H2A.Z • IMR-90 NGRMPVWTSLTCTX • ROADMAP [lifted]25693563 ChIP-seq IMR-90 TF Show metadata Download track Track metadata identifier NGRMPVWTSLTCTX data_source ROADMAP-lifted Download track Download number_of_intervals 208,555 bp_covered 466,251,473 output_type peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H2A.Z assay ChIP-seq file_format bed gappedPeak-lifted file_size 10,857,041 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/28/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.IMR90.H2A.Z.AY4.gappedPeak.lifted.bed.gz processed_file_md5 6d9267b1bc32134e69165a5352684539 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.IMR90.H2A.Z.AY4.gappedPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.IMR90.H2A.Z.AY4.gappedPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/gappedPeak/UCSD.IMR90.H2A.Z.AY4.gappedPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/gappedpeak/UCSD.IMR90.H2A.Z.AY4.gappedPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/gappedpeak/ raw_file_md5 8990b6b5c7bf898fe7f02da66eed2839 data_category TF ChIP-seq peaks Genomic feature type ChIP-seq peaks track_description version=2015;Original_cell_type=IMR 90;Donor=AY4;schema=BED3+15;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=yes system_category Respiratory life_stage Unknown track_name ROADMAP-lifted IMR-90 ChIP-seq H2A.Z peaks (gappedPeak-lifted) [TF ChIP-seq peaks]
H2A.Z • H1-hESC NGRMPX2Y5SWPOK • ROADMAP [lifted]25693563 ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGRMPX2Y5SWPOK data_source ROADMAP-lifted Download track Download number_of_intervals 1,008,672 bp_covered 799,998,237 output_type peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H2A.Z assay ChIP-seq file_format bed broadPeak-lifted file_size 31,326,569 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1.H2A.Z.AY1.broadPeak.lifted.bed.gz processed_file_md5 f8e759ae788d9234cd1f4164070dc1b1 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1.H2A.Z.AY1.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1.H2A.Z.AY1.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/UCSD.H1.H2A.Z.AY1.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/UCSD.H1.H2A.Z.AY1.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 8c807ad3e75673d3db0a4a122d98e768 data_category TF ChIP-seq peaks Genomic feature type ChIP-seq peaks track_description version=2015;Original_cell_type=H1;Donor=AY1;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP-lifted H1-hESC ChIP-seq H2A.Z peaks (broadPeak-lifted) [Life stage: Embryonic] [TF ChIP-seq peaks]
H2A.Z • Mesenchymal stem cell NGRMPXUM4LXA4W • ROADMAP [lifted]25693563 ChIP-seq Mesenchymal stem cell TF Show metadata Download track Track metadata identifier NGRMPXUM4LXA4W data_source ROADMAP-lifted Download track Download number_of_intervals 147,679 bp_covered 33,345,778 output_type peaks genome_build hg38 cell_type Mesenchymal stem cell biosample_type Stem cell biosample_term_id CL:0000134 tissue_category Connective Tissue encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H2A.Z assay ChIP-seq file_format bed narrowPeak-lifted file_size 4,426,832 downloaded_date 08/15/2018 release_date 11/30/2014 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/UCSD.H1_Derived_Mesenchymal_Stem_Cells.H2A.Z.AK278.narrowPeak.lifted.bed.gz processed_file_md5 f8177604d3ba338566f391da90ff1fd3 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/UCSD.H1_Derived_Mesenchymal_Stem_Cells.H2A.Z.AK278.narrowPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/UCSD.H1_Derived_Mesenchymal_Stem_Cells.H2A.Z.AK278.narrowPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/narrowPeak/UCSD.H1_Derived_Mesenchymal_Stem_Cells.H2A.Z.AK278.narrowPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/narrowpeak/UCSD.H1_Derived_Mesenchymal_Stem_Cells.H2A.Z.AK278.narrowPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/narrowpeak/ raw_file_md5 8f055ccfaa2dab2a94b180549c74c701 data_category TF ChIP-seq peaks Genomic feature type ChIP-seq peaks track_description version=2015;Original_cell_type=H1 Derived Mesenchymal Stem Cells;Donor=AK278;schema=BED3+10;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Skeletal life_stage Embryonic track_name ROADMAP-lifted Mesenchymal stem cell ChIP-seq H2A.Z peaks (narrowPeak-lifted) [Life stage: Embryonic] [TF ChIP-seq peaks]
H2A.Z • Trophoblast NGRMPYUZWIP7V4 • ROADMAP [lifted]25693563 ChIP-seq Trophoblast TF Show metadata Download track Track metadata identifier NGRMPYUZWIP7V4 data_source ROADMAP-lifted Download track Download number_of_intervals 90,504 bp_covered 129,127,218 output_type peaks genome_build hg38 cell_type Trophoblast biosample_type In vitro differentiated cells biosample_term_id UBERON:0000088 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H2A.Z assay ChIP-seq file_format bed gappedPeak-lifted file_size 4,386,911 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/28/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H2A.Z.AY68.gappedPeak.lifted.bed.gz processed_file_md5 069b5cc298f6041da34cf7e612d985ba wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H2A.Z.AY68.gappedPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H2A.Z.AY68.gappedPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/gappedPeak/UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H2A.Z.AY68.gappedPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/gappedpeak/UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H2A.Z.AY68.gappedPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/gappedpeak/ raw_file_md5 321bc7a41a57f9450a6e24e6ab770ad9 data_category TF ChIP-seq peaks Genomic feature type ChIP-seq peaks track_description version=2015;Original_cell_type=H1 BMP4 Derived Trophoblast Cultured Cells;Donor=AY68;schema=BED3+15;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=NTR:0000856;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP-lifted Trophoblast ChIP-seq H2A.Z peaks (gappedPeak-lifted) [Life stage: Embryonic] [TF ChIP-seq peaks]
