GATA1 • K562 NGENCYKMCWZJQ2 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCYKMCWZJQ2 data_source ENCODE Download track Download number_of_intervals 5,783 bp_covered 1,335,437 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EFT biological_replicate 2 technical_replicate 2_1 antibody GATA1 assay TF ChIP-seq file_format bed narrowPeak file_size 110,939 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF942NYW.bed.gz processed_file_md5 487a4de7f66f540289fdbdd60e368a69 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF942NYW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF942NYW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF942NYW/@@download/ENCFF942NYW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF942NYW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3091b08208972e003d5d86e583a1017a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=UCSC-ENCODE-hg19:wgEncodeEH003368,GEO:GSM1003608,FactorBook:ENCSR000EFT;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-08-20,2011-10-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq GATA1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EFT] [Life stage: Adult] [TF ChIP-seq peaks]
GATA1 • Erythroblast NGFTB2IELF5VUM • Factorbook34755879 Motif finding Erythroblast TFBS Show metadata Download track Track metadata identifier NGFTB2IELF5VUM data_source Factorbook Download track Download number_of_intervals 18,369 bp_covered 146,952 output_type transcription factor binding sites all genome_build hg38 cell_type Erythroblast biosample_type Primary cell biosample_term_id CL:0000765 tissue_category Blood encode_experiment_id ENCSR000EXP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 158,678 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF853VZF_SCYTSCWG_sorted.bed.gz processed_file_md5 62519372377629ba268700b7f55f67ff wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF853VZF_SCYTSCWG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF853VZF_SCYTSCWG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF853VZF_SCYTSCWG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF853VZF_SCYTSCWG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 fa0b452963f08c3bdd1f3be64109f795 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens erythroblast male;Original_cell_type=erythroblast;Lab=Peggy Farnham, USC;System=circulatory system;ENCODE_BED_id=ENCFF853VZF;ENCODE_bigBed_id=ENCFF867JAR;PMID=34755879;Motif_sequence=SCYTSCWG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000765;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Erythroblast (repl. 1, 2) Motif finding GATA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EXP] [TFBS]
GATA1 • Erythroblast NGFTB36CRYZBZI • Factorbook34755879 Motif finding Erythroblast TFBS Show metadata Download track Track metadata identifier NGFTB36CRYZBZI data_source Factorbook Download track Download number_of_intervals 18,732 bp_covered 206,052 output_type transcription factor binding sites all genome_build hg38 cell_type Erythroblast biosample_type Primary cell biosample_term_id CL:0000765 tissue_category Blood encode_experiment_id ENCSR000EXP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 197,387 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF853VZF_NSAGATAAGVV_sorted.bed.gz processed_file_md5 5c324fd3ee6445bf668d803b5682a8df wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF853VZF_NSAGATAAGVV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF853VZF_NSAGATAAGVV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF853VZF_NSAGATAAGVV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF853VZF_NSAGATAAGVV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d7d2079e8fdeafdd83c954ee710c9bcc data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens erythroblast male;Original_cell_type=erythroblast;Lab=Peggy Farnham, USC;System=circulatory system;ENCODE_BED_id=ENCFF853VZF;ENCODE_bigBed_id=ENCFF867JAR;PMID=34755879;Motif_sequence=NSAGATAAGVV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000765;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Erythroblast (repl. 1, 2) Motif finding GATA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EXP] [TFBS]
GATA1 • K562 NGFTB3MYYM4MMG • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB3MYYM4MMG data_source Factorbook Download track Download number_of_intervals 2,180 bp_covered 17,440 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EWM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 25,522 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF509ZLE_CTTATCTS_sorted.bed.gz processed_file_md5 f50eeda82d787bac7fe068efec79f6b0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF509ZLE_CTTATCTS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF509ZLE_CTTATCTS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF509ZLE_CTTATCTS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF509ZLE_CTTATCTS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 938116c273cae1fb32e402ecddbd7316 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Peggy Farnham, USC;System=immune system;ENCODE_BED_id=ENCFF509ZLE;ENCODE_bigBed_id=ENCFF876GFS;PMID=34755879;Motif_sequence=CTTATCTS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GATA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EWM] [Life stage: Adult] [TFBS]
