Reference annotation (GR) NGHOMY4OKQUJGT • HOMER20513432 Motif finding Reference annotation (GR) TFBS Show metadata Download track Track metadata identifier NGHOMY4OKQUJGT data_source HOMER Download track Download number_of_intervals 563,063 bp_covered 8,671,946 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody GR assay Motif finding file_format bed bed6+5 Homer file_size 7,281,550 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/GRE_NR_IR3.hg38.processed.bed.gz processed_file_md5 dfd87f558f4bb37505f095bc1a54224d wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/GRE_NR_IR3.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/GRE_NR_IR3.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=GRE;DNA_binding_domain=NR,IR3;Cell_type=A549;Assay=ChIP-Seq;Origin=GSE32465;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding GR transcription factor binding sites (bed6+5 Homer) [TFBS]
GRHL1 • HepG2 NGENCDYEZYY365 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCDYEZYY365 data_source ENCODE Download track Download number_of_intervals 515 bp_covered 224,743 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR088LFR biological_replicate 1 technical_replicate 1_1 antibody GRHL1 assay TF ChIP-seq file_format bed narrowPeak file_size 10,777 downloaded_date 05/15/2024 release_date 07/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF503UVF.bed.gz processed_file_md5 44394570730f28c4c11024ee4548b9b9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF503UVF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF503UVF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF503UVF/@@download/ENCFF503UVF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF503UVF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 866a3b630a33fc75ca77fef4b73e5b01 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GRHL1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231055;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-15,2022-07-25;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq GRHL1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR088LFR] [Life stage: Child] [TF ChIP-seq peaks]
GRHL1 • HepG2 NGENCLGGK5HPON • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCLGGK5HPON data_source ENCODE Download track Download number_of_intervals 29 bp_covered 12,624 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR088LFR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GRHL1 assay TF ChIP-seq file_format bed narrowPeak file_size 740 downloaded_date 05/15/2024 release_date 07/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF738SWY.bed.gz processed_file_md5 d81763c314bd272d0214b2056bcad835 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF738SWY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF738SWY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF738SWY/@@download/ENCFF738SWY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF738SWY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3f580f1c234d2105cf62f5c043e8a721 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GRHL1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231055;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-15,2022-07-25;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq GRHL1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR088LFR] [Life stage: Child] [TF ChIP-seq peaks]
GRHL1 • HepG2 NGENCQTW6V2IXS • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCQTW6V2IXS data_source ENCODE Download track Download number_of_intervals 192 bp_covered 100,644 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR088LFR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GRHL1 assay TF ChIP-seq file_format bed narrowPeak file_size 4,276 downloaded_date 05/15/2024 release_date 07/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF965NMX.bed.gz processed_file_md5 60be1c380dd1f9cd499099183bba2eeb wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF965NMX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF965NMX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF965NMX/@@download/ENCFF965NMX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF965NMX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8964bbc113716a6e6253be193042bc36 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GRHL1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231055;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-15,2022-07-25;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq GRHL1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR088LFR] [Life stage: Child] [TF ChIP-seq peaks]
GRHL1 • HepG2 NGENCRYF4WF27D • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCRYF4WF27D data_source ENCODE Download track Download number_of_intervals 37 bp_covered 20,812 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR088LFR biological_replicate 2 technical_replicate 2_1 antibody GRHL1 assay TF ChIP-seq file_format bed narrowPeak file_size 911 downloaded_date 05/15/2024 release_date 07/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF276WQR.bed.gz processed_file_md5 a67737434867a80306d9c33c58d7a7f4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF276WQR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF276WQR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF276WQR/@@download/ENCFF276WQR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF276WQR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f6a2570e0f3b19f0f8ba519a12ae52b5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GRHL1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231055;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-15,2022-07-25;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq GRHL1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR088LFR] [Life stage: Child] [TF ChIP-seq peaks]
