GTF2I • WTC11 NGENCOXBRKAEPY • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCOXBRKAEPY data_source ENCODE Download track Download number_of_intervals 7,521 bp_covered 2,558,835 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR281VWZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2I assay TF ChIP-seq file_format bed narrowPeak file_size 148,969 downloaded_date 06/12/2022 release_date 06/06/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF625GCV.bed.gz processed_file_md5 f301b79890f80a1ed98cb5119420d0f4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF625GCV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF625GCV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF625GCV/@@download/ENCFF625GCV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF625GCV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 37c52da51d3aa34452347031fce262f6 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE176987;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-05-18,2021-07-14;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) TF ChIP-seq GTF2I IDR thresholded peaks (narrowPeak) [Experiment: ENCSR281VWZ] [Life stage: Adult] [TF ChIP-seq peaks]
GTF2I • K562 NGENCQFBKQXOSQ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCQFBKQXOSQ data_source ENCODE Download track Download number_of_intervals 23,275 bp_covered 9,125,007 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR653WFU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2I assay TF ChIP-seq file_format bed narrowPeak file_size 451,309 downloaded_date 06/12/2022 release_date 07/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF539BYI.bed.gz processed_file_md5 06eb8572e1d151ac484f414417cf435a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF539BYI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF539BYI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF539BYI/@@download/ENCFF539BYI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF539BYI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 26de0860c2af2d02247c65894269fd85 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE177691;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-05-18,2020-06-30;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GTF2I IDR thresholded peaks (narrowPeak) [Experiment: ENCSR653WFU] [Life stage: Adult] [TF ChIP-seq peaks]
GTF2I • K562 NGENCRZSKOL5B5 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCRZSKOL5B5 data_source ENCODE Download track Download number_of_intervals 22,389 bp_covered 8,768,174 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR653WFU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2I assay TF ChIP-seq file_format bed narrowPeak file_size 434,432 downloaded_date 06/12/2022 release_date 07/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF495PIT.bed.gz processed_file_md5 3239c3cfd9c970cf443b5ec60264317f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF495PIT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF495PIT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF495PIT/@@download/ENCFF495PIT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF495PIT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 422a898fbcf191b6782b8e173061830e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE177691;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-05-18,2020-06-30;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GTF2I conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR653WFU] [Life stage: Adult] [TF ChIP-seq peaks]
GTF2I • WTC11 NGENCVPKWX2NXM • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCVPKWX2NXM data_source ENCODE Download track Download number_of_intervals 3,499 bp_covered 1,177,710 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR281VWZ biological_replicate 1 technical_replicate 1_1 antibody GTF2I assay TF ChIP-seq file_format bed narrowPeak file_size 59,225 downloaded_date 06/12/2022 release_date 06/06/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF293RAW.bed.gz processed_file_md5 607c508b955dae1cb1907e45c07e867a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF293RAW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF293RAW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF293RAW/@@download/ENCFF293RAW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF293RAW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d7c32dd100f481eac9ea69ed89d77413 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE176987;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-05-18,2021-07-14;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1) TF ChIP-seq GTF2I IDR thresholded peaks (narrowPeak) [Experiment: ENCSR281VWZ] [Life stage: Adult] [TF ChIP-seq peaks]
GTF2I • WTC11 NGENCWZ22H4XPK • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCWZ22H4XPK data_source ENCODE Download track Download number_of_intervals 3,210 bp_covered 1,079,732 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR281VWZ biological_replicate 2 technical_replicate 2_1 antibody GTF2I assay TF ChIP-seq file_format bed narrowPeak file_size 61,732 downloaded_date 06/12/2022 release_date 06/06/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF803UGR.bed.gz processed_file_md5 09f08aa68e9ef8f22a239df4c00e65e1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF803UGR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF803UGR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF803UGR/@@download/ENCFF803UGR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF803UGR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2e4c08fadbb9d23ab612ca3b9301029b data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE176987;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-05-18,2021-07-14;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 2) TF ChIP-seq GTF2I IDR thresholded peaks (narrowPeak) [Experiment: ENCSR281VWZ] [Life stage: Adult] [TF ChIP-seq peaks]
