GTF3C2 • HeLa-S3 NGENCVECCCTQNX • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HeLa-S3 TF Show metadata Download track Track metadata identifier NGENCVECCCTQNX data_source ENCODE Download track Download number_of_intervals 1,477 bp_covered 436,431 output_type IDR thresholded peaks genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000DNY biological_replicate 1 technical_replicate 1_1 antibody GTF3C2 assay TF ChIP-seq file_format bed narrowPeak file_size 28,538 downloaded_date 06/12/2022 release_date 01/06/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF052XDU.bed.gz processed_file_md5 f6c82ffeedd9b3607d3a656a13215350 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF052XDU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF052XDU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF052XDU/@@download/ENCFF052XDU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF052XDU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6bca8c40cef724dfdb8b6d50e85b0668 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HeLa-S3;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 31 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000DNY,GEO:GSM935342,UCSC-ENCODE-hg19:wgEncodeEH000747;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE HeLa-S3 (repl. 1) TF ChIP-seq GTF3C2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DNY] [Life stage: Adult] [TF ChIP-seq peaks]
GTF3C2 • K562 NGENCWYFTJKB5G • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCWYFTJKB5G data_source ENCODE Download track Download number_of_intervals 1,238 bp_covered 276,083 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOD biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody GTF3C2 assay TF ChIP-seq file_format bed narrowPeak file_size 22,027 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF444CBM.bed.gz processed_file_md5 05aee076cb813ea9e6d9620885b172aa wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF444CBM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF444CBM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF444CBM/@@download/ENCFF444CBM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF444CBM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a71a66ea9b3e4d2fbb3c5a86be09c8e0 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000748,GEO:GSM935343,FactorBook:ENCSR000DOD;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1_vs_rep3.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 2_1, 3_1;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 3) TF ChIP-seq GTF3C2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOD] [Life stage: Adult] [TF ChIP-seq peaks]
GTF3C2 • K562 NGFTB4PFUVRCX4 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB4PFUVRCX4 data_source Factorbook Download track Download number_of_intervals 305 bp_covered 6,405 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOD biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody GTF3C2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,591 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF165YDG_TCTCTACTAAAAATACAAAAA_filtered.bed.gz processed_file_md5 d2634b24ae265157234af289e067e174 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF165YDG_TCTCTACTAAAAATACAAAAA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF165YDG_TCTCTACTAAAAATACAAAAA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF165YDG_TCTCTACTAAAAATACAAAAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF165YDG_TCTCTACTAAAAATACAAAAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e34dfa2cc425bc6c8cc03d9d2cf2398e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Kevin Struhl, HMS;System=immune system;ENCODE_BED_id=ENCFF165YDG;ENCODE_bigBed_id=ENCFF444CBM;PMID=34755879;Motif_sequence=TCTCTACTAAAAATACAAAAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2, 3) Motif finding GTF3C2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DOD] [Life stage: Adult] [TFBS]
GTF3C2 • HeLa-S3 NGFTB6AXEMCMGH • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTB6AXEMCMGH data_source Factorbook Download track Download number_of_intervals 1,884 bp_covered 32,028 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000DNY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF3C2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 28,764 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF662WYP_GTTCGARWCCMGSCTGG_sorted.bed.gz processed_file_md5 84e01578caf9ae33b890804f7a39187a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF662WYP_GTTCGARWCCMGSCTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF662WYP_GTTCGARWCCMGSCTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF662WYP_GTTCGARWCCMGSCTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF662WYP_GTTCGARWCCMGSCTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 43111978bd7eaa7cf8e21b51c3f0e244 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Kevin Struhl, HMS;System=reproductive system;ENCODE_BED_id=ENCFF662WYP;ENCODE_bigBed_id=ENCFF169IXD;PMID=34755879;Motif_sequence=GTTCGARWCCMGSCTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding GTF3C2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNY] [Life stage: Adult] [TFBS]
