GABPB2 • K562 NGENCYMFEVBRE3 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCYMFEVBRE3 data_source ENCODE Download track Download number_of_intervals 1,227 bp_covered 340,347 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR879HUU biological_replicate 1 technical_replicate 1_1 antibody GABPB2 assay TF ChIP-seq file_format bed narrowPeak file_size 24,933 downloaded_date 06/12/2022 release_date 08/21/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF748UKD.bed.gz processed_file_md5 a16158f06edb959440302afc0d238103 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF748UKD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF748UKD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF748UKD/@@download/ENCFF748UKD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF748UKD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e4b30d0b3d77f0d781147e09467a6582 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE178011;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-05-18,2020-06-30;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq GABPB2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR879HUU] [Life stage: Adult] [TF ChIP-seq peaks]
GABPB2 • K562 NGENCZOW3EJO7J • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCZOW3EJO7J data_source ENCODE Download track Download number_of_intervals 448 bp_covered 128,120 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR879HUU biological_replicate 2 technical_replicate 2_1 antibody GABPB2 assay TF ChIP-seq file_format bed narrowPeak file_size 9,298 downloaded_date 06/12/2022 release_date 08/21/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF499CYW.bed.gz processed_file_md5 a50a9c87fa74d9e49f3fb8f8db4a62ef wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF499CYW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF499CYW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF499CYW/@@download/ENCFF499CYW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF499CYW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b783d775fd0387038b19f2e575df9675 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE178011;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-05-18,2020-06-30;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq GABPB2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR879HUU] [Life stage: Adult] [TF ChIP-seq peaks]
GARS • K562 NGENCGQFBYL2LM • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCGQFBYL2LM data_source ENCODE Download track Download number_of_intervals 1,520 bp_covered 66,762 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR448GXJ biological_replicate 2 technical_replicate 2_1 antibody GARS assay eCLIP file_format bed narrowPeak file_size 28,896 downloaded_date 05/15/2024 release_date 01/13/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF597FSD.bed.gz processed_file_md5 1e7e8e3ce34463d7ee485f8acfa413e6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF597FSD.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF597FSD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF597FSD/@@download/ENCFF597FSD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF597FSD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ee53b8be0ff111a7c0829a4504418382 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284848;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2022-07-19;Submitted_track_name=encode4_batch11a.4040_CLIP2_CLIP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.sorted.blacklist-removed.nh.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38 V29;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) eCLIP GARS peaks (narrowPeak) [Experiment: ENCSR448GXJ] [Life stage: Adult] [RNA binding]
GARS • K562 NGENCU77YMFYMW • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCU77YMFYMW data_source ENCODE Download track Download number_of_intervals 2,927 bp_covered 169,770 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR448GXJ biological_replicate 1 technical_replicate 1_1 antibody GARS assay eCLIP file_format bed narrowPeak file_size 48,699 downloaded_date 05/15/2024 release_date 01/13/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF129LEK.bed.gz processed_file_md5 5eccf9fc6585a0d5c35881e975bc2079 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF129LEK.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF129LEK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF129LEK/@@download/ENCFF129LEK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF129LEK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 17091ff7d86d90540f61022e2c153a9b data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284848;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2022-07-19;Submitted_track_name=encode4_batch11a.4040_CLIP1_CLIP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.sorted.blacklist-removed.nh.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38 V29;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) eCLIP GARS peaks (narrowPeak) [Experiment: ENCSR448GXJ] [Life stage: Adult] [RNA binding]
GARS • K562 NGENCXPZBE2JDQ • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCXPZBE2JDQ data_source ENCODE Download track Download number_of_intervals 580 bp_covered 18,539 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR448GXJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GARS assay eCLIP file_format bed narrowPeak file_size 12,740 downloaded_date 05/15/2024 release_date 02/01/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF588BHZ.bed.gz processed_file_md5 577cfd5352c69de1675e9519ab4d6f0e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF588BHZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF588BHZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF588BHZ/@@download/ENCFF588BHZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF588BHZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c825c2844f63dc7d1361f19d3fe3fa58 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284848;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2022-07-19;Submitted_track_name=4040_CLIP1_rep1.vs.4040_CLIP2_rep2.sorted.nh.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38 V29;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) eCLIP GARS peaks (narrowPeak) [Experiment: ENCSR448GXJ] [Life stage: Adult] [RNA binding]