GRHL2 • WTC11 NGENCIZT4ZZRLU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCIZT4ZZRLU data_source ENCODE Download track Download number_of_intervals 18 bp_covered 5,677 output_type conservative IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR744RAS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GRHL2 assay TF ChIP-seq file_format bed narrowPeak file_size 537 downloaded_date 05/15/2024 release_date 04/02/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF756AKP.bed.gz processed_file_md5 7d633c0384a24d15e2de74e3899a7498 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF756AKP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF756AKP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF756AKP/@@download/ENCFF756AKP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF756AKP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 720537499e4716384b60725e7cc43ac7 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GRHL2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE230913;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-09-02,2021-05-31;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=fibroblast,stem cell,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC11,WTC-11;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) TF ChIP-seq GRHL2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR744RAS] [Life stage: Adult] [TF ChIP-seq peaks]
GRHL2 • WTC11 NGENCNZMXHBKIC • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCNZMXHBKIC data_source ENCODE Download track Download number_of_intervals 21 bp_covered 6,966 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR744RAS biological_replicate 1 technical_replicate 1_1 antibody GRHL2 assay TF ChIP-seq file_format bed narrowPeak file_size 589 downloaded_date 05/15/2024 release_date 04/02/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF690QZI.bed.gz processed_file_md5 7a93f3801cf413619d470723b628afe6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF690QZI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF690QZI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF690QZI/@@download/ENCFF690QZI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF690QZI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fdc6c187ba30671fe7a46ee3fe877dd3 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GRHL2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE230913;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-09-02,2021-05-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=fibroblast,stem cell,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC11,WTC-11;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1) TF ChIP-seq GRHL2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR744RAS] [Life stage: Adult] [TF ChIP-seq peaks]
GRHL2 • WTC11 NGENCSFYRBX6NW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCSFYRBX6NW data_source ENCODE Download track Download number_of_intervals 56 bp_covered 15,294 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR744RAS biological_replicate 2 technical_replicate 2_1 antibody GRHL2 assay TF ChIP-seq file_format bed narrowPeak file_size 1,235 downloaded_date 05/15/2024 release_date 04/02/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF745BUI.bed.gz processed_file_md5 38d7fa6ffbe3d9bd1666a60f8ca85cba wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF745BUI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF745BUI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF745BUI/@@download/ENCFF745BUI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF745BUI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a23b18d950c5329c192b4ff84a186df1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GRHL2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE230913;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-09-02,2021-05-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=fibroblast,stem cell,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC11,WTC-11;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 2) TF ChIP-seq GRHL2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR744RAS] [Life stage: Adult] [TF ChIP-seq peaks]
GRHL2 • WTC11 NGENCSZI6ABK4E • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCSZI6ABK4E data_source ENCODE Download track Download number_of_intervals 53 bp_covered 16,924 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR744RAS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GRHL2 assay TF ChIP-seq file_format bed narrowPeak file_size 1,258 downloaded_date 05/15/2024 release_date 04/02/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF105GQI.bed.gz processed_file_md5 99b47a095e4429a43c7edb0c2e63dd49 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF105GQI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF105GQI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF105GQI/@@download/ENCFF105GQI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF105GQI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3d634d0a2c90a2e58fc392ee45db9233 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GRHL2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE230913;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-09-02,2021-05-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=fibroblast,stem cell,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC11,WTC-11;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) TF ChIP-seq GRHL2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR744RAS] [Life stage: Adult] [TF ChIP-seq peaks]
Reference annotation (GRHL2) NGHOMCUA73O6JA • HOMER20513432 Motif finding Reference annotation (GRHL2) TFBS Show metadata Download track Track metadata identifier NGHOMCUA73O6JA data_source HOMER Download track Download number_of_intervals 805,672 bp_covered 16,113,440 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody GRHL2 assay Motif finding file_format bed bed6+5 Homer file_size 12,362,449 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/GRHL2_CP2.hg38.processed.bed.gz processed_file_md5 7e55652cc5c9b18361f1df7e99e41420 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/GRHL2_CP2.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/GRHL2_CP2.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=GRHL2;DNA_binding_domain=CP2;Cell_type=HBE;Assay=ChIP-Seq;Origin=GSE46194;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding GRHL2 transcription factor binding sites (bed6+5 Homer) [TFBS]