GTF2I • WTC11 NGENCZ7EKZ4IUT • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCZ7EKZ4IUT data_source ENCODE Download track Download number_of_intervals 7,547 bp_covered 2,567,779 output_type conservative IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR281VWZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF2I assay TF ChIP-seq file_format bed narrowPeak file_size 149,709 downloaded_date 06/12/2022 release_date 06/06/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF255XXZ.bed.gz processed_file_md5 23211961f92d3cb226acafaea14475bf wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF255XXZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF255XXZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF255XXZ/@@download/ENCFF255XXZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF255XXZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ce4bf7c9071e5b9a3698130aaf1b2996 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE176987;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-05-18,2021-07-14;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) TF ChIP-seq GTF2I conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR281VWZ] [Life stage: Adult] [TF ChIP-seq peaks]
GTF2I • K562 NGENCZCAYQGILM • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCZCAYQGILM data_source ENCODE Download track Download number_of_intervals 16,245 bp_covered 6,131,451 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR653WFU biological_replicate 1 technical_replicate 1_1 antibody GTF2I assay TF ChIP-seq file_format bed narrowPeak file_size 305,032 downloaded_date 06/12/2022 release_date 07/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF606ZUF.bed.gz processed_file_md5 878c0a623136ec9b8185e9459067cdde wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF606ZUF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF606ZUF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF606ZUF/@@download/ENCFF606ZUF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF606ZUF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 bb54d60d9bf56f38eb8c8d55e3c0303d data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE177691;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-05-18,2020-06-30;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq GTF2I IDR thresholded peaks (narrowPeak) [Experiment: ENCSR653WFU] [Life stage: Adult] [TF ChIP-seq peaks]
GTF3A • HepG2 NGENCE2IH7OEYD • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCE2IH7OEYD data_source ENCODE Download track Download number_of_intervals 6,675 bp_covered 4,332,879 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR220AQM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF3A assay TF ChIP-seq file_format bed narrowPeak file_size 134,324 downloaded_date 06/12/2022 release_date 07/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF774GNA.bed.gz processed_file_md5 de36120bc318a090c3ad18289f1cc091 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF774GNA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF774GNA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF774GNA/@@download/ENCFF774GNA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF774GNA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b035e12669f9dfc7688b5902276a781c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GTF3A;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE169839;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-08,2020-06-26;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq GTF3A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR220AQM] [Life stage: Child] [TF ChIP-seq peaks]
GTF3A • HepG2 NGENCJDXOQ4YXB • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCJDXOQ4YXB data_source ENCODE Download track Download number_of_intervals 2,115 bp_covered 1,273,974 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR220AQM biological_replicate 2 technical_replicate 2_1 antibody GTF3A assay TF ChIP-seq file_format bed narrowPeak file_size 42,780 downloaded_date 06/12/2022 release_date 07/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF149CJV.bed.gz processed_file_md5 3708a1525170efc65a581d31e6b0730d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF149CJV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF149CJV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF149CJV/@@download/ENCFF149CJV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF149CJV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 212f1aa29fd962fa80f73b63ca05b75f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GTF3A;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE169839;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-08,2020-06-26;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq GTF3A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR220AQM] [Life stage: Child] [TF ChIP-seq peaks]
GTF3A • HepG2 NGENCKW3274WCO • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCKW3274WCO data_source ENCODE Download track Download number_of_intervals 6,826 bp_covered 4,431,029 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR220AQM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF3A assay TF ChIP-seq file_format bed narrowPeak file_size 137,068 downloaded_date 06/12/2022 release_date 07/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF268DGX.bed.gz processed_file_md5 e3bc5c69a0fc23fdad7cb8ec54e54b3c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF268DGX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF268DGX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF268DGX/@@download/ENCFF268DGX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF268DGX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 496b0aea7909a0a88fd986230b36c5fd data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GTF3A;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE169839;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-08,2020-06-26;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq GTF3A conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR220AQM] [Life stage: Child] [TF ChIP-seq peaks]