GATA1 • Erythroblast NGENCDSNQZ73EM • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Erythroblast TF Show metadata Download track Track metadata identifier NGENCDSNQZ73EM data_source ENCODE Download track Download number_of_intervals 2,062 bp_covered 844,553 output_type conservative IDR thresholded peaks genome_build hg38 cell_type Erythroblast biosample_type Primary cell biosample_term_id CL:0000765 tissue_category Blood encode_experiment_id ENCSR000EXR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay TF ChIP-seq file_format bed narrowPeak file_size 40,064 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF541JYS.bed.gz processed_file_md5 c1004447edd53ae38906fa228b9eed1d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF541JYS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF541JYS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF541JYS/@@download/ENCFF541JYS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF541JYS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e1ca97d75dcb0d253ec97504da40d996 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens erythroblast embryo (16-19 weeks);Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=embryonic 16-19 weeks;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000EXR,GEO:GSM935333,UCSC-ENCODE-hg19:wgEncodeEH001785;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=erythroblast;ENCODE_cell_slims=hematopoietic cell,myeloid cell;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=normoblast;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000765;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name ENCODE Erythroblast (repl. 1, 2) TF ChIP-seq GATA1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EXR] [Life stage: Embryonic] [TF ChIP-seq peaks]
GATA1 • K562 NGENCDYD5CL4AK • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCDYD5CL4AK data_source ENCODE Download track Download number_of_intervals 820 bp_covered 269,464 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EWM biological_replicate 1 technical_replicate 1_1 antibody GATA1 assay TF ChIP-seq file_format bed narrowPeak file_size 14,060 downloaded_date 06/12/2022 release_date 01/01/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF190SJI.bed.gz processed_file_md5 c3864bae055054ad39bd85edda57b4b6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF190SJI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF190SJI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF190SJI/@@download/ENCFF190SJI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF190SJI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d23e4f2392fe3d691a9b78dd1429e2c4 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSM935540,FactorBook:ENCSR000EWM,UCSC-ENCODE-hg19:wgEncodeEH000638;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29,2011-10-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq GATA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EWM] [Life stage: Adult] [TF ChIP-seq peaks]
GATA1 • K562 NGENCERDJH6XZU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCERDJH6XZU data_source ENCODE Download track Download number_of_intervals 4,603 bp_covered 1,323,152 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EWM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay TF ChIP-seq file_format bed narrowPeak file_size 77,813 downloaded_date 06/12/2022 release_date 01/01/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF876GFS.bed.gz processed_file_md5 5e634cf2fc473eb2944fabbd929310a1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF876GFS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF876GFS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF876GFS/@@download/ENCFF876GFS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF876GFS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e496ddc7e07f6739a7bc2b38bb74af0e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSM935540,FactorBook:ENCSR000EWM,UCSC-ENCODE-hg19:wgEncodeEH000638;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29,2011-10-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GATA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EWM] [Life stage: Adult] [TF ChIP-seq peaks]
GATA1 • Erythroblast NGENCETY4KAJFK • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Erythroblast TF Show metadata Download track Track metadata identifier NGENCETY4KAJFK data_source ENCODE Download track Download number_of_intervals 2,558 bp_covered 1,047,913 output_type IDR thresholded peaks genome_build hg38 cell_type Erythroblast biosample_type Primary cell biosample_term_id CL:0000765 tissue_category Blood encode_experiment_id ENCSR000EXR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay TF ChIP-seq file_format bed narrowPeak file_size 49,291 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF125LDD.bed.gz processed_file_md5 5a5977db22772f1d22bbbe9d778db2d2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF125LDD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF125LDD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF125LDD/@@download/ENCFF125LDD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF125LDD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1317a8ccd41d8418c709d918e1a7009c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens