GTF2F1 • K562 NGFTB4ORQDDCWO • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB4ORQDDCWO data_source Factorbook Download track Download number_of_intervals 37,632 bp_covered 1,128,960 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR189VXS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 568,129 downloaded_date 07/10/2024 release_date 01/30/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF837ZJJ_CASMCMCAYACRCMYMMMCMYWYACACRCA_sorted.bed.gz processed_file_md5 14d1e274e702279f74bb4a0014682e69 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF837ZJJ_CASMCMCAYACRCMYMMMCMYWYACACRCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF837ZJJ_CASMCMCAYACRCMYMMMCMYWYACACRCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF837ZJJ_CASMCMCAYACRCMYMMMCMYWYACACRCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF837ZJJ_CASMCMCAYACRCMYMMMCMYWYACACRCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 46025bbfbb37ce614be0aa86961901ba data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF837ZJJ;ENCODE_bigBed_id=ENCFF485ALN;PMID=34755879;Motif_sequence=CASMCMCAYACRCMYMMMCMYWYACACRCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR189VXS] [Life stage: Adult] [TFBS]
GTF2F1 • HeLa-S3 NGFTB55NXSMUGN • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTB55NXSMUGN data_source Factorbook Download track Download number_of_intervals 5,263 bp_covered 42,104 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000ECZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 55,867 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF855OKP_CTGAGTCA_sorted.bed.gz processed_file_md5 d20e5d5b564fe4c8ce7f73c4b1561728 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF855OKP_CTGAGTCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF855OKP_CTGAGTCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF855OKP_CTGAGTCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF855OKP_CTGAGTCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 581b945578bd12f0a662356a95abec4c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF855OKP;ENCODE_bigBed_id=ENCFF868VGE;PMID=34755879;Motif_sequence=CTGAGTCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000ECZ] [Life stage: Adult] [TFBS]
GTF2F1 • HepG2 NGFTB7PJWDZMKG • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB7PJWDZMKG data_source Factorbook Download track Download number_of_intervals 275 bp_covered 3,025 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR382PVA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,170 downloaded_date 07/10/2024 release_date 02/27/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF361ZLP_CTATAWAAGGG_sorted.bed.gz processed_file_md5 42e9f47e2be8418e6234108ebb6412e1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF361ZLP_CTATAWAAGGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF361ZLP_CTATAWAAGGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF361ZLP_CTATAWAAGGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF361ZLP_CTATAWAAGGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1a20113a80823a8ea720d4def38cd35f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Xiang-Dong Fu, UCSD;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF361ZLP;ENCODE_bigBed_id=ENCFF033HQM;PMID=34755879;Motif_sequence=CTATAWAAGGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR382PVA] [Life stage: Child] [TFBS]
GTF2F1 • K562 NGFTBAROLNX5TY • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBAROLNX5TY data_source Factorbook Download track Download number_of_intervals 7,597 bp_covered 227,910 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR189VXS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 99,536 downloaded_date 07/10/2024 release_date 01/30/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF837ZJJ_CASMCMCAYACRCMYMMMCMYWYACACRCA_filtered.bed.gz processed_file_md5 b0a1e08c9b62e3700154c8c99bb39ef9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF837ZJJ_CASMCMCAYACRCMYMMMCMYWYACACRCA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF837ZJJ_CASMCMCAYACRCMYMMMCMYWYACACRCA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF837ZJJ_CASMCMCAYACRCMYMMMCMYWYACACRCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF837ZJJ_CASMCMCAYACRCMYMMMCMYWYACACRCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 46025bbfbb37ce614be0aa86961901ba data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF837ZJJ;ENCODE_bigBed_id=ENCFF485ALN;PMID=34755879;Motif_sequence=CASMCMCAYACRCMYMMMCMYWYACACRCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR189VXS] [Life stage: Adult] [TFBS]
