFY;PMID=34755879;Motif_sequence=STYTCTTTYYYYTCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR269TNX] [Life stage: Child] [TFBS]
GABPA • MCF-7 NGFTBT23P2B6ZW • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBT23P2B6ZW data_source Factorbook Download track Download number_of_intervals 15,895 bp_covered 333,795 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000BUK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 232,226 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF678DJM_YTTTTYYYTKCCTTYYYSYYT_sorted.bed.gz processed_file_md5 84a7a2f7f2e863e8b45d5a61df1c6b56 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF678DJM_YTTTTYYYTKCCTTYYYSYYT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF678DJM_YTTTTYYYTKCCTTYYYSYYT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF678DJM_YTTTTYYYTKCCTTYYYSYYT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF678DJM_YTTTTYYYTKCCTTYYYSYYT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 df3c9f5ae4eab4e233825db265467542 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Richard Myers, HAIB;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF678DJM;ENCODE_bigBed_id=ENCFF735CHO;PMID=34755879;Motif_sequence=YTTTTYYYTKCCTTYYYSYYT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BUK] [Life stage: Adult] [TFBS]
GABPA • K562 NGFTBTDZQ4FYF2 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBTDZQ4FYF2 data_source Factorbook Download track Download number_of_intervals 19,999 bp_covered 159,992 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR290MUH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 135,552 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF173GUD_RCTTCCGG_sorted.bed.gz processed_file_md5 78ca6b708435aed9be8080109e380c9b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF173GUD_RCTTCCGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF173GUD_RCTTCCGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF173GUD_RCTTCCGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF173GUD_RCTTCCGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e8c0aad369ba7ebc7872e07969f38caf data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing GABPA;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF173GUD;ENCODE_bigBed_id=ENCFF330AJD;PMID=34755879;Motif_sequence=RCTTCCGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR290MUH] [Life stage: Adult] [TFBS]
GABPA • SK-N-SH NGFTBUGUOQ67JG • Factorbook34755879 Motif finding SK-N-SH TFBS Show metadata Download track Track metadata identifier NGFTBUGUOQ67JG data_source Factorbook Download track Download number_of_intervals 237 bp_covered 4,266 output_type transcription factor binding sites significant genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR000BTG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,414 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF157KZY_GRACTACAHTTCCCAGMA_filtered.bed.gz processed_file_md5 415510d5f5d571a66155f4ab0d30c67b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF157KZY_GRACTACAHTTCCCAGMA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF157KZY_GRACTACAHTTCCCAGMA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF157KZY_GRACTACAHTTCCCAGMA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF157KZY_GRACTACAHTTCCCAGMA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a2a564183f85efe28d7bf881ed3b7993 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens SK-N-SH;Original_cell_type=SK-N-SH;Lab=Richard Myers, HAIB;System=central nervous system;ENCODE_BED_id=ENCFF157KZY;ENCODE_bigBed_id=ENCFF755TJJ;PMID=34755879;Motif_sequence=GRACTACAHTTCCCAGMA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name Factorbook SK-N-SH (repl. 1, 2) Motif finding GABPA transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BTG] [Life stage: Child] [TFBS]
GABPA • MCF-7 NGFTBUROSOWIEB • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBUROSOWIEB data_source Factorbook Download track Download number_of_intervals 5,318 bp_covered 58,498 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR038RXU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 64,271 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF158YBV_CCACTTCCGGB_sorted.bed.gz processed_file_md5 92c1f9eb81e8092afd062c8d8ac8a9c4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF158YBV_CCACTTCCGGB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF158YBV_CCACTTCCGGB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF158YBV_CCACTTCCGGB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF158YBV_CCACTTCCGGB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 cee19c6a6d519ed20f0efbc2b701da71 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7 stably expressing GABPA;Original_cell_type=MCF-7;Lab=Kevin White, UChicago;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF158YBV;ENCODE_bigBed_id=ENCFF951HFC;PMID=34755879;Motif_sequence=CCACTTCCGGB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR038RXU] [Life stage: Adult] [TFBS]
