GTF2A2 • K562 NGENCRYSXTUL42 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCRYSXTUL42 data_source ENCODE Download track Download number_of_intervals 3,450 bp_covered 1,870,961 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR801RPW biological_replicate 1 technical_replicate 1_1 antibody GTF2A2 assay TF ChIP-seq file_format bed narrowPeak file_size 68,569 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF652KEZ.bed.gz processed_file_md5 2a4234716e3f5cf3146b2529e289f483 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF652KEZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF652KEZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF652KEZ/@@download/ENCFF652KEZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF652KEZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 24a88b4fff918f1c62a8a26f03c2db7f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 stably expressing GTF2A2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE92066;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-08-24,2016-08-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq GTF2A2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR801RPW] [Life stage: Adult] [TF ChIP-seq peaks]
GTF2A2 • K562 NGFTB4FKXU3KXH • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB4FKXU3KXH data_source Factorbook Download track Download number_of_intervals 1,415 bp_covered 21,225 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR801RPW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2A2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 20,772 downloaded_date 07/10/2024 release_date 08/24/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF920CRL_GTYGCTCTGGTTCAA_sorted.bed.gz processed_file_md5 f773dbfa0d384d6ae9c19b571f0809c6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF920CRL_GTYGCTCTGGTTCAA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF920CRL_GTYGCTCTGGTTCAA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF920CRL_GTYGCTCTGGTTCAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF920CRL_GTYGCTCTGGTTCAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b8a79f59a14e18a4ab5d1d9846cf86ba data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing GTF2A2;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF920CRL;ENCODE_bigBed_id=ENCFF041WRN;PMID=34755879;Motif_sequence=GTYGCTCTGGTTCAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2A2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR801RPW] [Life stage: Adult] [TFBS]
GTF2A2 • K562 NGFTBC7FGAYZ5U • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBC7FGAYZ5U data_source Factorbook Download track Download number_of_intervals 143 bp_covered 2,145 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR801RPW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2A2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,493 downloaded_date 07/10/2024 release_date 08/24/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF920CRL_GTYGCTCTGGTTCAA_filtered.bed.gz processed_file_md5 b9b0eb872f9baf26eb699956868ffe0a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF920CRL_GTYGCTCTGGTTCAA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF920CRL_GTYGCTCTGGTTCAA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF920CRL_GTYGCTCTGGTTCAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF920CRL_GTYGCTCTGGTTCAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b8a79f59a14e18a4ab5d1d9846cf86ba data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing GTF2A2;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF920CRL;ENCODE_bigBed_id=ENCFF041WRN;PMID=34755879;Motif_sequence=GTYGCTCTGGTTCAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2A2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR801RPW] [Life stage: Adult] [TFBS]
GTF2A2 • K562 NGFTBNSMWQCHC7 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBNSMWQCHC7 data_source Factorbook Download track Download number_of_intervals 1,410 bp_covered 15,510 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR801RPW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2A2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 18,463 downloaded_date 07/10/2024 release_date 08/24/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF920CRL_TGTCAGAGGCR_sorted.bed.gz processed_file_md5 65018a21380548f4c104d7147abef3f6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF920CRL_TGTCAGAGGCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF920CRL_TGTCAGAGGCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF920CRL_TGTCAGAGGCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF920CRL_TGTCAGAGGCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 0d87114e58a4b58e7ebe3eb5c5e35355 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing GTF2A2;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF920CRL;ENCODE_bigBed_id=ENCFF041WRN;PMID=34755879;Motif_sequence=TGTCAGAGGCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2A2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR801RPW] [Life stage: Adult] [TFBS]
GTF2A2 • K562 NGFTBOEBYBSLPO • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBOEBYBSLPO data_source Factorbook Download track Download number_of_intervals 631 bp_covered 17,037 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR801RPW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2A2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 8,825 downloaded_date 07/10/2024 release_date 08/24/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF920CRL_TTTTACCCAGCCCCTATTCAAGATGGA_filtered.bed.gz processed_file_md5 f1d87736d220bc781529b2211caf6958 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF920CRL_TTTTACCCAGCCCCTATTCAAGATGGA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF920CRL_TTTTACCCAGCCCCTATTCAAGATGGA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF920CRL_TTTTACCCAGCCCCTATTCAAGATGGA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF920CRL_TTTTACCCAGCCCCTATTCAAGATGGA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 be19c5b6407f6d54704fd4171e1d26d3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing GTF2A2;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF920CRL;ENCODE_bigBed_id=ENCFF041WRN;PMID=34755879;Motif_sequence=TTTTACCCAGCCCCTATTCAAGATGGA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2A2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR801RPW] [Life stage: Adult] [TFBS]