GRSF1 • HepG2 NGENC6ACCBEKSB • ENCODE22955616 | 41168159 | 31713622 eCLIP HepG2 RNA binding Show metadata Download track Track metadata identifier NGENC6ACCBEKSB data_source ENCODE Download track Download number_of_intervals 5,154 bp_covered 379,849 output_type peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR668MJX biological_replicate 2 technical_replicate 2_1 antibody GRSF1 assay eCLIP file_format bed narrowPeak file_size 101,245 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF683IWD.bed.gz processed_file_md5 29e92771964fd475a0b67ddb0cc4526a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF683IWD.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF683IWD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF683IWD/@@download/ENCFF683IWD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF683IWD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c58dd2153a5a30ac403ed4dcd5287d1c data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=RBPImage:GRSF1,GEO:GSE91972;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-04-26;Submitted_track_name=596_02.basedon_596_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) eCLIP GRSF1 peaks (narrowPeak) [Experiment: ENCSR668MJX] [Life stage: Child] [RNA binding]
GRSF1 • HepG2 NGENCY3SGHI73J • ENCODE22955616 | 41168159 | 31713622 eCLIP HepG2 RNA binding Show metadata Download track Track metadata identifier NGENCY3SGHI73J data_source ENCODE Download track Download number_of_intervals 3,257 bp_covered 218,191 output_type peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR668MJX biological_replicate 1 technical_replicate 1_1 antibody GRSF1 assay eCLIP file_format bed narrowPeak file_size 66,354 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF632PGX.bed.gz processed_file_md5 322dcb328a389a827d29efa7243a9170 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF632PGX.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF632PGX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF632PGX/@@download/ENCFF632PGX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF632PGX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1b83c1870aeb773e06249f539e411326 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=RBPImage:GRSF1,GEO:GSE91972;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-04-26;Submitted_track_name=596_01.basedon_596_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) eCLIP GRSF1 peaks (narrowPeak) [Experiment: ENCSR668MJX] [Life stage: Child] [RNA binding]
GRWD1 • K562 NGENC6KF4AVTB2 • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENC6KF4AVTB2 data_source ENCODE Download track Download number_of_intervals 28,322 bp_covered 1,760,949 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR999YGP biological_replicate 2 technical_replicate 2_1 antibody GRWD1 assay eCLIP file_format bed narrowPeak file_size 578,169 downloaded_date 06/10/2020 release_date 04/29/2018 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF315NPJ.bed.gz processed_file_md5 4ed3942456521a38b66f1acbacac53dc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF315NPJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF315NPJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF315NPJ/@@download/ENCFF315NPJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF315NPJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f459162de8199bd027bf60b6aea9dc62 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE178068;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2018-08-30;Submitted_track_name=645_02.basedon_645_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) eCLIP GRWD1 peaks (narrowPeak) [Experiment: ENCSR999YGP] [Life stage: Adult] [RNA binding]
GRWD1 • HepG2 NGENCGC4JMBQNM • ENCODE22955616 | 41168159 | 31713622 eCLIP HepG2 RNA binding Show metadata Download track Track metadata identifier NGENCGC4JMBQNM data_source ENCODE Download track Download number_of_intervals 89,140 bp_covered 5,044,470 output_type peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR893NWB biological_replicate 1 technical_replicate 1_1 antibody GRWD1 assay eCLIP file_format bed narrowPeak file_size 1,757,471 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF964TTL.bed.gz processed_file_md5 999ece76ff9227bb18fbd1e59ecbdd5c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF964TTL.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF964TTL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF964TTL/@@download/ENCFF964TTL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF964TTL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 db06e9b75733f416d46f2ccc20dce4b3 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=GEO:GSE92142,RBPImage:GRWD1;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-04-26;Submitted_track_name=628_01.basedon_628_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) eCLIP GRWD1 peaks (narrowPeak) [Experiment: ENCSR893NWB] [Life stage: Child] [RNA binding]
GRWD1 • K562 NGENCOMQ6SZTNS • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCOMQ6SZTNS data_source ENCODE Download track Download number_of_intervals 27,132 bp_covered 1,792,182 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR999YGP biological_replicate 1 technical_replicate 1_1 antibody GRWD1 assay eCLIP file_format bed narrowPeak file_size 525,284 downloaded_date 06/10/2020 release_date 04/29/2018 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF598OCW.bed.gz processed_file_md5 a3631b6d28388550e713ddfdd31e6caa wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF598OCW.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF598OCW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF598OCW/@@download/ENCFF598OCW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF598OCW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5e3764ad5b414eccf850b52b7990c515 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE178068;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2018-08-30;Submitted_track_name=645_01.basedon_645_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) eCLIP GRWD1 peaks (narrowPeak) [Experiment: ENCSR999YGP] [Life stage: Adult] [RNA binding]