GABPA • H1-hESC NGFTBV3HUGF4JE • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTBV3HUGF4JE data_source Factorbook Download track Download number_of_intervals 1,800 bp_covered 37,800 output_type transcription factor binding sites all genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BIW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 36,683 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF308NZT_RGCMYKCTGGGARWTGTAGTY_sorted.bed.gz processed_file_md5 d46812403e11364e22f5a0b4b9e81ad3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF308NZT_RGCMYKCTGGGARWTGTAGTY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF308NZT_RGCMYKCTGGGARWTGTAGTY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF308NZT_RGCMYKCTGGGARWTGTAGTY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF308NZT_RGCMYKCTGGGARWTGTAGTY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 470797c117f1488efa3999bfece79687 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Richard Myers, HAIB;System=NR;ENCODE_BED_id=ENCFF308NZT;ENCODE_bigBed_id=ENCFF739QFD;PMID=34755879;Motif_sequence=RGCMYKCTGGGARWTGTAGTY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BIW] [TFBS]
GABPA • HepG2 NGFTBWBQDLUSXT • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBWBQDLUSXT data_source Factorbook Download track Download number_of_intervals 240 bp_covered 4,560 output_type transcription factor binding sites significant genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BJK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,994 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF890WJZ_CTKCTGGGARWYGTAGTYC_filtered.bed.gz processed_file_md5 dbc06f43395e034faaec0b1388f70f39 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF890WJZ_CTKCTGGGARWYGTAGTYC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF890WJZ_CTKCTGGGARWYGTAGTYC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF890WJZ_CTKCTGGGARWYGTAGTYC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF890WJZ_CTKCTGGGARWYGTAGTYC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 9a1350a00fd43278ec1c2aa84f5713ae data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF890WJZ;ENCODE_bigBed_id=ENCFF467OEO;PMID=34755879;Motif_sequence=CTKCTGGGARWYGTAGTYC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GABPA transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BJK] [Life stage: Child] [TFBS]
GABPA • MCF-7 NGFTBXFPZDD5E3 • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBXFPZDD5E3 data_source Factorbook Download track Download number_of_intervals 83 bp_covered 1,743 output_type transcription factor binding sites significant genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR038RXU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,580 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF158YBV_GCMYKCTGGGARWTGTAGTYC_filtered.bed.gz processed_file_md5 a6cc6a228eca68097654ae0d8fe0cbbb wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF158YBV_GCMYKCTGGGARWTGTAGTYC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF158YBV_GCMYKCTGGGARWTGTAGTYC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF158YBV_GCMYKCTGGGARWTGTAGTYC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF158YBV_GCMYKCTGGGARWTGTAGTYC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 641e4b03a56e76c6f924df46a964ce1e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7 stably expressing GABPA;Original_cell_type=MCF-7;Lab=Kevin White, UChicago;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF158YBV;ENCODE_bigBed_id=ENCFF951HFC;PMID=34755879;Motif_sequence=GCMYKCTGGGARWTGTAGTYC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding GABPA transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR038RXU] [Life stage: Adult] [TFBS]
GABPA • GM12878 NGFTBYBUQL622E • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBYBUQL622E data_source Factorbook Download track Download number_of_intervals 1,663 bp_covered 18,293 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR331HPA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 23,888 downloaded_date 07/10/2024 release_date 06/30/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF093KLR_GCCGCCATSTT_sorted.bed.gz processed_file_md5 a44eb74a9ebe092a9ef86f808d7242e0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF093KLR_GCCGCCATSTT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF093KLR_GCCGCCATSTT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF093KLR_GCCGCCATSTT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF093KLR_GCCGCCATSTT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a83bb2be70cf13865bdc72f8dc928155 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF093KLR;ENCODE_bigBed_id=ENCFF872TWR;PMID=34755879;Motif_sequence=GCCGCCATSTT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR331HPA] [TFBS]
GABPA • A549 NGFTBYJV2OTF3Z • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBYJV2OTF3Z data_source Factorbook Download track Download number_of_intervals 500 bp_covered 11,000 output_type transcription factor binding sites significant genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BPY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 7,525 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF343BIK_GRACTACAHTTCCCAGMAKGCC_filtered.bed.gz processed_file_md5 efcbb20cce5625e45eb513868676288d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF343BIK_GRACTACAHTTCCCAGMAKGCC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF343BIK_GRACTACAHTTCCCAGMAKGCC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF343BIK_GRACTACAHTTCCCAGMAKGCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF343BIK_GRACTACAHTTCCCAGMAKGCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b702057fefdc8e465b34d8df555f5b53 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF343BIK;ENCODE_bigBed_id=ENCFF045XZV;PMID=34755879;Motif_sequence=GRACTACAHTTCCCAGMAKGCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding GABPA transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BPY] [Life stage: Adult] [TFBS]