GTF2A2 • K562 NGFTBUGKHYR3F2 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBUGKHYR3F2 data_source Factorbook Download track Download number_of_intervals 2,253 bp_covered 49,566 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR801RPW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2A2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 37,673 downloaded_date 07/10/2024 release_date 08/24/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF920CRL_ABCAARATGGAGTCASTYAKGY_sorted.bed.gz processed_file_md5 cee7c2712880a103ebe611744d8c2257 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF920CRL_ABCAARATGGAGTCASTYAKGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF920CRL_ABCAARATGGAGTCASTYAKGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF920CRL_ABCAARATGGAGTCASTYAKGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF920CRL_ABCAARATGGAGTCASTYAKGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7518d7f0ef920c9078f5beedf4121627 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing GTF2A2;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF920CRL;ENCODE_bigBed_id=ENCFF041WRN;PMID=34755879;Motif_sequence=ABCAARATGGAGTCASTYAKGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2A2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR801RPW] [Life stage: Adult] [TFBS]
GTF2A2 • K562 NGFTBVNXSYEMRZ • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBVNXSYEMRZ data_source Factorbook Download track Download number_of_intervals 1,055 bp_covered 23,210 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR801RPW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2A2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 13,228 downloaded_date 07/10/2024 release_date 08/24/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF920CRL_ABCAARATGGAGTCASTYAKGY_filtered.bed.gz processed_file_md5 8effeda2e791752d1b6817666fd36b18 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF920CRL_ABCAARATGGAGTCASTYAKGY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF920CRL_ABCAARATGGAGTCASTYAKGY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF920CRL_ABCAARATGGAGTCASTYAKGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF920CRL_ABCAARATGGAGTCASTYAKGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7518d7f0ef920c9078f5beedf4121627 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing GTF2A2;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF920CRL;ENCODE_bigBed_id=ENCFF041WRN;PMID=34755879;Motif_sequence=ABCAARATGGAGTCASTYAKGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2A2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR801RPW] [Life stage: Adult] [TFBS]
GTF2A2 • K562 NGFTBXZWAQKUW5 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBXZWAQKUW5 data_source Factorbook Download track Download number_of_intervals 1,537 bp_covered 41,499 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR801RPW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2A2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 28,441 downloaded_date 07/10/2024 release_date 08/24/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF920CRL_TTTTACCCAGCCCCTATTCAAGATGGA_sorted.bed.gz processed_file_md5 b50de1bb081d9a25c41fb7d7f6d08dfe wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF920CRL_TTTTACCCAGCCCCTATTCAAGATGGA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF920CRL_TTTTACCCAGCCCCTATTCAAGATGGA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF920CRL_TTTTACCCAGCCCCTATTCAAGATGGA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF920CRL_TTTTACCCAGCCCCTATTCAAGATGGA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 be19c5b6407f6d54704fd4171e1d26d3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing GTF2A2;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF920CRL;ENCODE_bigBed_id=ENCFF041WRN;PMID=34755879;Motif_sequence=TTTTACCCAGCCCCTATTCAAGATGGA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2A2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR801RPW] [Life stage: Adult] [TFBS]
GTF2B • K562 NGENC6A5LBLSZI • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC6A5LBLSZI data_source ENCODE Download track Download number_of_intervals 449 bp_covered 112,148 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOE biological_replicate 1 technical_replicate 1_1 antibody GTF2B assay TF ChIP-seq file_format bed narrowPeak file_size 8,040 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF818MRY.bed.gz processed_file_md5 6d4951a3d5c916eca6c517cd0e08e624 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF818MRY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF818MRY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF818MRY/@@download/ENCFF818MRY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF818MRY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 da31567e9eb2099175cfb7960571ddfe data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000DOE,UCSC-ENCODE-hg19:wgEncodeEH000703,GEO:GSM935394;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq GTF2B IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOE] [Life stage: Adult] [TF ChIP-seq peaks]
GTF2B • K562 NGENCGF666VNY3 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCGF666VNY3 data_source ENCODE Download track Download number_of_intervals 1,919 bp_covered 582,573 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2B assay TF ChIP-seq file_format bed narrowPeak file_size 34,760 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF716QMI.bed.gz processed_file_md5 7b513592f2d06e1622241263715a2436 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF716QMI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF716QMI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF716QMI/@@download/ENCFF716QMI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF716QMI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9f92ba15fc8a19c35b38da37aabf5d79 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000DOE,UCSC-ENCODE-hg19:wgEncodeEH000703,GEO:GSM935394;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GTF2B IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOE] [Life stage: Adult] [TF ChIP-seq peaks]
