GABPB1 • HepG2 NGENCJQHTUP7LR • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCJQHTUP7LR data_source ENCODE Download track Download number_of_intervals 30,453 bp_covered 18,735,818 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR462KYU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB1 assay TF ChIP-seq file_format bed narrowPeak file_size 533,523 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF952DUN.bed.gz processed_file_md5 bd037a7c743b689e62739d860c62e566 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF952DUN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF952DUN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF952DUN/@@download/ENCFF952DUN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF952DUN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 01ff9721805d95b4f1ec9f5a44e26575 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=FactorBook:ENCSR462KYU,GEO:GSE96181;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-11-08,2016-10-11;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq GABPB1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR462KYU] [Life stage: Child] [TF ChIP-seq peaks]
GABPB1 • WTC11 NGENCK7JNPHB5G • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCK7JNPHB5G data_source ENCODE Download track Download number_of_intervals 19,195 bp_covered 7,254,633 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR561YGS biological_replicate 1 technical_replicate 1_1 antibody GABPB1 assay TF ChIP-seq file_format bed narrowPeak file_size 372,176 downloaded_date 07/10/2025 release_date 09/02/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF793CZO.bed.gz processed_file_md5 349491f7235d1de9087556050a8d8134 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF793CZO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF793CZO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF793CZO/@@download/ENCFF793CZO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF793CZO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1f033c756b7173f401836194041179b4 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE230916;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2023-01-20,2022-08-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=fibroblast,stem cell,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC11,WTC-11;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1) TF ChIP-seq GABPB1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR561YGS] [Life stage: Adult] [TF ChIP-seq peaks]
GABPB1 • K562 NGENCN6JLRI4DF • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCN6JLRI4DF data_source ENCODE Download track Download number_of_intervals 18,832 bp_covered 10,028,280 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR011WGT biological_replicate 1 technical_replicate 1_1 antibody GABPB1 assay TF ChIP-seq file_format bed narrowPeak file_size 357,259 downloaded_date 05/15/2024 release_date 08/19/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF928BUA.bed.gz processed_file_md5 5b221010e3cc5a892300975ce817264c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF928BUA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF928BUA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF928BUA/@@download/ENCFF928BUA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF928BUA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 41a191393f6ebdc4bb91a33d3e9bbbc8 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE230888;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-23,2022-08-16;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq GABPB1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR011WGT] [Life stage: Adult] [TF ChIP-seq peaks]
GABPB1 • WTC11 NGENCNKGRAX6OJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCNKGRAX6OJ data_source ENCODE Download track Download number_of_intervals 26,574 bp_covered 10,089,621 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR561YGS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB1 assay TF ChIP-seq file_format bed narrowPeak file_size 508,140 downloaded_date 07/10/2025 release_date 09/02/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF166QKI.bed.gz processed_file_md5 1fbe1a3c94d9cb9d804b48cc7b786633 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF166QKI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF166QKI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF166QKI/@@download/ENCFF166QKI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF166QKI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 44a19d905a8073a7d9698a5ff875683f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE230916;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2023-01-20,2022-08-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=fibroblast,stem cell,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC11,WTC-11;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) TF ChIP-seq GABPB1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR561YGS] [Life stage: Adult] [TF ChIP-seq peaks]
GABPB1 • HepG2 NGENCNV662ECER • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCNV662ECER data_source ENCODE Download track Download number_of_intervals 40,265 bp_covered 26,282,017 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR462KYU biological_replicate 2 technical_replicate 2_1 antibody GABPB1 assay TF ChIP-seq file_format bed narrowPeak file_size 677,015 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF928VWC.bed.gz processed_file_md5 d1842a573ad376305bb720844dda7335 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF928VWC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF928VWC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF928VWC/@@download/ENCFF928VWC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF928VWC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9141cafe2e79dc97fb059299b76a2d2a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=FactorBook:ENCSR462KYU,GEO:GSE96181;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-11-08,2016-10-11;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq GABPB1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR462KYU] [Life stage: Child] [TF ChIP-seq peaks]