GABPA • K562 NGFTBZUBZW6JKX • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBZUBZW6JKX data_source Factorbook Download track Download number_of_intervals 26,940 bp_covered 296,340 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR290MUH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPA assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 258,544 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF173GUD_CACTTCCGGBB_sorted.bed.gz processed_file_md5 96fe36226cd600cde44e1f0f7e0eafa8 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF173GUD_CACTTCCGGBB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF173GUD_CACTTCCGGBB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF173GUD_CACTTCCGGBB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF173GUD_CACTTCCGGBB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1169ec1ad1a9f0dffb9aede4bc68d25b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing GABPA;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF173GUD;ENCODE_bigBed_id=ENCFF330AJD;PMID=34755879;Motif_sequence=CACTTCCGGBB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GABPA transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR290MUH] [Life stage: Adult] [TFBS]
Reference annotation (GABPA) NGHOMWYD7M7SWM • HOMER20513432 Motif finding Reference annotation (GABPA) TFBS Show metadata Download track Track metadata identifier NGHOMWYD7M7SWM data_source HOMER Download track Download number_of_intervals 941,274 bp_covered 9,412,740 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody GABPA assay Motif finding file_format bed bed6+5 Homer file_size 9,559,808 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/GABPA_ETS.hg38.processed.bed.gz processed_file_md5 f2d5a5b8a711bf6ac37b53af4d192d70 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/GABPA_ETS.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/GABPA_ETS.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=GABPA;DNA_binding_domain=ETS;Cell_type=Jurkat;Assay=ChIP-Seq;Origin=GSE17954;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding GABPA transcription factor binding sites (bed6+5 Homer) [TFBS]
GABPB1 • WTC11 NGENC3J4ZYGE5E • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENC3J4ZYGE5E data_source ENCODE Download track Download number_of_intervals 26,297 bp_covered 9,978,678 output_type conservative IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR561YGS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB1 assay TF ChIP-seq file_format bed narrowPeak file_size 503,559 downloaded_date 07/10/2025 release_date 09/02/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF826PXP.bed.gz processed_file_md5 fda0040058d249954d2260b9413f8f55 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF826PXP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF826PXP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF826PXP/@@download/ENCFF826PXP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF826PXP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6e549b0ae4bf8c1d4f0a246e0be861f7 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE230916;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2023-01-20,2022-08-31;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=fibroblast,stem cell,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC11,WTC-11;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) TF ChIP-seq GABPB1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR561YGS] [Life stage: Adult] [TF ChIP-seq peaks]
GABPB1 • K562 NGENC6M4DGKFCH • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC6M4DGKFCH data_source ENCODE Download track Download number_of_intervals 23,419 bp_covered 13,068,091 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR011WGT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB1 assay TF ChIP-seq file_format bed narrowPeak file_size 443,882 downloaded_date 05/15/2024 release_date 08/19/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF885NMS.bed.gz processed_file_md5 f003cc9cfb18e253c27394eb65908c47 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF885NMS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF885NMS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF885NMS/@@download/ENCFF885NMS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF885NMS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 67195726f27babe42ab6f181200860b4 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE230888;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-23,2022-08-16;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GABPB1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR011WGT] [Life stage: Adult] [TF ChIP-seq peaks]