GTF3A • HepG2 NGENCSE45L24KC • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCSE45L24KC data_source ENCODE Download track Download number_of_intervals 2,990 bp_covered 2,074,312 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR220AQM biological_replicate 1 technical_replicate 1_1 antibody GTF3A assay TF ChIP-seq file_format bed narrowPeak file_size 58,887 downloaded_date 06/12/2022 release_date 07/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF668NFM.bed.gz processed_file_md5 4fc0ad2daf0060bc3f9780f8454f3805 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF668NFM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF668NFM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF668NFM/@@download/ENCFF668NFM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF668NFM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0af9309c3040ce2f5928545803376f8c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GTF3A;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE169839;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-08,2020-06-26;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq GTF3A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR220AQM] [Life stage: Child] [TF ChIP-seq peaks]
GTF3C2 • HeLa-S3 NGENC3S6Y7ZSTZ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HeLa-S3 TF Show metadata Download track Track metadata identifier NGENC3S6Y7ZSTZ data_source ENCODE Download track Download number_of_intervals 1,608 bp_covered 435,303 output_type IDR thresholded peaks genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000DNY biological_replicate 2 technical_replicate 2_1 antibody GTF3C2 assay TF ChIP-seq file_format bed narrowPeak file_size 30,780 downloaded_date 06/12/2022 release_date 01/06/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF943OXQ.bed.gz processed_file_md5 73e82cc2bdfa186ada88e73e73892fc9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF943OXQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF943OXQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF943OXQ/@@download/ENCFF943OXQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF943OXQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 232641ee9849ea0b4a4c17c196234d0a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HeLa-S3;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 31 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000DNY,GEO:GSM935342,UCSC-ENCODE-hg19:wgEncodeEH000747;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE HeLa-S3 (repl. 2) TF ChIP-seq GTF3C2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DNY] [Life stage: Adult] [TF ChIP-seq peaks]
GTF3C2 • HeLa-S3 NGENC3U6CGB6GM • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HeLa-S3 TF Show metadata Download track Track metadata identifier NGENC3U6CGB6GM data_source ENCODE Download track Download number_of_intervals 2,645 bp_covered 827,253 output_type IDR thresholded peaks genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000DNY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF3C2 assay TF ChIP-seq file_format bed narrowPeak file_size 52,043 downloaded_date 06/12/2022 release_date 01/06/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF169IXD.bed.gz processed_file_md5 4a322711b5db0ca06713d63eb6f6cf8d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF169IXD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF169IXD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF169IXD/@@download/ENCFF169IXD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF169IXD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a7e0109fc39a51631ed0981c1883e30b data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HeLa-S3;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 31 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000DNY,GEO:GSM935342,UCSC-ENCODE-hg19:wgEncodeEH000747;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE HeLa-S3 (repl. 1, 2) TF ChIP-seq GTF3C2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DNY] [Life stage: Adult] [TF ChIP-seq peaks]
GTF3C2 • K562 NGENCBGMWUPSJ5 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCBGMWUPSJ5 data_source ENCODE Download track Download number_of_intervals 584 bp_covered 119,994 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOD biological_replicate 2 technical_replicate 2_1 antibody GTF3C2 assay TF ChIP-seq file_format bed narrowPeak file_size 10,085 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF449PBS.bed.gz processed_file_md5 48ad3f1103ef3902b4abbe6e0f74ded3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF449PBS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF449PBS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF449PBS/@@download/ENCFF449PBS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF449PBS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fbadaa6e66b47fd7f32929656712ece8 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000748,GEO:GSM935343,FactorBook:ENCSR000DOD;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq GTF3C2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOD] [Life stage: Adult] [TF ChIP-seq peaks]
GTF3C2 • K562 NGENCBOP2Z3KOA • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCBOP2Z3KOA data_source ENCODE Download track Download number_of_intervals 918 bp_covered 199,446 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOD biological_replicate 3 technical_replicate 3_1 antibody GTF3C2 assay TF ChIP-seq file_format bed narrowPeak file_size 15,875 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF298HDF.bed.gz processed_file_md5 73ad16039d4128d4d8fdf59e06196de3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF298HDF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF298HDF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF298HDF/@@download/ENCFF298HDF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF298HDF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9020fd24dd1e99d73872c2c702b84a16 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000748,GEO:GSM935343,FactorBook:ENCSR000DOD;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 3) TF ChIP-seq GTF3C2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOD] [Life stage: Adult] [TF ChIP-seq peaks]