GTF2F1 • H1-hESC NGFTBBSHXD3PWG • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTBBSHXD3PWG data_source Factorbook Download track Download number_of_intervals 981 bp_covered 14,715 output_type transcription factor binding sites all genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000EBP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 17,488 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF138MYA_SSGKGTCACGTGACS_sorted.bed.gz processed_file_md5 36d20742c3620ee819487a67ff5df4f9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF138MYA_SSGKGTCACGTGACS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF138MYA_SSGKGTCACGTGACS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF138MYA_SSGKGTCACGTGACS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF138MYA_SSGKGTCACGTGACS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 28e5d4c3be6bae671e165636813f3a1d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF138MYA;ENCODE_bigBed_id=ENCFF399TGL;PMID=34755879;Motif_sequence=SSGKGTCACGTGACS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EBP] [TFBS]
GTF2F1 • HepG2 NGFTBELDDRRGQS • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBELDDRRGQS data_source Factorbook Download track Download number_of_intervals 896 bp_covered 13,440 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR219NRT biological_replicate 2, 3 technical_replicate 2_1, 3_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 15,855 downloaded_date 07/10/2024 release_date 07/07/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF926ROG_SBSGGGTCACGTGAC_sorted.bed.gz processed_file_md5 962e79bfaf237f6285c1bfa3ae444b6c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF926ROG_SBSGGGTCACGTGAC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF926ROG_SBSGGGTCACGTGAC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF926ROG_SBSGGGTCACGTGAC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF926ROG_SBSGGGTCACGTGAC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 902ed1d192d03620c026947c5190207c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF926ROG;ENCODE_bigBed_id=ENCFF486CCX;PMID=34755879;Motif_sequence=SBSGGGTCACGTGAC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 2, 3) Motif finding GTF2F1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR219NRT] [Life stage: Child] [TFBS]
GTF2F1 • K562 NGFTBETAWK75YW • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBETAWK75YW data_source Factorbook Download track Download number_of_intervals 4,790 bp_covered 57,480 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR189VXS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 71,087 downloaded_date 07/10/2024 release_date 01/30/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF837ZJJ_CAARATGGCGGC_sorted.bed.gz processed_file_md5 6886bba719b3322684688489effa4a26 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF837ZJJ_CAARATGGCGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF837ZJJ_CAARATGGCGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF837ZJJ_CAARATGGCGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF837ZJJ_CAARATGGCGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1078f28df7973c131b78e9c0ebc8ee58 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF837ZJJ;ENCODE_bigBed_id=ENCFF485ALN;PMID=34755879;Motif_sequence=CAARATGGCGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR189VXS] [Life stage: Adult] [TFBS]
GTF2F1 • HepG2 NGFTBGNTTGQIE2 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBGNTTGQIE2 data_source Factorbook Download track Download number_of_intervals 10 bp_covered 210 output_type transcription factor binding sites significant genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR382PVA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 569 downloaded_date 07/10/2024 release_date 02/27/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF361ZLP_GCCCNNHNYCAAVATGGCGGC_filtered.bed.gz processed_file_md5 beca0dd68fcb82060b4c52661556e96c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF361ZLP_GCCCNNHNYCAAVATGGCGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF361ZLP_GCCCNNHNYCAAVATGGCGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF361ZLP_GCCCNNHNYCAAVATGGCGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF361ZLP_GCCCNNHNYCAAVATGGCGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c36c7bfa2b5e7bc2979b73b9f3bcb431 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Xiang-Dong Fu, UCSD;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF361ZLP;ENCODE_bigBed_id=ENCFF033HQM;PMID=34755879;Motif_sequence=GCCCNNHNYCAAVATGGCGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR382PVA] [Life stage: Child] [TFBS]