GTF3C2 • HeLa-S3 NGFTB6XIEVNV72 • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTB6XIEVNV72 data_source Factorbook Download track Download number_of_intervals 1,015 bp_covered 17,255 output_type transcription factor binding sites significant genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000DNY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF3C2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 11,908 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF662WYP_GTTCGARWCCMGSCTGG_filtered.bed.gz processed_file_md5 c8ac94b041f2c4d856de402b3a79b7e1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF662WYP_GTTCGARWCCMGSCTGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF662WYP_GTTCGARWCCMGSCTGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF662WYP_GTTCGARWCCMGSCTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF662WYP_GTTCGARWCCMGSCTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 43111978bd7eaa7cf8e21b51c3f0e244 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Kevin Struhl, HMS;System=reproductive system;ENCODE_BED_id=ENCFF662WYP;ENCODE_bigBed_id=ENCFF169IXD;PMID=34755879;Motif_sequence=GTTCGARWCCMGSCTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding GTF3C2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNY] [Life stage: Adult] [TFBS]
GTF3C2 • HeLa-S3 NGFTB7MJWPH26M • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTB7MJWPH26M data_source Factorbook Download track Download number_of_intervals 7,511 bp_covered 112,665 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000DNY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF3C2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 92,582 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF662WYP_AMWAAAAATAMAAAA_sorted.bed.gz processed_file_md5 b8d99d486e88bc7e26b514f1681ffedc wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF662WYP_AMWAAAAATAMAAAA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF662WYP_AMWAAAAATAMAAAA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF662WYP_AMWAAAAATAMAAAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF662WYP_AMWAAAAATAMAAAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 46322d5b91f5ec9504b6ef606d872285 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Kevin Struhl, HMS;System=reproductive system;ENCODE_BED_id=ENCFF662WYP;ENCODE_bigBed_id=ENCFF169IXD;PMID=34755879;Motif_sequence=AMWAAAAATAMAAAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding GTF3C2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNY] [Life stage: Adult] [TFBS]
GTF3C2 • K562 NGFTB7V7QKSRE6 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB7V7QKSRE6 data_source Factorbook Download track Download number_of_intervals 418 bp_covered 10,868 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOD biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody GTF3C2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 8,212 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF165YDG_CGGGGTTTCACCATGTTGGCCAGGCT_filtered.bed.gz processed_file_md5 2d499a84527ae039d8e8b9f5ae5083be wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF165YDG_CGGGGTTTCACCATGTTGGCCAGGCT_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF165YDG_CGGGGTTTCACCATGTTGGCCAGGCT_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF165YDG_CGGGGTTTCACCATGTTGGCCAGGCT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF165YDG_CGGGGTTTCACCATGTTGGCCAGGCT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b67f381e39ce195626b5fa8c0992b73b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Kevin Struhl, HMS;System=immune system;ENCODE_BED_id=ENCFF165YDG;ENCODE_bigBed_id=ENCFF444CBM;PMID=34755879;Motif_sequence=CGGGGTTTCACCATGTTGGCCAGGCT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2, 3) Motif finding GTF3C2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DOD] [Life stage: Adult] [TFBS]
GTF3C2 • HeLa-S3 NGFTBAZTLFRY5G • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTBAZTLFRY5G data_source Factorbook Download track Download number_of_intervals 877 bp_covered 16,663 output_type transcription factor binding sites significant genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000DNY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF3C2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 13,382 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF662WYP_AYGGGGTTTCACYATGTTG_filtered.bed.gz processed_file_md5 880a1209f8ddf61f76f204f6c3fea7b2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF662WYP_AYGGGGTTTCACYATGTTG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF662WYP_AYGGGGTTTCACYATGTTG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF662WYP_AYGGGGTTTCACYATGTTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF662WYP_AYGGGGTTTCACYATGTTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7b81e7c6e49efa157a517241800b9193 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Kevin Struhl, HMS;System=reproductive system;ENCODE_BED_id=ENCFF662WYP;ENCODE_bigBed_id=ENCFF169IXD;PMID=34755879;Motif_sequence=AYGGGGTTTCACYATGTTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding GTF3C2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNY] [Life stage: Adult] [TFBS]