GATA1 • Erythroblast NGFTB3QOT4E52D • Factorbook34755879 Motif finding Erythroblast TFBS Show metadata Download track Track metadata identifier NGFTB3QOT4E52D data_source Factorbook Download track Download number_of_intervals 9 bp_covered 189 output_type transcription factor binding sites significant genome_build hg38 cell_type Erythroblast biosample_type Primary cell biosample_term_id CL:0000765 tissue_category Blood encode_experiment_id ENCSR000EXR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 512 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF802VPT_GGGCTTGCCTRAGACATGCYC_filtered.bed.gz processed_file_md5 65468dcbae900aaf78fc8e803a13a0ce wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF802VPT_GGGCTTGCCTRAGACATGCYC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF802VPT_GGGCTTGCCTRAGACATGCYC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF802VPT_GGGCTTGCCTRAGACATGCYC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF802VPT_GGGCTTGCCTRAGACATGCYC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b0cdff988bb8c7744c08645c97df1b23 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens erythroblast embryo (16-19 weeks);Original_cell_type=erythroblast;Lab=Peggy Farnham, USC;System=circulatory system;ENCODE_BED_id=ENCFF802VPT;ENCODE_bigBed_id=ENCFF125LDD;PMID=34755879;Motif_sequence=GGGCTTGCCTRAGACATGCYC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000765;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name Factorbook Erythroblast (repl. 1, 2) Motif finding GATA1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000EXR] [Life stage: Embryonic] [TFBS]
GATA1 • Erythroblast NGFTBEADCXONAW • Factorbook34755879 Motif finding Erythroblast TFBS Show metadata Download track Track metadata identifier NGFTBEADCXONAW data_source Factorbook Download track Download number_of_intervals 17,923 bp_covered 143,384 output_type transcription factor binding sites all genome_build hg38 cell_type Erythroblast biosample_type Primary cell biosample_term_id CL:0000765 tissue_category Blood encode_experiment_id ENCSR000EXP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 144,776 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF853VZF_DGCAGCTG_sorted.bed.gz processed_file_md5 463b58cbbd76e16d0839b7e5abd25701 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF853VZF_DGCAGCTG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF853VZF_DGCAGCTG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF853VZF_DGCAGCTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF853VZF_DGCAGCTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 74fbb7e990526b2d5a1080aed0ee391d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens erythroblast male;Original_cell_type=erythroblast;Lab=Peggy Farnham, USC;System=circulatory system;ENCODE_BED_id=ENCFF853VZF;ENCODE_bigBed_id=ENCFF867JAR;PMID=34755879;Motif_sequence=DGCAGCTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000765;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Erythroblast (repl. 1, 2) Motif finding GATA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EXP] [TFBS]
GATA1 • Erythroblast NGFTBIWH3NMA32 • Factorbook34755879 Motif finding Erythroblast TFBS Show metadata Download track Track metadata identifier NGFTBIWH3NMA32 data_source Factorbook Download track Download number_of_intervals 1,130 bp_covered 9,040 output_type transcription factor binding sites all genome_build hg38 cell_type Erythroblast biosample_type Primary cell biosample_term_id CL:0000765 tissue_category Blood encode_experiment_id ENCSR000EXR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 11,831 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF802VPT_DGCAGMTG_sorted.bed.gz processed_file_md5 57476bb1e1ff848eb3e5e83318b525d9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF802VPT_DGCAGMTG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF802VPT_DGCAGMTG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF802VPT_DGCAGMTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF802VPT_DGCAGMTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 978f1a80fc057f13e0cb81abaac734e9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens erythroblast embryo (16-19 weeks);Original_cell_type=erythroblast;Lab=Peggy Farnham, USC;System=circulatory system;ENCODE_BED_id=ENCFF802VPT;ENCODE_bigBed_id=ENCFF125LDD;PMID=34755879;Motif_sequence=DGCAGMTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000765;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name Factorbook Erythroblast (repl. 1, 2) Motif finding GATA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EXR] [Life stage: Embryonic] [TFBS]
GATA1 • K562 NGFTBMAT27F2MX • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBMAT27F2MX data_source Factorbook Download track Download number_of_intervals 7,145 bp_covered 57,160 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EFT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 73,498 downloaded_date 07/10/2024 release_date 08/20/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF657CTC_CTTATCTB_sorted.bed.gz processed_file_md5 32710d18ae6e7da58c602098e0d6e654 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF657CTC_CTTATCTB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF657CTC_CTTATCTB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF657CTC_CTTATCTB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF657CTC_CTTATCTB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4737d0f2b4efa57c20a17f07e7930f11 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF657CTC;ENCODE_bigBed_id=ENCFF094CMK;PMID=34755879;Motif_sequence=CTTATCTB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GATA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EFT] [Life stage: Adult] [TFBS]