H2AFZ • SK-N-SH NGENC23BFN2XDV • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq SK-N-SH Histone Show metadata Download track Track metadata identifier NGENC23BFN2XDV data_source ENCODE Download track Download number_of_intervals 40,172 bp_covered 23,610,221 output_type pseudoreplicated peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR366QMB biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,028,175 downloaded_date 05/15/2024 release_date 01/21/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF460XEO.bed.gz processed_file_md5 c4f767e2bf8bfd7d8e39eb94aec24705 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF460XEO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF460XEO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF460XEO/@@download/ENCFF460XEO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF460XEO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9af72e511363fa175efb56990384c487 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 4 years;Reference=PMID:32728046;External_resources=GEO:GSE96137;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-19,2015-08-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR366QMB] [Life stage: Child] [Histone ChIP-seq peaks]
H2AFZ • Parathyroid adenoma NGENC254NTN4MB • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Parathyroid adenoma Histone Show metadata Download track Track metadata identifier NGENC254NTN4MB data_source ENCODE Download track Download number_of_intervals 68,739 bp_covered 54,405,143 output_type pseudoreplicated peaks genome_build hg38 cell_type Parathyroid adenoma biosample_type Tissue biosample_term_id Not available tissue_category Endocrine encode_experiment_id ENCSR249LNW biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,688,932 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF037TZH.bed.gz processed_file_md5 b90a786623906420d0984c3e99e75159 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF037TZH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF037TZH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF037TZH/@@download/ENCFF037TZH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF037TZH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7956671d6b2c27d578e1d0a941fa1271 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens parathyroid adenoma tissue male adult (65 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=adult 65 years;Reference=NR;External_resources=NR;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-12-01;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=parathyroid adenoma;ENCODE_cell_slims=NR;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0001226;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Adult track_name ENCODE Parathyroid adenoma (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR249LNW] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • IMR-90 NGENC272UDZ65R • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGENC272UDZ65R data_source ENCODE Download track Download number_of_intervals 407,928 bp_covered 92,422,421 output_type peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id ENCSR124DYB biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 8,186,111 downloaded_date 06/10/2020 release_date 02/19/2017 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF787SLX.bed.gz processed_file_md5 70c698acbeeef3b9f03cd490a5fb4654 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF787SLX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF787SLX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF787SLX/@@download/ENCFF787SLX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF787SLX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 932c1634f9808c1a22cd31752305d3a8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ peaks track_description version=2024;Biosample_summary=Homo sapiens IMR-90;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM818008,GEO:GSM818007;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=r2.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=IMR90;Analysis_title=ENCODE3 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Embryonic track_name ENCODE IMR-90 (repl. 2) Histone ChIP-seq H2AFZ peaks (narrowPeak) [Experiment: ENCSR124DYB] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2AFZ • Smooth muscle cell NGENC2F3R4SXUK • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Smooth muscle cell Histone Show metadata Download track Track metadata identifier NGENC2F3R4SXUK data_source ENCODE Download track Download number_of_intervals 29,611 bp_covered 21,929,650 output_type pseudoreplicated peaks genome_build hg38 cell_type Smooth muscle cell biosample_type In vitro differentiated cells biosample_term_id CL:0000192 tissue_category Muscle encode_experiment_id ENCSR301VIW biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 727,442 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF091SLD.bed.gz processed_file_md5 ee541a37fb1c8461b6374ff4adc464f8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF091SLD.