GTF2F1 • HepG2 NGFTBN6RSUHP6T • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBN6RSUHP6T data_source Factorbook Download track Download number_of_intervals 1,444 bp_covered 30,324 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR382PVA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 29,584 downloaded_date 07/10/2024 release_date 02/27/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF361ZLP_GCCCNNHNYCAAVATGGCGGC_sorted.bed.gz processed_file_md5 19dd4be44c4be7d6f34532d30955428b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF361ZLP_GCCCNNHNYCAAVATGGCGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF361ZLP_GCCCNNHNYCAAVATGGCGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF361ZLP_GCCCNNHNYCAAVATGGCGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF361ZLP_GCCCNNHNYCAAVATGGCGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c36c7bfa2b5e7bc2979b73b9f3bcb431 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Xiang-Dong Fu, UCSD;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF361ZLP;ENCODE_bigBed_id=ENCFF033HQM;PMID=34755879;Motif_sequence=GCCCNNHNYCAAVATGGCGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR382PVA] [Life stage: Child] [TFBS]
GTF2F1 • HepG2 NGFTBNN4PSQAUA • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBNN4PSQAUA data_source Factorbook Download track Download number_of_intervals 846 bp_covered 11,844 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR382PVA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 13,974 downloaded_date 07/10/2024 release_date 02/27/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF361ZLP_TCTCGCGAGATYTS_sorted.bed.gz processed_file_md5 b457874ae518703d9c1175b4a52459fd wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF361ZLP_TCTCGCGAGATYTS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF361ZLP_TCTCGCGAGATYTS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF361ZLP_TCTCGCGAGATYTS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF361ZLP_TCTCGCGAGATYTS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 921de7c0f5585f6801c5f55483198bc9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Xiang-Dong Fu, UCSD;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF361ZLP;ENCODE_bigBed_id=ENCFF033HQM;PMID=34755879;Motif_sequence=TCTCGCGAGATYTS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR382PVA] [Life stage: Child] [TFBS]
GTF2F1 • K562 NGFTBOAULMRLEM • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBOAULMRLEM data_source Factorbook Download track Download number_of_intervals 12 bp_covered 216 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR377BLZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 537 downloaded_date 07/10/2024 release_date 01/16/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF225ZPU_BSGSSGCCGCCATYTTGR_filtered.bed.gz processed_file_md5 73d5463619126ba430a7c712bdbfcc8a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF225ZPU_BSGSSGCCGCCATYTTGR_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF225ZPU_BSGSSGCCGCCATYTTGR_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF225ZPU_BSGSSGCCGCCATYTTGR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF225ZPU_BSGSSGCCGCCATYTTGR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bada91ce540000c49eb0ac88ba153d8c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Xiang-Dong Fu, UCSD;System=immune system;ENCODE_BED_id=ENCFF225ZPU;ENCODE_bigBed_id=ENCFF940JZP;PMID=34755879;Motif_sequence=BSGSSGCCGCCATYTTGR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR377BLZ] [Life stage: Adult] [TFBS]
GTF2F1 • K562 NGFTBRE3X5JGOK • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBRE3X5JGOK data_source Factorbook Download track Download number_of_intervals 21 bp_covered 630 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR377BLZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 736 downloaded_date 07/10/2024 release_date 01/16/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF225ZPU_ASGTAAGTATGAGYTCWYGCMCCTCCGCCC_filtered.bed.gz processed_file_md5 22eb000860742e5539af8994fae99dd9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF225ZPU_ASGTAAGTATGAGYTCWYGCMCCTCCGCCC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF225ZPU_ASGTAAGTATGAGYTCWYGCMCCTCCGCCC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF225ZPU_ASGTAAGTATGAGYTCWYGCMCCTCCGCCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF225ZPU_ASGTAAGTATGAGYTCWYGCMCCTCCGCCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 365e2afb785fb98fe4a7b4d213dd6121 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Xiang-Dong Fu, UCSD;System=immune system;ENCODE_BED_id=ENCFF225ZPU;ENCODE_bigBed_id=ENCFF940JZP;PMID=34755879;Motif_sequence=ASGTAAGTATGAGYTCWYGCMCCTCCGCCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR377BLZ] [Life stage: Adult] [TFBS]