erythroblast embryo (16-19 weeks);Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=embryonic 16-19 weeks;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000EXR,GEO:GSM935333,UCSC-ENCODE-hg19:wgEncodeEH001785;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=erythroblast;ENCODE_cell_slims=hematopoietic cell,myeloid cell;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=normoblast;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000765;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name ENCODE Erythroblast (repl. 1, 2) TF ChIP-seq GATA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EXR] [Life stage: Embryonic] [TF ChIP-seq peaks]
GATA1 • Erythroblast NGENCF7WPBA56T • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Erythroblast TF Show metadata Download track Track metadata identifier NGENCF7WPBA56T data_source ENCODE Download track Download number_of_intervals 38,463 bp_covered 21,737,573 output_type IDR thresholded peaks genome_build hg38 cell_type Erythroblast biosample_type Primary cell biosample_term_id CL:0000765 tissue_category Blood encode_experiment_id ENCSR000EXP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay TF ChIP-seq file_format bed narrowPeak file_size 644,003 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF867JAR.bed.gz processed_file_md5 14c54c835ab3b209788da0f82bd2c61c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF867JAR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF867JAR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF867JAR/@@download/ENCFF867JAR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF867JAR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5a410f4ff37616231e138d2f4eb47bba data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens erythroblast male;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM935465,FactorBook:ENCSR000EXP,UCSC-ENCODE-hg19:wgEncodeEH001765;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=erythroblast;ENCODE_cell_slims=hematopoietic cell,myeloid cell;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=normoblast;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000765;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ENCODE Erythroblast (repl. 1, 2) TF ChIP-seq GATA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EXP] [TF ChIP-seq peaks]
GATA1 • K562 NGENCHWKDEJM5I • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCHWKDEJM5I data_source ENCODE Download track Download number_of_intervals 14,676 bp_covered 3,526,317 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EFT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay TF ChIP-seq file_format bed narrowPeak file_size 282,092 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF094CMK.bed.gz processed_file_md5 5baf71125a5e35c4a6d088ac725f7a6c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF094CMK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF094CMK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF094CMK/@@download/ENCFF094CMK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF094CMK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 12726f334505945d9120391c343c3129 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=UCSC-ENCODE-hg19:wgEncodeEH003368,GEO:GSM1003608,FactorBook:ENCSR000EFT;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-08-20,2011-10-29;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GATA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EFT] [Life stage: Adult] [TF ChIP-seq peaks]
GATA1 • Erythroblast NGENCMIY27HUST • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Erythroblast TF Show metadata Download track Track metadata identifier NGENCMIY27HUST data_source ENCODE Download track Download number_of_intervals 1,993 bp_covered 787,846 output_type IDR thresholded peaks genome_build hg38 cell_type Erythroblast biosample_type Primary cell biosample_term_id CL:0000765 tissue_category Blood encode_experiment_id ENCSR000EXR biological_replicate 2 technical_replicate 2_1 antibody GATA1 assay TF ChIP-seq file_format bed narrowPeak file_size 37,596 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF127CZR.bed.gz processed_file_md5 98e3afbfdfc8e80b9b55ac4b4c1680bc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF127CZR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF127CZR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF127CZR/@@download/ENCFF127CZR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF127CZR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 65ebf51a8bc7ea08f64c7ef98732d8f8 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens erythroblast embryo (16-19 weeks);Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=embryonic 16-19 weeks;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000EXR,GEO:GSM935333,UCSC-ENCODE-hg19:wgEncodeEH001785;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=erythroblast;ENCODE_cell_slims=hematopoietic cell,myeloid cell;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=normoblast;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000765;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name ENCODE Erythroblast (repl. 2) TF ChIP-seq GATA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EXR] [Life stage: Embryonic] [TF ChIP-seq peaks]