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF091SLD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF091SLD/@@download/ENCFF091SLD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF091SLD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 17c08073c8422530bddab9c07f8e0a5a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens smooth muscle cell originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=SESCC,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE96109;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-06,2016-04-27;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=smooth muscle cell;ENCODE_cell_slims=smooth muscle cell;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=smooth muscle fiber,myocytes, smooth muscle,SMCs;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000192;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Embryonic track_name ENCODE Smooth muscle cell (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR301VIW] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2AFZ • Astrocyte NGENC2JQTJQ5DJ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Astrocyte Histone Show metadata Download track Track metadata identifier NGENC2JQTJQ5DJ data_source ENCODE Download track Download number_of_intervals 63,403 bp_covered 39,706,062 output_type pseudoreplicated peaks genome_build hg38 cell_type Astrocyte biosample_type Primary cell biosample_term_id CL:0000127 tissue_category Brain encode_experiment_id ENCSR000AQP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,687,564 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF556BYA.bed.gz processed_file_md5 e1d4be2466d7b3098d64fb0e3d44bd86 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF556BYA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF556BYA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF556BYA/@@download/ENCFF556BYA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF556BYA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7f6fa05040379455d2c1c1d1e66eb619 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens astrocyte;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM1003499,UCSC-ENCODE-hg19:wgEncodeEH002397;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06,2011-02-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=astrocyte;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=astrocytic glia;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000127;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Unknown track_name ENCODE Astrocyte (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AQP] [Histone ChIP-seq peaks]
H2AFZ • Fibroblast NGENC2TZMXSLAY • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Fibroblast Histone Show metadata Download track Track metadata identifier NGENC2TZMXSLAY data_source ENCODE Download track Download number_of_intervals 42,556 bp_covered 18,685,465 output_type replicated peaks genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Lung encode_experiment_id ENCSR000ARP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 961,322 downloaded_date 06/12/2022 release_date 08/14/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF390TMT.bed.gz processed_file_md5 aca2affff98e3a36e3d35c55038d821e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF390TMT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF390TMT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF390TMT/@@download/ENCFF390TMT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF390TMT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 17dcc2dee3c74a606f9f323856759a1b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ replicated peaks track_description version=2024;Biosample_summary=Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002423,GEO:GSM1003530;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06,2011-02-10;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=fibroblast of lung;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002553;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult, Child track_name ENCODE Fibroblast (repl. 1, 2) Histone ChIP-seq H2AFZ replicated peaks (narrowPeak) [Experiment: ENCSR000ARP] [Life stage: Adult, Child] [Histone ChIP-seq peaks]
H2AFZ • Hepatocyte NGENC2WBWSENOH • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Hepatocyte Histone Show metadata Download track Track metadata identifier NGENC2WBWSENOH data_source ENCODE Download track Download number_of_intervals 33,255 bp_covered 25,946,465 output_type pseudoreplicated peaks genome_build hg38 cell_type Hepatocyte biosample_type In vitro differentiated cells biosample_term_id CL:0000182 tissue_category Liver encode_experiment_id ENCSR883XRM biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 910,322 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF290FEK.bed.gz processed_file_md5 3d88649347a67f49bf8d44ed9d46a0e9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF290FEK.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF290FEK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF290FEK/@@download/ENCFF290FEK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF290FEK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 da562096ccb98331a8573934b35c7750 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens hepatocyte originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=SESCC,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE96447;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-19,2016-04-27;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=hepatocyte;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000182;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Embryonic track_name ENCODE Hepatocyte (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR883XRM] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2AFZ • Epithelial cell NGENC2Z6WSKNTW • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Epithelial cell Histone Show metadata Download track Track metadata identifier NGENC2Z6WSKNTW data_source ENCODE Download track Download number_of_intervals 99,593 bp_covered 70,861,125 output_type pseudoreplicated peaks genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Breast encode_experiment_id ENCSR000ARF biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 2,699,177 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF455DMJ.bed.gz