GATA1 • Erythroblast NGFTBNBAZOXH37 • Factorbook34755879 Motif finding Erythroblast TFBS Show metadata Download track Track metadata identifier NGFTBNBAZOXH37 data_source Factorbook Download track Download number_of_intervals 1,845 bp_covered 20,295 output_type transcription factor binding sites all genome_build hg38 cell_type Erythroblast biosample_type Primary cell biosample_term_id CL:0000765 tissue_category Blood encode_experiment_id ENCSR000EXR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 26,769 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF802VPT_VSAGATAAGVV_sorted.bed.gz processed_file_md5 a4f79d200420526cc2c58c6d6add7ac8 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF802VPT_VSAGATAAGVV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF802VPT_VSAGATAAGVV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF802VPT_VSAGATAAGVV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF802VPT_VSAGATAAGVV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 78b8a4a1827101b572736b3825922b88 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens erythroblast embryo (16-19 weeks);Original_cell_type=erythroblast;Lab=Peggy Farnham, USC;System=circulatory system;ENCODE_BED_id=ENCFF802VPT;ENCODE_bigBed_id=ENCFF125LDD;PMID=34755879;Motif_sequence=VSAGATAAGVV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000765;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name Factorbook Erythroblast (repl. 1, 2) Motif finding GATA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EXR] [Life stage: Embryonic] [TFBS]
GATA1 • K562 NGFTBOL5ZJZLX4 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBOL5ZJZLX4 data_source Factorbook Download track Download number_of_intervals 8,232 bp_covered 156,408 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EFT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 156,351 downloaded_date 07/10/2024 release_date 08/20/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF657CTC_BCTTATCWSNNNNNNVCAG_sorted.bed.gz processed_file_md5 ea234b8339325c7bbab008b2d6886e65 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF657CTC_BCTTATCWSNNNNNNVCAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF657CTC_BCTTATCWSNNNNNNVCAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF657CTC_BCTTATCWSNNNNNNVCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF657CTC_BCTTATCWSNNNNNNVCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 27a3956067d7e4b350303251733aa420 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF657CTC;ENCODE_bigBed_id=ENCFF094CMK;PMID=34755879;Motif_sequence=BCTTATCWSNNNNNNVCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GATA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EFT] [Life stage: Adult] [TFBS]
GATA1 • Erythroblast NGFTBSBZRZGJRJ • Factorbook34755879 Motif finding Erythroblast TFBS Show metadata Download track Track metadata identifier NGFTBSBZRZGJRJ data_source Factorbook Download track Download number_of_intervals 470 bp_covered 9,870 output_type transcription factor binding sites all genome_build hg38 cell_type Erythroblast biosample_type Primary cell biosample_term_id CL:0000765 tissue_category Blood encode_experiment_id ENCSR000EXR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 9,856 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF802VPT_GGGCTTGCCTRAGACATGCYC_sorted.bed.gz processed_file_md5 e4271f2f566abe4cde1fb14b41338206 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF802VPT_GGGCTTGCCTRAGACATGCYC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF802VPT_GGGCTTGCCTRAGACATGCYC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF802VPT_GGGCTTGCCTRAGACATGCYC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF802VPT_GGGCTTGCCTRAGACATGCYC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b0cdff988bb8c7744c08645c97df1b23 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens erythroblast embryo (16-19 weeks);Original_cell_type=erythroblast;Lab=Peggy Farnham, USC;System=circulatory system;ENCODE_BED_id=ENCFF802VPT;ENCODE_bigBed_id=ENCFF125LDD;PMID=34755879;Motif_sequence=GGGCTTGCCTRAGACATGCYC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000765;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name Factorbook Erythroblast (repl. 1, 2) Motif finding GATA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EXR] [Life stage: Embryonic] [TFBS]
GATA1 • K562 NGFTBY23Y2CEE2 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBY23Y2CEE2 data_source Factorbook Download track Download number_of_intervals 3,037 bp_covered 57,703 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EWM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 60,609 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF509ZLE_VTGSNVVSNNSAGATAAGV_sorted.bed.gz processed_file_md5 1d70603e8249a909d7b1b6bbe4670d62 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF509ZLE_VTGSNVVSNNSAGATAAGV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF509ZLE_VTGSNVVSNNSAGATAAGV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF509ZLE_VTGSNVVSNNSAGATAAGV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF509ZLE_VTGSNVVSNNSAGATAAGV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a0d4cc970b8e6abeafdbbd81eec30461 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Peggy Farnham, USC;System=immune system;ENCODE_BED_id=ENCFF509ZLE;ENCODE_bigBed_id=ENCFF876GFS;PMID=34755879;Motif_sequence=VTGSNVVSNNSAGATAAGV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GATA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EWM] [Life stage: Adult] [TFBS]