GTF2F1 • MCF-7 NGFTBTTQAS46VV • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBTTQAS46VV data_source Factorbook Download track Download number_of_intervals 2,642 bp_covered 39,630 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR557JTZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 44,864 downloaded_date 07/10/2024 release_date 07/07/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF819AEG_CRGGTCACGTGACSS_sorted.bed.gz processed_file_md5 4ca3b401b63eee42adc5f939fc44f9b7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF819AEG_CRGGTCACGTGACSS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF819AEG_CRGGTCACGTGACSS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF819AEG_CRGGTCACGTGACSS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF819AEG_CRGGTCACGTGACSS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 203a4362d2453c03187f066195a51de3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF819AEG;ENCODE_bigBed_id=ENCFF576OTX;PMID=34755879;Motif_sequence=CRGGTCACGTGACSS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR557JTZ] [Life stage: Adult] [TFBS]
GTF2F1 • K562 NGFTBU4ZKOCDXQ • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBU4ZKOCDXQ data_source Factorbook Download track Download number_of_intervals 8,430 bp_covered 151,740 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR377BLZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 147,782 downloaded_date 07/10/2024 release_date 01/16/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF225ZPU_BSGSSGCCGCCATYTTGR_sorted.bed.gz processed_file_md5 d135303f22d307afe04404c0f213aff0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF225ZPU_BSGSSGCCGCCATYTTGR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF225ZPU_BSGSSGCCGCCATYTTGR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF225ZPU_BSGSSGCCGCCATYTTGR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF225ZPU_BSGSSGCCGCCATYTTGR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bada91ce540000c49eb0ac88ba153d8c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Xiang-Dong Fu, UCSD;System=immune system;ENCODE_BED_id=ENCFF225ZPU;ENCODE_bigBed_id=ENCFF940JZP;PMID=34755879;Motif_sequence=BSGSSGCCGCCATYTTGR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR377BLZ] [Life stage: Adult] [TFBS]
GTF2F1 • K562 NGFTBUU223FQAT • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBUU223FQAT data_source Factorbook Download track Download number_of_intervals 2,790 bp_covered 58,590 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR377BLZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 50,596 downloaded_date 07/10/2024 release_date 01/16/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF225ZPU_TATAAAAGSBGVGGSSBVGSS_sorted.bed.gz processed_file_md5 ceffff5fd66ee93ded1a05cc8f7ee9ef wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF225ZPU_TATAAAAGSBGVGGSSBVGSS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF225ZPU_TATAAAAGSBGVGGSSBVGSS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF225ZPU_TATAAAAGSBGVGGSSBVGSS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF225ZPU_TATAAAAGSBGVGGSSBVGSS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8fadbefe74a1fbf605493f6c5d085694 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Xiang-Dong Fu, UCSD;System=immune system;ENCODE_BED_id=ENCFF225ZPU;ENCODE_bigBed_id=ENCFF940JZP;PMID=34755879;Motif_sequence=TATAAAAGSBGVGGSSBVGSS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR377BLZ] [Life stage: Adult] [TFBS]
GTF2F1 • K562 NGFTBWK2YHWXHQ • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBWK2YHWXHQ data_source Factorbook Download track Download number_of_intervals 1,130 bp_covered 33,900 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR377BLZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 24,552 downloaded_date 07/10/2024 release_date 01/16/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF225ZPU_ASGTAAGTATGAGYTCWYGCMCCTCCGCCC_sorted.bed.gz processed_file_md5 69525fc5d80f8744779e6013ce9b4df6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF225ZPU_ASGTAAGTATGAGYTCWYGCMCCTCCGCCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF225ZPU_ASGTAAGTATGAGYTCWYGCMCCTCCGCCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF225ZPU_ASGTAAGTATGAGYTCWYGCMCCTCCGCCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF225ZPU_ASGTAAGTATGAGYTCWYGCMCCTCCGCCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 365e2afb785fb98fe4a7b4d213dd6121 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Xiang-Dong Fu, UCSD;System=immune system;ENCODE_BED_id=ENCFF225ZPU;ENCODE_bigBed_id=ENCFF940JZP;PMID=34755879;Motif_sequence=ASGTAAGTATGAGYTCWYGCMCCTCCGCCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR377BLZ] [Life stage: Adult] [TFBS]