GATA1 • K562 NGENCOZUUFY3D4 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCOZUUFY3D4 data_source ENCODE Download track Download number_of_intervals 12,052 bp_covered 2,870,211 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EFT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay TF ChIP-seq file_format bed narrowPeak file_size 232,865 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF505HIM.bed.gz processed_file_md5 6dab440f557d8464efe28828bfe28ae9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF505HIM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF505HIM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF505HIM/@@download/ENCFF505HIM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF505HIM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f98ae77f4fbeb618135c79e2a00eac86 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=UCSC-ENCODE-hg19:wgEncodeEH003368,GEO:GSM1003608,FactorBook:ENCSR000EFT;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-08-20,2011-10-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GATA1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EFT] [Life stage: Adult] [TF ChIP-seq peaks]
GATA1 • Erythroblast NGENCRII6B4EGD • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Erythroblast TF Show metadata Download track Track metadata identifier NGENCRII6B4EGD data_source ENCODE Download track Download number_of_intervals 30,150 bp_covered 16,740,326 output_type conservative IDR thresholded peaks genome_build hg38 cell_type Erythroblast biosample_type Primary cell biosample_term_id CL:0000765 tissue_category Blood encode_experiment_id ENCSR000EXP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay TF ChIP-seq file_format bed narrowPeak file_size 507,245 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF808OZI.bed.gz processed_file_md5 b8b7eeaacb5f16ad7f131f1fa4ed5289 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF808OZI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF808OZI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF808OZI/@@download/ENCFF808OZI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF808OZI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b2b65cb271e51ce59f29e94896df9168 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens erythroblast male;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM935465,FactorBook:ENCSR000EXP,UCSC-ENCODE-hg19:wgEncodeEH001765;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=erythroblast;ENCODE_cell_slims=hematopoietic cell,myeloid cell;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=normoblast;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000765;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ENCODE Erythroblast (repl. 1, 2) TF ChIP-seq GATA1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EXP] [TF ChIP-seq peaks]
GATA1 • Erythroblast NGENCTS6BCNRXE • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Erythroblast TF Show metadata Download track Track metadata identifier NGENCTS6BCNRXE data_source ENCODE Download track Download number_of_intervals 14,307 bp_covered 7,844,216 output_type IDR thresholded peaks genome_build hg38 cell_type Erythroblast biosample_type Primary cell biosample_term_id CL:0000765 tissue_category Blood encode_experiment_id ENCSR000EXP biological_replicate 2 technical_replicate 2_1 antibody GATA1 assay TF ChIP-seq file_format bed narrowPeak file_size 237,746 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF196ZBR.bed.gz processed_file_md5 b485f4723f4f612139406e3d1ffc6d80 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF196ZBR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF196ZBR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF196ZBR/@@download/ENCFF196ZBR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF196ZBR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 201baf1cd60eba146b027e2fd1c2274d data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens erythroblast male;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM935465,FactorBook:ENCSR000EXP,UCSC-ENCODE-hg19:wgEncodeEH001765;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=erythroblast;ENCODE_cell_slims=hematopoietic cell,myeloid cell;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=normoblast;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000765;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ENCODE Erythroblast (repl. 2) TF ChIP-seq GATA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EXP] [TF ChIP-seq peaks]
GATA1 • K562 NGENCUVHTJXR32 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCUVHTJXR32 data_source ENCODE Download track Download number_of_intervals 2,799 bp_covered 738,083 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EWM biological_replicate 2 technical_replicate 2_1 antibody GATA1 assay TF ChIP-seq file_format bed narrowPeak file_size 46,231 downloaded_date 06/12/2022 release_date 01/01/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF995XWA.bed.gz processed_file_md5 1c88063549881cf4830c33851643b559 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF995XWA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF995XWA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF995XWA/@@download/ENCFF995XWA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF995XWA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0a4ea422799bf2c7eba28f8387fb72fd data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSM935540,FactorBook:ENCSR000EWM,UCSC-ENCODE-hg19:wgEncodeEH000638;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29,2011-10-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq GATA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EWM] [Life stage: Adult] [TF ChIP-seq peaks]