GTF2B • K562 NGENCJV4FOIUDJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCJV4FOIUDJ data_source ENCODE Download track Download number_of_intervals 1,873 bp_covered 568,085 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2B assay TF ChIP-seq file_format bed narrowPeak file_size 34,061 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF686FYA.bed.gz processed_file_md5 4c4ccfdbecddf09c787127f2d3269f63 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF686FYA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF686FYA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF686FYA/@@download/ENCFF686FYA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF686FYA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 95ff6402fcfc36115f9139d4e427b285 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000DOE,UCSC-ENCODE-hg19:wgEncodeEH000703,GEO:GSM935394;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GTF2B conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOE] [Life stage: Adult] [TF ChIP-seq peaks]
GTF2B • K562 NGENCOJEQ37JHZ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCOJEQ37JHZ data_source ENCODE Download track Download number_of_intervals 584 bp_covered 192,609 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOE biological_replicate 2 technical_replicate 2_1 antibody GTF2B assay TF ChIP-seq file_format bed narrowPeak file_size 10,511 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF504LGT.bed.gz processed_file_md5 7532eea29a459c331bb3610279a43d20 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF504LGT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF504LGT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF504LGT/@@download/ENCFF504LGT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF504LGT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d3199e9d1b7bda050c7943eb18c075a7 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000DOE,UCSC-ENCODE-hg19:wgEncodeEH000703,GEO:GSM935394;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq GTF2B IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOE] [Life stage: Adult] [TF ChIP-seq peaks]
GTF2B • K562 NGFTBGPAYR24OL • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBGPAYR24OL data_source Factorbook Download track Download number_of_intervals 245 bp_covered 3,675 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2B assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,744 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF987FJR_VVSSBSCTTTTATAG_sorted.bed.gz processed_file_md5 643adf88bc94824f9ca34924eac81510 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF987FJR_VVSSBSCTTTTATAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF987FJR_VVSSBSCTTTTATAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF987FJR_VVSSBSCTTTTATAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF987FJR_VVSSBSCTTTTATAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 71000fd9af7aa467abef4ff9ef3f227e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Kevin Struhl, HMS;System=immune system;ENCODE_BED_id=ENCFF987FJR;ENCODE_bigBed_id=ENCFF716QMI;PMID=34755879;Motif_sequence=VVSSBSCTTTTATAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2B transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DOE] [Life stage: Adult] [TFBS]
GTF2E2 • K562 NGENCL6UU7V3C6 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCL6UU7V3C6 data_source ENCODE Download track Download number_of_intervals 12,479 bp_covered 12,055,019 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR532KTI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2E2 assay TF ChIP-seq file_format bed narrowPeak file_size 247,671 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF015XVL.bed.gz processed_file_md5 0a2ea303d354faad9cfb67a0c0fef337 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF015XVL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF015XVL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF015XVL/@@download/ENCFF015XVL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF015XVL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e22f3442a0275e010d226e69a1022335 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 stably expressing GTF2E2;Lab=Kevin White, UChicago;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE105643;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-06-13,2016-05-18;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GTF2E2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR532KTI] [Life stage: Adult] [TF ChIP-seq peaks]
GTF2E2 • K562 NGENCN63IWQ472 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCN63IWQ472 data_source ENCODE Download track Download number_of_intervals 16,064 bp_covered 15,533,861 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR532KTI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2E2 assay TF ChIP-seq file_format bed narrowPeak file_size 317,471 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF741URT.bed.gz processed_file_md5 4e1fbcff2c285c6761dcc3abaa526c7b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF741URT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF741URT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF741URT/@@download/ENCFF741URT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF741URT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5a2527aab5a5d7718020ac4e047b632d data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 stably expressing GTF2E2;Lab=Kevin White, UChicago;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE105643;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-06-13,2016-05-18;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GTF2E2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR532KTI] [Life stage: Adult] [TF ChIP-seq peaks]