GABPB1 • K562 NGENCRIEX2EBRM • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCRIEX2EBRM data_source ENCODE Download track Download number_of_intervals 13,913 bp_covered 7,938,409 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR011WGT biological_replicate 2 technical_replicate 2_1 antibody GABPB1 assay TF ChIP-seq file_format bed narrowPeak file_size 261,812 downloaded_date 05/15/2024 release_date 08/19/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF417DJC.bed.gz processed_file_md5 47ca075c6995343c6ffcd0e94f9427f6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF417DJC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF417DJC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF417DJC/@@download/ENCFF417DJC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF417DJC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fc409fc654e917ed589381e1dcd68cd9 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE230888;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-23,2022-08-16;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq GABPB1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR011WGT] [Life stage: Adult] [TF ChIP-seq peaks]
GABPB1 • K562 NGENCW44XKPC4O • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCW44XKPC4O data_source ENCODE Download track Download number_of_intervals 23,104 bp_covered 12,127,293 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR138YYY biological_replicate 1 technical_replicate 1_1 antibody GABPB1 assay TF ChIP-seq file_format bed narrowPeak file_size 414,915 downloaded_date 06/12/2022 release_date 12/08/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF074TFW.bed.gz processed_file_md5 334bf6c2e7a9014e8d5d4075f4da7f0f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF074TFW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF074TFW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF074TFW/@@download/ENCFF074TFW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF074TFW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a864433de2051beabec815480d169dc6 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE127423,FactorBook:ENCSR138YYY;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq GABPB1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR138YYY] [Life stage: Adult] [TF ChIP-seq peaks]
GABPB1 • HepG2 NGENCX2PY4OFDS • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCX2PY4OFDS data_source ENCODE Download track Download number_of_intervals 42,542 bp_covered 24,881,913 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR462KYU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB1 assay TF ChIP-seq file_format bed narrowPeak file_size 733,402 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF315AWN.bed.gz processed_file_md5 780198cb6a4d9fafdede2bf5b70b85dd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF315AWN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF315AWN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF315AWN/@@download/ENCFF315AWN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF315AWN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 940365352f5f2a532123cbc798283933 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=FactorBook:ENCSR462KYU,GEO:GSE96181;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-11-08,2016-10-11;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq GABPB1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR462KYU] [Life stage: Child] [TF ChIP-seq peaks]
GABPB1 • K562 NGENCYC4SQ6WZ6 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCYC4SQ6WZ6 data_source ENCODE Download track Download number_of_intervals 22,473 bp_covered 12,520,330 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR011WGT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB1 assay TF ChIP-seq file_format bed narrowPeak file_size 427,019 downloaded_date 05/15/2024 release_date 08/19/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF140TQM.bed.gz processed_file_md5 d76be847cd7ff48eaeb734f69fbcca21 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF140TQM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF140TQM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF140TQM/@@download/ENCFF140TQM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF140TQM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 31afad7ea93d92fc95841abf89120f0f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE230888;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-23,2022-08-16;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GABPB1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR011WGT] [Life stage: Adult] [TF ChIP-seq peaks]
GABPB1 • K562 NGFTB5MGB4ILOZ • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB5MGB4ILOZ data_source Factorbook Download track Download number_of_intervals 6,335 bp_covered 69,685 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR138YYY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 80,023 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF599CIT_GCCGCCATSTT_sorted.bed.gz processed_file_md5 c633a813f160a885afa7d47a946d46f6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF599CIT_GCCGCCATSTT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF599CIT_GCCGCCATSTT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF599CIT_GCCGCCATSTT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF599CIT_GCCGCCATSTT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4029a06b2f95c4fde0319feba99c8b59 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF599CIT;ENCODE_bigBed_id=ENCFF502QRX;PMID=34755879;Motif_sequence=GCCGCCATSTT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GABPB1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR138YYY] [Life stage: Adult] [TFBS]