GABPB1 • K562 NGENCBZZS3GMJU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCBZZS3GMJU data_source ENCODE Download track Download number_of_intervals 30,600 bp_covered 16,237,054 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR138YYY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB1 assay TF ChIP-seq file_format bed narrowPeak file_size 557,814 downloaded_date 06/12/2022 release_date 12/08/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF502QRX.bed.gz processed_file_md5 f0b8cf7786308d12bd7a51a66845efc0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF502QRX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF502QRX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF502QRX/@@download/ENCFF502QRX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF502QRX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0fd1b634e09f6ae75d4d28a281f1c527 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE127423,FactorBook:ENCSR138YYY;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GABPB1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR138YYY] [Life stage: Adult] [TF ChIP-seq peaks]
GABPB1 • WTC11 NGENCDTQZ7JZHG • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCDTQZ7JZHG data_source ENCODE Download track Download number_of_intervals 16,706 bp_covered 6,315,951 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR561YGS biological_replicate 2 technical_replicate 2_1 antibody GABPB1 assay TF ChIP-seq file_format bed narrowPeak file_size 305,097 downloaded_date 07/10/2025 release_date 09/02/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF987ZGR.bed.gz processed_file_md5 44850b42b7090b2e3228ecb76b130cbe wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF987ZGR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF987ZGR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF987ZGR/@@download/ENCFF987ZGR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF987ZGR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 29380eeb0075f6bc0425d60cdeaa1cb1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE230916;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2023-01-20,2022-08-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=fibroblast,stem cell,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC11,WTC-11;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 2) TF ChIP-seq GABPB1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR561YGS] [Life stage: Adult] [TF ChIP-seq peaks]
GABPB1 • K562 NGENCEJNNLN2HH • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCEJNNLN2HH data_source ENCODE Download track Download number_of_intervals 30,997 bp_covered 16,476,064 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR138YYY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB1 assay TF ChIP-seq file_format bed narrowPeak file_size 567,022 downloaded_date 06/12/2022 release_date 12/08/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF015GDS.bed.gz processed_file_md5 f06f255f7929233da008a000a4ec247c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF015GDS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF015GDS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF015GDS/@@download/ENCFF015GDS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF015GDS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7da1c86ca6b8fc871e89fa5d2c07e003 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE127423,FactorBook:ENCSR138YYY;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GABPB1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR138YYY] [Life stage: Adult] [TF ChIP-seq peaks]
GABPB1 • K562 NGENCEKWM66YAN • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCEKWM66YAN data_source ENCODE Download track Download number_of_intervals 26,062 bp_covered 13,710,781 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR138YYY biological_replicate 2 technical_replicate 2_1 antibody GABPB1 assay TF ChIP-seq file_format bed narrowPeak file_size 489,381 downloaded_date 06/12/2022 release_date 12/08/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF283FNT.bed.gz processed_file_md5 46a3ebdc78c82e12755c9f9b76a74e63 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF283FNT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF283FNT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF283FNT/@@download/ENCFF283FNT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF283FNT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 43c4df54b891c734851b68cb52770c12 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE127423,FactorBook:ENCSR138YYY;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq GABPB1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR138YYY] [Life stage: Adult] [TF ChIP-seq peaks]
GABPB1 • HepG2 NGENCFCNSFMSRR • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCFCNSFMSRR data_source ENCODE Download track Download number_of_intervals 25,385 bp_covered 9,586,979 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR462KYU biological_replicate 1 technical_replicate 1_1 antibody GABPB1 assay TF ChIP-seq file_format bed narrowPeak file_size 440,673 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF457LHD.bed.gz processed_file_md5 c63847c5bf5198ef6f91e0bcc53ff6b1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF457LHD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF457LHD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF457LHD/@@download/ENCFF457LHD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF457LHD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 773499e998583cc67aa19975dcf14ffb data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=FactorBook:ENCSR462KYU,GEO:GSE96181;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-11-08,2016-10-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq GABPB1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR462KYU] [Life stage: Child] [TF ChIP-seq peaks]