GATA1 • K562 NGENCV33PXMPUH • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCV33PXMPUH data_source ENCODE Download track Download number_of_intervals 3,326 bp_covered 945,160 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EWM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay TF ChIP-seq file_format bed narrowPeak file_size 56,430 downloaded_date 06/12/2022 release_date 01/01/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF908LVB.bed.gz processed_file_md5 aae8aab60e761d3863f742ef2df7f59f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF908LVB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF908LVB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF908LVB/@@download/ENCFF908LVB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF908LVB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c5bdd265a1fca5c47f5c42910389f6b2 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSM935540,FactorBook:ENCSR000EWM,UCSC-ENCODE-hg19:wgEncodeEH000638;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29,2011-10-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GATA1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EWM] [Life stage: Adult] [TF ChIP-seq peaks]
GATA1 • K562 NGENCV4GN6HZKX • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCV4GN6HZKX data_source ENCODE Download track Download number_of_intervals 11,421 bp_covered 2,655,611 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EFT biological_replicate 1 technical_replicate 1_1 antibody GATA1 assay TF ChIP-seq file_format bed narrowPeak file_size 213,530 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF655RYO.bed.gz processed_file_md5 01558edf232550372213df0aaf5b7fa5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF655RYO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF655RYO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF655RYO/@@download/ENCFF655RYO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF655RYO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1131ead0436c3b0f3e43e2afbd67dba0 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=UCSC-ENCODE-hg19:wgEncodeEH003368,GEO:GSM1003608,FactorBook:ENCSR000EFT;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-08-20,2011-10-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq GATA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EFT] [Life stage: Adult] [TF ChIP-seq peaks]
GATA1 • Erythroblast NGENCWGZP4HQDF • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Erythroblast TF Show metadata Download track Track metadata identifier NGENCWGZP4HQDF data_source ENCODE Download track Download number_of_intervals 1,079 bp_covered 345,280 output_type IDR thresholded peaks genome_build hg38 cell_type Erythroblast biosample_type Primary cell biosample_term_id CL:0000765 tissue_category Blood encode_experiment_id ENCSR000EXR biological_replicate 1 technical_replicate 1_1 antibody GATA1 assay TF ChIP-seq file_format bed narrowPeak file_size 20,248 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF205TWO.bed.gz processed_file_md5 e38ebfcf88cec24cbe1f1258842e73c5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF205TWO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF205TWO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF205TWO/@@download/ENCFF205TWO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF205TWO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7a0e6b413ec32f0dcbabdf2439dd5de5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens erythroblast embryo (16-19 weeks);Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=embryonic 16-19 weeks;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000EXR,GEO:GSM935333,UCSC-ENCODE-hg19:wgEncodeEH001785;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=erythroblast;ENCODE_cell_slims=hematopoietic cell,myeloid cell;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=normoblast;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000765;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name ENCODE Erythroblast (repl. 1) TF ChIP-seq GATA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EXR] [Life stage: Embryonic] [TF ChIP-seq peaks]
GATA1 • Erythroblast NGENCWRAMQ663J • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Erythroblast TF Show metadata Download track Track metadata identifier NGENCWRAMQ663J data_source ENCODE Download track Download number_of_intervals 24,343 bp_covered 13,231,564 output_type IDR thresholded peaks genome_build hg38 cell_type Erythroblast biosample_type Primary cell biosample_term_id CL:0000765 tissue_category Blood encode_experiment_id ENCSR000EXP biological_replicate 1 technical_replicate 1_1 antibody GATA1 assay TF ChIP-seq file_format bed narrowPeak file_size 404,169 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF920FZN.bed.gz processed_file_md5 ec3c8fd3bb32d099dea6bffbeb945820 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF920FZN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF920FZN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF920FZN/@@download/ENCFF920FZN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF920FZN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 cae10ef8465592a09b4fa0523c78c9ff data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens erythroblast male;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM935465,FactorBook:ENCSR000EXP,UCSC-ENCODE-hg19:wgEncodeEH001765;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=erythroblast;ENCODE_cell_slims=hematopoietic cell,myeloid cell;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=normoblast;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000765;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ENCODE Erythroblast (repl. 1) TF ChIP-seq GATA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EXP] [TF ChIP-seq peaks]