GTF3C2 • K562 NGFTBHFRMOMUL2 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBHFRMOMUL2 data_source Factorbook Download track Download number_of_intervals 494 bp_covered 9,386 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOD biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody GTF3C2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 6,882 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF165YDG_GGAYTCGAACCCRSGACCY_filtered.bed.gz processed_file_md5 e3a0ae784328a842830c279f7ccc6c5a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF165YDG_GGAYTCGAACCCRSGACCY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF165YDG_GGAYTCGAACCCRSGACCY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF165YDG_GGAYTCGAACCCRSGACCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF165YDG_GGAYTCGAACCCRSGACCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f0f2a7343d124b66c1ff5f38b41f182b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Kevin Struhl, HMS;System=immune system;ENCODE_BED_id=ENCFF165YDG;ENCODE_bigBed_id=ENCFF444CBM;PMID=34755879;Motif_sequence=GGAYTCGAACCCRSGACCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2, 3) Motif finding GTF3C2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DOD] [Life stage: Adult] [TFBS]
GTF3C2 • HeLa-S3 NGFTBHUT4OM4GZ • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTBHUT4OM4GZ data_source Factorbook Download track Download number_of_intervals 1,820 bp_covered 34,580 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000DNY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF3C2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 32,336 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF662WYP_AYGGGGTTTCACYATGTTG_sorted.bed.gz processed_file_md5 3c909d4795e44a6659c08d846cf5a298 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF662WYP_AYGGGGTTTCACYATGTTG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF662WYP_AYGGGGTTTCACYATGTTG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF662WYP_AYGGGGTTTCACYATGTTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF662WYP_AYGGGGTTTCACYATGTTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7b81e7c6e49efa157a517241800b9193 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Kevin Struhl, HMS;System=reproductive system;ENCODE_BED_id=ENCFF662WYP;ENCODE_bigBed_id=ENCFF169IXD;PMID=34755879;Motif_sequence=AYGGGGTTTCACYATGTTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding GTF3C2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNY] [Life stage: Adult] [TFBS]
GTF3C2 • K562 NGFTBHZMTSTFNV • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBHZMTSTFNV data_source Factorbook Download track Download number_of_intervals 65 bp_covered 1,365 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOD biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody GTF3C2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,157 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF165YDG_TARVGCGTYKGACTHBDAATC_filtered.bed.gz processed_file_md5 5465c922062763e594d9f625117a7b72 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF165YDG_TARVGCGTYKGACTHBDAATC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF165YDG_TARVGCGTYKGACTHBDAATC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF165YDG_TARVGCGTYKGACTHBDAATC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF165YDG_TARVGCGTYKGACTHBDAATC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ba7740b1544fc4d81733d54df70adb99 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Kevin Struhl, HMS;System=immune system;ENCODE_BED_id=ENCFF165YDG;ENCODE_bigBed_id=ENCFF444CBM;PMID=34755879;Motif_sequence=TARVGCGTYKGACTHBDAATC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2, 3) Motif finding GTF3C2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DOD] [Life stage: Adult] [TFBS]
GTF3C2 • K562 NGFTBMKBKRELMQ • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBMKBKRELMQ data_source Factorbook Download track Download number_of_intervals 574 bp_covered 14,924 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOD biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody GTF3C2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 12,178 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165YDG_CGGGGTTTCACCATGTTGGCCAGGCT_sorted.bed.gz processed_file_md5 de8b2fc4497e334279cf6bd537fed140 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165YDG_CGGGGTTTCACCATGTTGGCCAGGCT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165YDG_CGGGGTTTCACCATGTTGGCCAGGCT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF165YDG_CGGGGTTTCACCATGTTGGCCAGGCT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF165YDG_CGGGGTTTCACCATGTTGGCCAGGCT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b67f381e39ce195626b5fa8c0992b73b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Kevin Struhl, HMS;System=immune system;ENCODE_BED_id=ENCFF165YDG;ENCODE_bigBed_id=ENCFF444CBM;PMID=34755879;Motif_sequence=CGGGGTTTCACCATGTTGGCCAGGCT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2, 3) Motif finding GTF3C2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DOD] [Life stage: Adult] [TFBS]