processed_file_md5 e2c42e7ea7f83a71cf73b4926469440f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF455DMJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF455DMJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF455DMJ/@@download/ENCFF455DMJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF455DMJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 03e8c1d1ccb2f4636cafb46b9c8a8b75 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mammary epithelial cell female adult (50 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 50 years;Reference=PMID:32728046;External_resources=GEO:GSM1003500,UCSC-ENCODE-hg19:wgEncodeEH002413;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06,2011-02-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=mammary epithelial cell;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=exocrine system,integumental system;ENCODE_biosample_term_synonyms=mammary epithelial cell,breast epithelial cell;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002327;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE Epithelial cell (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ARF] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • B cell NGENC3AXU2PFWH • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq B cell Histone Show metadata Download track Track metadata identifier NGENC3AXU2PFWH data_source ENCODE Download track Download number_of_intervals 53,048 bp_covered 52,703,012 output_type pseudoreplicated peaks genome_build hg38 cell_type B cell biosample_type Primary cell biosample_term_id CL:0000236 tissue_category Immune encode_experiment_id ENCSR000AUX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,449,735 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF565CCY.bed.gz processed_file_md5 45e90502a7e59c13bc58e1faee768379 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF565CCY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF565CCY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF565CCY/@@download/ENCFF565CCY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF565CCY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 19b528030bde7b795835ea4357babf5f data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens B cell female adult (27 years) and female adult (43 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM1003476,UCSC-ENCODE-hg19:wgEncodeEH003133;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06,2016-11-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=B cell;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=B-cell,B lymphocyte,B-lymphocyte;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000236;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE B cell (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AUX] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • H1-hESC NGENC3IP5XCF3C • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGENC3IP5XCF3C data_source ENCODE Download track Download number_of_intervals 71,775 bp_covered 22,438,420 output_type pseudoreplicated peaks genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000APX biological_replicate 2 technical_replicate 2_2 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,645,796 downloaded_date 05/15/2024 release_date 01/15/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF895WOX.bed.gz processed_file_md5 cda846539532e5b78969315264891db7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF895WOX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF895WOX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF895WOX/@@download/ENCFF895WOX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF895WOX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 49eaef6b483bac072b951d9a25cecb08 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM1003579,UCSC-ENCODE-hg19:wgEncodeEH002082;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06,2011-02-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000APX] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2AFZ • OCI-LY3 NGENC3SIS6SCP3 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq OCI-LY3 Histone Show metadata Download track Track metadata identifier NGENC3SIS6SCP3 data_source ENCODE Download track Download number_of_intervals 56,559 bp_covered 28,216,540 output_type pseudoreplicated peaks genome_build hg38 cell_type OCI-LY3 biosample_type Cell line biosample_term_id EFO:0006710 tissue_category Blood encode_experiment_id ENCSR629TDG biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,396,232 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF017DAF.bed.gz processed_file_md5 3e456e5e9c2cbe9e09ae2e1ca15d0ec8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF017DAF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF017DAF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF017DAF/@@download/ENCFF017DAF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF017DAF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9dae0468a64aca2d56a13e86fd0fd3af data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens OCI-LY3;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 52 years;Reference=PMID:32728046;External_resources=GEO:GSE96276;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=OCI-LY3;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=Oci-Ly-3 cell,Oci-Ly-3;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0006710;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE OCI-LY3 (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR629TDG] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • GM23338 NGENC43DL3JJS4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq GM23338 Histone Show metadata Download track Track metadata identifier NGENC43DL3JJS4 data_source ENCODE Download track Download number_of_intervals 