GTF3C2 • K562 NGENCC4HERNW4I • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCC4HERNW4I data_source ENCODE Download track Download number_of_intervals 305 bp_covered 58,233 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOD biological_replicate 1 technical_replicate 1_1 antibody GTF3C2 assay TF ChIP-seq file_format bed narrowPeak file_size 5,248 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF068CNQ.bed.gz processed_file_md5 a735d0a7106efdba1a8a1935d8b1944e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF068CNQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF068CNQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF068CNQ/@@download/ENCFF068CNQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF068CNQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0b76444691d2e042e1d79a2320ca11e9 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000748,GEO:GSM935343,FactorBook:ENCSR000DOD;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq GTF3C2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOD] [Life stage: Adult] [TF ChIP-seq peaks]
GTF3C2 • HeLa-S3 NGENCCNQ3VH4LN • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HeLa-S3 TF Show metadata Download track Track metadata identifier NGENCCNQ3VH4LN data_source ENCODE Download track Download number_of_intervals 2,746 bp_covered 859,989 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000DNY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF3C2 assay TF ChIP-seq file_format bed narrowPeak file_size 53,888 downloaded_date 06/12/2022 release_date 01/06/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF144RTV.bed.gz processed_file_md5 71038726415965c279a5c658045d242b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF144RTV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF144RTV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF144RTV/@@download/ENCFF144RTV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF144RTV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 12eaacedf43e214ecc58db0e31ae1b5d data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HeLa-S3;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 31 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000DNY,GEO:GSM935342,UCSC-ENCODE-hg19:wgEncodeEH000747;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE HeLa-S3 (repl. 1, 2) TF ChIP-seq GTF3C2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DNY] [Life stage: Adult] [TF ChIP-seq peaks]
GTF3C2 • K562 NGENCIKKKBNGN5 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCIKKKBNGN5 data_source ENCODE Download track Download number_of_intervals 2,046 bp_covered 478,964 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOD biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody GTF3C2 assay TF ChIP-seq file_format bed narrowPeak file_size 34,817 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF396ZJP.bed.gz processed_file_md5 fb58d6eaa6a474533cad160ec85332e3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF396ZJP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF396ZJP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF396ZJP/@@download/ENCFF396ZJP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF396ZJP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c464906d8322434e6773835dd3daf4f4 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000748,GEO:GSM935343,FactorBook:ENCSR000DOD;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2, 3) TF ChIP-seq GTF3C2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOD] [Life stage: Adult] [TF ChIP-seq peaks]
GTF3C2 • K562 NGENCJFD6Y2J4V • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCJFD6Y2J4V data_source ENCODE Download track Download number_of_intervals 1,340 bp_covered 300,132 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOD biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody GTF3C2 assay TF ChIP-seq file_format bed narrowPeak file_size 23,720 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF955JLT.bed.gz processed_file_md5 72e21ac90f40cef2eb66194079482f5a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF955JLT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF955JLT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF955JLT/@@download/ENCFF955JLT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF955JLT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e481b9395baad460000b1d18cd6ab0d3 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000748,GEO:GSM935343,FactorBook:ENCSR000DOD;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep2_vs_rep3.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2, 3) TF ChIP-seq GTF3C2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOD] [Life stage: Adult] [TF ChIP-seq peaks]
GTF3C2 • K562 NGENCRRV7UEW5I • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCRRV7UEW5I data_source ENCODE Download track Download number_of_intervals 1,078 bp_covered 236,463 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF3C2 assay TF ChIP-seq file_format bed narrowPeak file_size 19,334 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF963AMT.bed.gz processed_file_md5 db181de79202417e58bc70c87a856617 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF963AMT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF963AMT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF963AMT/@@download/ENCFF963AMT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF963AMT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 21f16ddf331fce2836667d41b45d383f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000748,GEO:GSM935343,FactorBook:ENCSR000DOD;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 2_1, 3_1;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq GTF3C2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOD] [Life stage: Adult] [TF ChIP-seq peaks]