GTF3C2 • K562 NGFTBP25FQCM4E • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBP25FQCM4E data_source Factorbook Download track Download number_of_intervals 563 bp_covered 11,823 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOD biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody GTF3C2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 9,788 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165YDG_TCTCTACTAAAAATACAAAAA_sorted.bed.gz processed_file_md5 979a9051e4896b55cf5efd585b086f07 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165YDG_TCTCTACTAAAAATACAAAAA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165YDG_TCTCTACTAAAAATACAAAAA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF165YDG_TCTCTACTAAAAATACAAAAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF165YDG_TCTCTACTAAAAATACAAAAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e34dfa2cc425bc6c8cc03d9d2cf2398e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Kevin Struhl, HMS;System=immune system;ENCODE_BED_id=ENCFF165YDG;ENCODE_bigBed_id=ENCFF444CBM;PMID=34755879;Motif_sequence=TCTCTACTAAAAATACAAAAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2, 3) Motif finding GTF3C2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DOD] [Life stage: Adult] [TFBS]
GTF3C2 • K562 NGFTBPHFY6LRAO • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBPHFY6LRAO data_source Factorbook Download track Download number_of_intervals 1,042 bp_covered 19,798 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOD biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody GTF3C2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 17,610 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165YDG_GGAYTCGAACCCRSGACCY_sorted.bed.gz processed_file_md5 b5f90312e8cc86e39419260aff6a3c0d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165YDG_GGAYTCGAACCCRSGACCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165YDG_GGAYTCGAACCCRSGACCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF165YDG_GGAYTCGAACCCRSGACCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF165YDG_GGAYTCGAACCCRSGACCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f0f2a7343d124b66c1ff5f38b41f182b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Kevin Struhl, HMS;System=immune system;ENCODE_BED_id=ENCFF165YDG;ENCODE_bigBed_id=ENCFF444CBM;PMID=34755879;Motif_sequence=GGAYTCGAACCCRSGACCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2, 3) Motif finding GTF3C2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DOD] [Life stage: Adult] [TFBS]
GTF3C2 • HeLa-S3 NGFTBTFRFGGILV • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTBTFRFGGILV data_source Factorbook Download track Download number_of_intervals 1,953 bp_covered 29,295 output_type transcription factor binding sites significant genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000DNY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GTF3C2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 16,096 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF662WYP_AMWAAAAATAMAAAA_filtered.bed.gz processed_file_md5 bf6f9b349b75c4f73530731dc817848b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF662WYP_AMWAAAAATAMAAAA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF662WYP_AMWAAAAATAMAAAA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF662WYP_AMWAAAAATAMAAAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF662WYP_AMWAAAAATAMAAAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 46322d5b91f5ec9504b6ef606d872285 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Kevin Struhl, HMS;System=reproductive system;ENCODE_BED_id=ENCFF662WYP;ENCODE_bigBed_id=ENCFF169IXD;PMID=34755879;Motif_sequence=AMWAAAAATAMAAAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding GTF3C2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNY] [Life stage: Adult] [TFBS]
GTF3C2 • K562 NGFTBZZSNEE3WF • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBZZSNEE3WF data_source Factorbook Download track Download number_of_intervals 183 bp_covered 3,843 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DOD biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody GTF3C2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,333 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165YDG_TARVGCGTYKGACTHBDAATC_sorted.bed.gz processed_file_md5 d4831d6493f67e33061d1eeb379d8ce1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165YDG_TARVGCGTYKGACTHBDAATC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165YDG_TARVGCGTYKGACTHBDAATC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF165YDG_TARVGCGTYKGACTHBDAATC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF165YDG_TARVGCGTYKGACTHBDAATC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ba7740b1544fc4d81733d54df70adb99 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Kevin Struhl, HMS;System=immune system;ENCODE_BED_id=ENCFF165YDG;ENCODE_bigBed_id=ENCFF444CBM;PMID=34755879;Motif_sequence=TARVGCGTYKGACTHBDAATC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2, 3) Motif finding GTF3C2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DOD] [Life stage: Adult] [TFBS]