GABPB1 • HepG2 NGFTB5OO7BV6GS • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB5OO7BV6GS data_source Factorbook Download track Download number_of_intervals 26,477 bp_covered 344,201 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR462KYU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 332,386 downloaded_date 07/10/2024 release_date 11/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF217XUD_MSBCACTTCCGGY_sorted.bed.gz processed_file_md5 37616ce43ab057f7c3ff5cb700aa8d66 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF217XUD_MSBCACTTCCGGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF217XUD_MSBCACTTCCGGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF217XUD_MSBCACTTCCGGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF217XUD_MSBCACTTCCGGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4c2483edcb5aa2a1cdf0e5fbea2f5980 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF217XUD;ENCODE_bigBed_id=ENCFF315AWN;PMID=34755879;Motif_sequence=MSBCACTTCCGGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GABPB1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR462KYU] [Life stage: Child] [TFBS]
GABPB1 • HepG2 NGFTB7J6QNJA4V • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB7J6QNJA4V data_source Factorbook Download track Download number_of_intervals 15,545 bp_covered 124,360 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR462KYU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 118,768 downloaded_date 07/10/2024 release_date 11/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF217XUD_SCGGAAGY_sorted.bed.gz processed_file_md5 a2b758c824375633d44826265b6e9b08 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF217XUD_SCGGAAGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF217XUD_SCGGAAGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF217XUD_SCGGAAGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF217XUD_SCGGAAGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2144d25d821c9e0962f5146b10154628 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF217XUD;ENCODE_bigBed_id=ENCFF315AWN;PMID=34755879;Motif_sequence=SCGGAAGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GABPB1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR462KYU] [Life stage: Child] [TFBS]
GABPB1 • K562 NGFTBFSQLA6M6B • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBFSQLA6M6B data_source Factorbook Download track Download number_of_intervals 25,574 bp_covered 716,072 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR138YYY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 500,364 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF599CIT_WGRACTACAHTTCCCAGMAKSCYSYGCG_sorted.bed.gz processed_file_md5 5bc335035bc210eda328399640c4c2f8 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF599CIT_WGRACTACAHTTCCCAGMAKSCYSYGCG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF599CIT_WGRACTACAHTTCCCAGMAKSCYSYGCG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF599CIT_WGRACTACAHTTCCCAGMAKSCYSYGCG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF599CIT_WGRACTACAHTTCCCAGMAKSCYSYGCG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 38a3f9801c5f74a499989173bf55c3e2 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF599CIT;ENCODE_bigBed_id=ENCFF502QRX;PMID=34755879;Motif_sequence=WGRACTACAHTTCCCAGMAKSCYSYGCG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GABPB1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR138YYY] [Life stage: Adult] [TFBS]
GABPB1 • HepG2 NGFTBFXQ2PPBCB • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBFXQ2PPBCB data_source Factorbook Download track Download number_of_intervals 12,545 bp_covered 137,995 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR462KYU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 137,879 downloaded_date 07/10/2024 release_date 11/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF217XUD_AAGATGGCGGC_sorted.bed.gz processed_file_md5 81053323c48634fb2c8af6f8a402ecda wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF217XUD_AAGATGGCGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF217XUD_AAGATGGCGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF217XUD_AAGATGGCGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF217XUD_AAGATGGCGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 40a2f1f19b95943d214c12c1c4fee878 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF217XUD;ENCODE_bigBed_id=ENCFF315AWN;PMID=34755879;Motif_sequence=AAGATGGCGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GABPB1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR462KYU] [Life stage: Child] [TFBS]
GABPB1 • K562 NGFTBHEWPYACNH • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBHEWPYACNH data_source Factorbook Download track Download number_of_intervals 25,729 bp_covered 334,477 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR138YYY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 341,099 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF599CIT_GVVCCGGAAGTGV_sorted.bed.gz processed_file_md5 be54f8a8b6d3f8c5eeb5fbec24bd218a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF599CIT_GVVCCGGAAGTGV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF599CIT_GVVCCGGAAGTGV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF599CIT_GVVCCGGAAGTGV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF599CIT_GVVCCGGAAGTGV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1b6fb95c2a4a377b7edded087474e046 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF599CIT;ENCODE_bigBed_id=ENCFF502QRX;PMID=34755879;Motif_sequence=GVVCCGGAAGTGV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GABPB1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR138YYY] [Life stage: Adult] [TFBS]