GTF2E2 • K562 NGENCNKGRDFFGV • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCNKGRDFFGV data_source ENCODE Download track Download number_of_intervals 12,016 bp_covered 11,975,594 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR532KTI biological_replicate 2 technical_replicate 2_1 antibody GTF2E2 assay TF ChIP-seq file_format bed narrowPeak file_size 231,686 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF557GOQ.bed.gz processed_file_md5 9800dc7bab12ae1d6017f2237ee48c9d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF557GOQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF557GOQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF557GOQ/@@download/ENCFF557GOQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF557GOQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c380dd7d5d2dad5383bcdba9f58c9227 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 stably expressing GTF2E2;Lab=Kevin White, UChicago;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE105643;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-06-13,2016-05-18;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq GTF2E2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR532KTI] [Life stage: Adult] [TF ChIP-seq peaks]
GTF2E2 • K562 NGENCPCB2QPO6F • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCPCB2QPO6F data_source ENCODE Download track Download number_of_intervals 7,237 bp_covered 6,626,335 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR532KTI biological_replicate 1 technical_replicate 1_1 antibody GTF2E2 assay TF ChIP-seq file_format bed narrowPeak file_size 144,120 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF550URN.bed.gz processed_file_md5 9f7ef4e985da775f7757e1b63f37661e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF550URN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF550URN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF550URN/@@download/ENCFF550URN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF550URN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9cf497c8932bb93a7e42ceb605695ecd data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 stably expressing GTF2E2;Lab=Kevin White, UChicago;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE105643;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-06-13,2016-05-18;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq GTF2E2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR532KTI] [Life stage: Adult] [TF ChIP-seq peaks]
GTF2E2 • K562 NGFTBFVR6D5ZPR • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBFVR6D5ZPR data_source Factorbook Download track Download number_of_intervals 101 bp_covered 2,121 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR532KTI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2E2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,317 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF564KIU_GGKTMAAATRASKCTGASACC_filtered.bed.gz processed_file_md5 a2fd965e277c1a0eda30d34497f57baa wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF564KIU_GGKTMAAATRASKCTGASACC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF564KIU_GGKTMAAATRASKCTGASACC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF564KIU_GGKTMAAATRASKCTGASACC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF564KIU_GGKTMAAATRASKCTGASACC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 13d7872fb0a9e18c8fdb6a0f932d8799 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing GTF2E2;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF564KIU;ENCODE_bigBed_id=ENCFF741URT;PMID=34755879;Motif_sequence=GGKTMAAATRASKCTGASACC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2E2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR532KTI] [Life stage: Adult] [TFBS]
GTF2E2 • K562 NGFTBKBUV7SHZI • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBKBUV7SHZI data_source Factorbook Download track Download number_of_intervals 201 bp_covered 5,829 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR532KTI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2E2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,871 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF564KIU_ARBMYYTATTCAAKATGGAGTBACTCYRG_filtered.bed.gz processed_file_md5 e437d318da52f8310b33650bbf8c82b8 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF564KIU_ARBMYYTATTCAAKATGGAGTBACTCYRG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF564KIU_ARBMYYTATTCAAKATGGAGTBACTCYRG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF564KIU_ARBMYYTATTCAAKATGGAGTBACTCYRG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF564KIU_ARBMYYTATTCAAKATGGAGTBACTCYRG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 51ec272c41ca2e541ebfcb1de58c5ca6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing GTF2E2;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF564KIU;ENCODE_bigBed_id=ENCFF741URT;PMID=34755879;Motif_sequence=ARBMYYTATTCAAKATGGAGTBACTCYRG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2E2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR532KTI] [Life stage: Adult] [TFBS]
GTF2E2 • K562 NGFTBOVAYBI2W3 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBOVAYBI2W3 data_source Factorbook Download track Download number_of_intervals 2,904 bp_covered 84,216 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR532KTI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2E2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 55,011 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF564KIU_ARBMYYTATTCAAKATGGAGTBACTCYRG_sorted.bed.gz processed_file_md5 327ffbf4eb2b393fc1b257f5dc05de63 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF564KIU_ARBMYYTATTCAAKATGGAGTBACTCYRG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF564KIU_ARBMYYTATTCAAKATGGAGTBACTCYRG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF564KIU_ARBMYYTATTCAAKATGGAGTBACTCYRG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF564KIU_ARBMYYTATTCAAKATGGAGTBACTCYRG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 51ec272c41ca2e541ebfcb1de58c5ca6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing GTF2E2;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF564KIU;ENCODE_bigBed_id=ENCFF741URT;PMID=34755879;Motif_sequence=ARBMYYTATTCAAKATGGAGTBACTCYRG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2E2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR532KTI] [Life stage: Adult] [TFBS]