GZF1 • HepG2 NGENCDNSM7JTUT • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCDNSM7JTUT data_source ENCODE Download track Download number_of_intervals 6,439 bp_covered 4,079,524 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR479WQX biological_replicate 2 technical_replicate 2_1 antibody GZF1 assay TF ChIP-seq file_format bed narrowPeak file_size 126,515 downloaded_date 06/12/2022 release_date 08/22/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF252NES.bed.gz processed_file_md5 9e1ade165084affe0093bf1156fb93ad wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF252NES.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF252NES.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF252NES/@@download/ENCFF252NES.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF252NES.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 031f3970f56cf3d4f7c8163deb6767f6 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GZF1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170196;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-08-28,2020-08-14;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq GZF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR479WQX] [Life stage: Child] [TF ChIP-seq peaks]
GZF1 • HepG2 NGENCEMHBYETR6 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCEMHBYETR6 data_source ENCODE Download track Download number_of_intervals 9,784 bp_covered 5,678,151 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR479WQX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GZF1 assay TF ChIP-seq file_format bed narrowPeak file_size 193,276 downloaded_date 06/12/2022 release_date 08/22/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF060TLH.bed.gz processed_file_md5 3d5e393d0725a52f84d9f1aea4599e1c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF060TLH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF060TLH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF060TLH/@@download/ENCFF060TLH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF060TLH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 89c01b6dcd65e7bd595c6ed762f81132 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GZF1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170196;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-08-28,2020-08-14;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq GZF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR479WQX] [Life stage: Child] [TF ChIP-seq peaks]
GZF1 • HepG2 NGENCQT43M66GD • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCQT43M66GD data_source ENCODE Download track Download number_of_intervals 7,936 bp_covered 4,600,142 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR479WQX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody GZF1 assay TF ChIP-seq file_format bed narrowPeak file_size 156,716 downloaded_date 06/12/2022 release_date 08/22/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF247OAG.bed.gz processed_file_md5 6ddc3b69bf4de8e9bf894fa446491f5f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF247OAG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF247OAG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF247OAG/@@download/ENCFF247OAG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF247OAG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3a00a1b86ff8582f3b3944fcc15f6d90 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GZF1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170196;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-08-28,2020-08-14;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq GZF1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR479WQX] [Life stage: Child] [TF ChIP-seq peaks]
GZF1 • HepG2 NGENCWDUY5BLYJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCWDUY5BLYJ data_source ENCODE Download track Download number_of_intervals 3,402 bp_covered 1,615,478 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR479WQX biological_replicate 1 technical_replicate 1_1 antibody GZF1 assay TF ChIP-seq file_format bed narrowPeak file_size 68,100 downloaded_date 06/12/2022 release_date 08/22/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF048NBB.bed.gz processed_file_md5 58b582399353f820851817e6f57700f7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF048NBB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF048NBB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF048NBB/@@download/ENCFF048NBB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF048NBB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 98cbad6e385cc344bf50c05fd4b483e5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GZF1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170196;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-08-28,2020-08-14;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq GZF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR479WQX] [Life stage: Child] [TF ChIP-seq peaks]