GABPB1 • K562 NGFTBHKTWUVBK3 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBHKTWUVBK3 data_source Factorbook Download track Download number_of_intervals 1,045 bp_covered 29,260 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR138YYY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 18,228 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF599CIT_WGRACTACAHTTCCCAGMAKSCYSYGCG_filtered.bed.gz processed_file_md5 ae9b893e87acffea54fd1d7057463389 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF599CIT_WGRACTACAHTTCCCAGMAKSCYSYGCG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF599CIT_WGRACTACAHTTCCCAGMAKSCYSYGCG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF599CIT_WGRACTACAHTTCCCAGMAKSCYSYGCG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF599CIT_WGRACTACAHTTCCCAGMAKSCYSYGCG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 38a3f9801c5f74a499989173bf55c3e2 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF599CIT;ENCODE_bigBed_id=ENCFF502QRX;PMID=34755879;Motif_sequence=WGRACTACAHTTCCCAGMAKSCYSYGCG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GABPB1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR138YYY] [Life stage: Adult] [TFBS]
GABPB1 • K562 NGFTBPC6MPHH6H • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBPC6MPHH6H data_source Factorbook Download track Download number_of_intervals 14,035 bp_covered 112,280 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR138YYY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 121,058 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF599CIT_RCTTCCGS_sorted.bed.gz processed_file_md5 fdaec2274c5d81e138c1bfb1ad807593 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF599CIT_RCTTCCGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF599CIT_RCTTCCGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF599CIT_RCTTCCGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF599CIT_RCTTCCGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2a9b455a90de2417e7c5bc4411c1f614 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF599CIT;ENCODE_bigBed_id=ENCFF502QRX;PMID=34755879;Motif_sequence=RCTTCCGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GABPB1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR138YYY] [Life stage: Adult] [TFBS]
GABPB1 • HepG2 NGFTBZT5DOA24I • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBZT5DOA24I data_source Factorbook Download track Download number_of_intervals 14,663 bp_covered 293,260 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR462KYU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 219,318 downloaded_date 07/10/2024 release_date 11/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF217XUD_GRAAACARRRRSRCMGVAAM_sorted.bed.gz processed_file_md5 b52d5d5bf59deeb89176476b6fc2ef42 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF217XUD_GRAAACARRRRSRCMGVAAM_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF217XUD_GRAAACARRRRSRCMGVAAM_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF217XUD_GRAAACARRRRSRCMGVAAM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF217XUD_GRAAACARRRRSRCMGVAAM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4cce685bf6b97ed04c2e953037ea6f25 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF217XUD;ENCODE_bigBed_id=ENCFF315AWN;PMID=34755879;Motif_sequence=GRAAACARRRRSRCMGVAAM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GABPB1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR462KYU] [Life stage: Child] [TFBS]
GABPB2 • K562 NGENCDM6LAZZYG • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCDM6LAZZYG data_source ENCODE Download track Download number_of_intervals 1,432 bp_covered 412,386 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR879HUU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB2 assay TF ChIP-seq file_format bed narrowPeak file_size 29,284 downloaded_date 06/12/2022 release_date 08/21/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF940MNT.bed.gz processed_file_md5 5096703a490c3f54ca08efa794aa0fac wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF940MNT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF940MNT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF940MNT/@@download/ENCFF940MNT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF940MNT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0117773d1ae7dfa9fa5b93e6d5cc658b data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE178011;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-05-18,2020-06-30;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GABPB2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR879HUU] [Life stage: Adult] [TF ChIP-seq peaks]
GABPB2 • K562 NGENCG7EEXBRCG • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCG7EEXBRCG data_source ENCODE Download track Download number_of_intervals 458 bp_covered 129,926 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR879HUU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GABPB2 assay TF ChIP-seq file_format bed narrowPeak file_size 9,565 downloaded_date 06/12/2022 release_date 08/21/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF304TBG.bed.gz processed_file_md5 5ec167ee3ebc18da04b8986192bbd55f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF304TBG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF304TBG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF304TBG/@@download/ENCFF304TBG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF304TBG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 90886187ea5216d7554c5268fe1aeed7 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE178011;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-05-18,2020-06-30;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GABPB2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR879HUU] [Life stage: Adult] [TF ChIP-seq peaks]