GTF2F1 • HeLa-S3 NGFTBXFCNN4TTW • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTBXFCNN4TTW data_source Factorbook Download track Download number_of_intervals 7,320 bp_covered 109,800 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000ECZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 120,613 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF855OKP_DSYGCCMYCTRSTGG_sorted.bed.gz processed_file_md5 5d8de7efbbaf7da85e092e1e488b5153 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF855OKP_DSYGCCMYCTRSTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF855OKP_DSYGCCMYCTRSTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF855OKP_DSYGCCMYCTRSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF855OKP_DSYGCCMYCTRSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 771db798a10284e195b55e41456a5387 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF855OKP;ENCODE_bigBed_id=ENCFF868VGE;PMID=34755879;Motif_sequence=DSYGCCMYCTRSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000ECZ] [Life stage: Adult] [TFBS]
GTF2F1 • HepG2 NGFTBYTNATM343 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBYTNATM343 data_source Factorbook Download track Download number_of_intervals 1,309 bp_covered 19,635 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR382PVA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 22,325 downloaded_date 07/10/2024 release_date 02/27/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF361ZLP_SGGSGCVGCCATSTT_sorted.bed.gz processed_file_md5 ee86a9621a7613ed43e86a7739f36773 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF361ZLP_SGGSGCVGCCATSTT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF361ZLP_SGGSGCVGCCATSTT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF361ZLP_SGGSGCVGCCATSTT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF361ZLP_SGGSGCVGCCATSTT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8a5f4010e5b6b7966152fd010664774d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Xiang-Dong Fu, UCSD;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF361ZLP;ENCODE_bigBed_id=ENCFF033HQM;PMID=34755879;Motif_sequence=SGGSGCVGCCATSTT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR382PVA] [Life stage: Child] [TFBS]
GTF2F1 • H1-hESC NGFTBZ5YRJVYDY • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTBZ5YRJVYDY data_source Factorbook Download track Download number_of_intervals 264 bp_covered 3,696 output_type transcription factor binding sites all genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000EBP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2F1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 5,062 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF138MYA_SBCTATAAAAGSVS_sorted.bed.gz processed_file_md5 b5eb08bfaf9222df9497c64cf86898fd wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF138MYA_SBCTATAAAAGSVS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF138MYA_SBCTATAAAAGSVS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF138MYA_SBCTATAAAAGSVS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF138MYA_SBCTATAAAAGSVS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bc9b1feeec853be3f62d607623670912 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF138MYA;ENCODE_bigBed_id=ENCFF399TGL;PMID=34755879;Motif_sequence=SBCTATAAAAGSVS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1, 2) Motif finding GTF2F1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EBP] [TFBS]
GTF2I • K562 NGENCKLCL55DEZ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCKLCL55DEZ data_source ENCODE Download track Download number_of_intervals 12,119 bp_covered 4,307,635 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR653WFU biological_replicate 2 technical_replicate 2_1 antibody GTF2I assay TF ChIP-seq file_format bed narrowPeak file_size 235,215 downloaded_date 06/12/2022 release_date 07/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF998RQM.bed.gz processed_file_md5 f8fd2d9f88059a09fa114408f6f0c9f5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF998RQM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF998RQM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF998RQM/@@download/ENCFF998RQM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF998RQM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5e6f8273501ee956b4b355df417b60b6 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE177691;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-05-18,2020-06-30;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq GTF2I IDR thresholded peaks (narrowPeak) [Experiment: ENCSR653WFU] [Life stage: Adult] [TF ChIP-seq peaks]