GATA1 • K562 NGFTBZNLP2LPJC • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBZNLP2LPJC data_source Factorbook Download track Download number_of_intervals 2,229 bp_covered 17,832 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EWM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 23,121 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF509ZLE_KGCWGCWG_sorted.bed.gz processed_file_md5 237eec6599ba015446acd523f0eb3d13 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF509ZLE_KGCWGCWG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF509ZLE_KGCWGCWG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF509ZLE_KGCWGCWG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF509ZLE_KGCWGCWG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 fdaa06ff8c963a3fb7dc1f1d4290c12d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Peggy Farnham, USC;System=immune system;ENCODE_BED_id=ENCFF509ZLE;ENCODE_bigBed_id=ENCFF876GFS;PMID=34755879;Motif_sequence=KGCWGCWG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GATA1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EWM] [Life stage: Adult] [TFBS]
Reference annotation (GATA1) NGHOMI5WEASQGS • HOMER20513432 Motif finding Reference annotation (GATA1) TFBS Show metadata Download track Track metadata identifier NGHOMI5WEASQGS data_source HOMER Download track Download number_of_intervals 1,015,590 bp_covered 10,155,900 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody GATA1 assay Motif finding file_format bed bed6+5 Homer file_size 10,495,900 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Gata1_Zf.hg38.processed.bed.gz processed_file_md5 866bd6396a96d746a18e1089c6817ebf wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Gata1_Zf.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Gata1_Zf.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=Gata1;DNA_binding_domain=Zf;Cell_type=K562;Assay=ChIP-Seq;Origin=GSE18829;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding GATA1 transcription factor binding sites (bed6+5 Homer) [TFBS]
GATA2 • K562 NGENC2TY63KDFM • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC2TY63KDFM data_source ENCODE Download track Download number_of_intervals 21,628 bp_covered 11,967,577 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DKA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA2 assay TF ChIP-seq file_format bed narrowPeak file_size 394,097 downloaded_date 06/12/2022 release_date 01/06/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF830LLA.bed.gz processed_file_md5 c9e3797fddf784dd1d825898ec7fe67e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF830LLA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF830LLA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF830LLA/@@download/ENCFF830LLA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF830LLA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 39755551ff0aed7bf13e862715b6d767 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 stably expressing GATA2;Lab=Kevin White, UChicago;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001208,GEO:GSM777641,FactorBook:ENCSR000DKA;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-06-03;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GATA2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DKA] [Life stage: Adult] [TF ChIP-seq peaks]
GATA2 • Endothelial cell NGENC2XOMIO6A3 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Endothelial cell TF Show metadata Download track Track metadata identifier NGENC2XOMIO6A3 data_source ENCODE Download track Download number_of_intervals 18,743 bp_covered 7,081,144 output_type IDR thresholded peaks genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR000EVW biological_replicate 1 technical_replicate 1_1 antibody GATA2 assay TF ChIP-seq file_format bed narrowPeak file_size 320,328 downloaded_date 06/12/2022 release_date 02/12/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF662YVZ.bed.gz processed_file_md5 4b9db27e854c090d9e5cca893fa46e07 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF662YVZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF662YVZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF662YVZ/@@download/ENCFF662YVZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF662YVZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1502a8573d717c1a880f452e4768bd4d data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM935347,FactorBook:ENCSR000EVW,UCSC-ENCODE-hg19:wgEncodeEH001758,UCSC-ENCODE-hg19:wgEncodeEH003360;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=endothelial cell of umbilical vein;ENCODE_cell_slims=endothelial cell,epithelial cell;ENCODE_system_slims=reproductive system,circulatory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no system_category Embryo life_stage Newborn track_name ENCODE Endothelial cell (repl. 1) TF ChIP-seq GATA2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EVW] [Life stage: Newborn] [TF ChIP-seq peaks]