GRWD1 • HepG2 NGENCUAYLYX7QV • ENCODE22955616 | 41168159 | 31713622 eCLIP HepG2 RNA binding Show metadata Download track Track metadata identifier NGENCUAYLYX7QV data_source ENCODE Download track Download number_of_intervals 84,347 bp_covered 4,813,851 output_type peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR893NWB biological_replicate 2 technical_replicate 2_1 antibody GRWD1 assay eCLIP file_format bed narrowPeak file_size 1,638,099 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF429WEY.bed.gz processed_file_md5 eb5a9f3a9c95c1a2964c2baf298c8f13 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF429WEY.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF429WEY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF429WEY/@@download/ENCFF429WEY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF429WEY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 31fd7007a68726e97101baea14dca7ff data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=GEO:GSE92142,RBPImage:GRWD1;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-04-26;Submitted_track_name=628_02.basedon_628_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) eCLIP GRWD1 peaks (narrowPeak) [Experiment: ENCSR893NWB] [Life stage: Child] [RNA binding]
Reference annotation (GSC) NGHOMFRRXIY4LX • HOMER20513432 Motif finding Reference annotation (GSC) TFBS Show metadata Download track Track metadata identifier NGHOMFRRXIY4LX data_source HOMER Download track Download number_of_intervals 3,776,484 bp_covered 30,211,872 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody GSC assay Motif finding file_format bed bed6+5 Homer file_size 32,827,924 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/GSC_Homeobox.hg38.processed.bed.gz processed_file_md5 b00a863ef9a4f82bbdb7a01cb1fe5192 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/GSC_Homeobox.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/GSC_Homeobox.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=GSC;DNA_binding_domain=Homeobox;Cell_type=FrogEmbryos;Assay=ChIP-Seq;Origin=DRA000576;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding GSC transcription factor binding sites (bed6+5 Homer) [TFBS]
GTF2A2 • K562 NGENC7MFKEO53Q • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC7MFKEO53Q data_source ENCODE Download track Download number_of_intervals 5,617 bp_covered 3,276,205 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR801RPW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2A2 assay TF ChIP-seq file_format bed narrowPeak file_size 113,116 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF041WRN.bed.gz processed_file_md5 c43a09a89630c050893be0da00cce1e8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF041WRN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF041WRN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF041WRN/@@download/ENCFF041WRN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF041WRN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 70aa5291fd2cb8012bcb18895ebd9fa5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 stably expressing GTF2A2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE92066;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-08-24,2016-08-03;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GTF2A2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR801RPW] [Life stage: Adult] [TF ChIP-seq peaks]
GTF2A2 • K562 NGENCKEPSRVGLR • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCKEPSRVGLR data_source ENCODE Download track Download number_of_intervals 5,435 bp_covered 3,165,219 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR801RPW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2A2 assay TF ChIP-seq file_format bed narrowPeak file_size 109,710 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF560BQU.bed.gz processed_file_md5 d1efb41fb7df8efe94d991ce6b713c15 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF560BQU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF560BQU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF560BQU/@@download/ENCFF560BQU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF560BQU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c75f414c14f4e177abbdc8cb564899b0 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 stably expressing GTF2A2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE92066;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-08-24,2016-08-03;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GTF2A2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR801RPW] [Life stage: Adult] [TF ChIP-seq peaks]
GTF2A2 • K562 NGENCRWIKLX6IO • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCRWIKLX6IO data_source ENCODE Download track Download number_of_intervals 2,853 bp_covered 1,458,366 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR801RPW biological_replicate 2 technical_replicate 2_1 antibody GTF2A2 assay TF ChIP-seq file_format bed narrowPeak file_size 56,392 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF306QZU.bed.gz processed_file_md5 a23a801a41c47ce14807e7c853b28035 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF306QZU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF306QZU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF306QZU/@@download/ENCFF306QZU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF306QZU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d10a5bb3410eeddb92304faaa95eb9c5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 stably expressing GTF2A2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE92066;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-08-24,2016-08-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq GTF2A2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR801RPW] [Life stage: Adult] [TF ChIP-seq peaks]