GATA2 • Endothelial cell NGENC2ZTCBCLOA • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Endothelial cell TF Show metadata Download track Track metadata identifier NGENC2ZTCBCLOA data_source ENCODE Download track Download number_of_intervals 20,542 bp_covered 8,373,962 output_type IDR thresholded peaks genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR000EVW biological_replicate 2 technical_replicate 2_1 antibody GATA2 assay TF ChIP-seq file_format bed narrowPeak file_size 347,633 downloaded_date 06/12/2022 release_date 02/12/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF298QIL.bed.gz processed_file_md5 5caf32310522645a02ff470dfa89a568 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF298QIL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF298QIL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF298QIL/@@download/ENCFF298QIL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF298QIL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d9eca1eda75330b084846a6bccd6a274 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM935347,FactorBook:ENCSR000EVW,UCSC-ENCODE-hg19:wgEncodeEH001758,UCSC-ENCODE-hg19:wgEncodeEH003360;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=endothelial cell of umbilical vein;ENCODE_cell_slims=endothelial cell,epithelial cell;ENCODE_system_slims=reproductive system,circulatory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no system_category Embryo life_stage Newborn track_name ENCODE Endothelial cell (repl. 2) TF ChIP-seq GATA2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EVW] [Life stage: Newborn] [TF ChIP-seq peaks]
GATA2 • K562 NGENC3WP4RACJP • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC3WP4RACJP data_source ENCODE Download track Download number_of_intervals 21,311 bp_covered 5,071,260 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000BKM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GATA2 assay TF ChIP-seq file_format bed narrowPeak file_size 389,464 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF544PCK.bed.gz processed_file_md5 cba8c488d96a4fcb60c92541b63d5479 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF544PCK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF544PCK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF544PCK/@@download/ENCFF544PCK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF544PCK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1557e1f950128425b10ba5034ee9e374 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSM803540,FactorBook:ENCSR000BKM,UCSC-ENCODE-hg19:wgEncodeEH001576;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GATA2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BKM] [Life stage: Adult] [TF ChIP-seq peaks]
GATA2 • K562 NGENC46EQOQ5ZQ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC46EQOQ5ZQ data_source ENCODE Download track Download number_of_intervals 3,221 bp_covered 888,544 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DKA biological_replicate 2 technical_replicate 2_1 antibody GATA2 assay TF ChIP-seq file_format bed narrowPeak file_size 62,471 downloaded_date 06/12/2022 release_date 01/06/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF812WIQ.bed.gz processed_file_md5 905678272d0732a70b17acf2e1934e2f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF812WIQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF812WIQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF812WIQ/@@download/ENCFF812WIQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF812WIQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a682d8d39a4c67b727639df3c5c1b049 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 stably expressing GATA2;Lab=Kevin White, UChicago;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001208,GEO:GSM777641,FactorBook:ENCSR000DKA;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-06-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq GATA2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DKA] [Life stage: Adult] [TF ChIP-seq peaks]
GATA2 • SH-SY5Y NGENC4LTIR25IZ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq SH-SY5Y TF Show metadata Download track Track metadata identifier NGENC4LTIR25IZ data_source ENCODE Download track Download number_of_intervals 31,370 bp_covered 11,223,805 output_type IDR thresholded peaks genome_build hg38 cell_type SH-SY5Y biosample_type Cell line biosample_term_id EFO:0002717 tissue_category Brain encode_experiment_id ENCSR000EYB biological_replicate 1 technical_replicate 1_1 antibody GATA2 assay TF ChIP-seq file_format bed narrowPeak file_size 543,513 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF935XCZ.bed.gz processed_file_md5 90fc1ecbf7eba61de990fb69833fdab5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF935XCZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF935XCZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF935XCZ/@@download/ENCFF935XCZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF935XCZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 01db6b59aab359fdbd98478f39fbd45e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens SH-SY5Y;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 4 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001770,GEO:GSM935589,FactorBook:ENCSR000EYB;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SH-SY5Y;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=skeletal system,immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002717;is_hg38_lifted=no system_category Nervous life_stage Child track_name ENCODE SH-SY5Y (repl. 1) TF ChIP-seq GATA2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EYB] [Life stage: Child] [TF ChIP-seq peaks]