155,616 bp_covered 97,272,307 output_type replicated peaks genome_build hg38 cell_type GM23338 biosample_type Cell line biosample_term_id EFO:0007950 tissue_category iPSC encode_experiment_id ENCSR908FQA biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 3,812,518 downloaded_date 06/12/2022 release_date 03/03/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF851AMF.bed.gz processed_file_md5 84b34f1e30a7d64ba4caab1a631c8f84 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF851AMF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF851AMF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF851AMF/@@download/ENCFF851AMF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF851AMF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 16c2fb89e2ed7171ea78fd7da6e0969d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ replicated peaks track_description version=2024;Biosample_summary=Homo sapiens GM23338 originated from GM23248;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE96465;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-14,2016-05-03;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM23338;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007950;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Stem Cell life_stage Adult track_name ENCODE GM23338 (repl. 1, 2) Histone ChIP-seq H2AFZ replicated peaks (narrowPeak) [Experiment: ENCSR908FQA] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • KMS-11 NGENC4BGTISEBF • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq KMS-11 Histone Show metadata Download track Track metadata identifier NGENC4BGTISEBF data_source ENCODE Download track Download number_of_intervals 25,200 bp_covered 20,321,874 output_type pseudoreplicated peaks genome_build hg38 cell_type KMS-11 biosample_type Cell line biosample_term_id EFO:0005694 tissue_category Immune encode_experiment_id ENCSR499RMZ biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 608,800 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF820IZE.bed.gz processed_file_md5 b129caf9aebce083371f2fec0adfd64b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF820IZE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF820IZE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF820IZE/@@download/ENCFF820IZE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF820IZE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a097516453161a15d6f4f3237d03dec2 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens KMS-11;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 67 years;Reference=PMID:32728046;External_resources=GEO:GSE96196;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-01,2015-08-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=KMS-11;ENCODE_cell_slims=hematopoietic cell;ENCODE_system_slims=skeletal system;ENCODE_biosample_term_synonyms=KMS11,KMS_11;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005694;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE KMS-11 (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR499RMZ] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • SU-DHL-6 NGENC4DCCOIU3J • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq SU-DHL-6 Histone Show metadata Download track Track metadata identifier NGENC4DCCOIU3J data_source ENCODE Download track Download number_of_intervals 47,399 bp_covered 36,527,953 output_type replicated peaks genome_build hg38 cell_type SU-DHL-6 biosample_type Cell line biosample_term_id EFO:0002357 tissue_category Blood encode_experiment_id ENCSR869HJR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,236,150 downloaded_date 06/12/2022 release_date 11/11/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF245UFS.bed.gz processed_file_md5 68555f9bae2e692c7842f6c183f00e1f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF245UFS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF245UFS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF245UFS/@@download/ENCFF245UFS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF245UFS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d3ea20a2309f441e192d322478f45fd2 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ replicated peaks track_description version=2024;Biosample_summary=Homo sapiens SU-DHL-6;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 43 years;Reference=PMID:32728046;External_resources=GEO:GSE96432;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SU-DHL-6;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=SU-DHL-6;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002357;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE SU-DHL-6 (repl. 1, 2) Histone ChIP-seq H2AFZ replicated peaks (narrowPeak) [Experiment: ENCSR869HJR] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • Fibroblast NGENC4E7EFIE6G • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Fibroblast Histone Show metadata Download track Track metadata identifier NGENC4E7EFIE6G data_source ENCODE Download track Download number_of_intervals 45,207 bp_covered 19,392,102 output_type pseudoreplicated peaks genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Lung encode_experiment_id ENCSR000ARP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,015,730 downloaded_date 06/12/2022 release_date 08/14/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF171XRE.bed.gz processed_file_md5 9511a1cf1d2796b777b93464dabb0f51 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF171XRE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF171XRE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF171XRE/@@download/ENCFF171XRE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF171XRE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2633982aca5b7bc26cf02ff7f85b6041 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002423,GEO:GSM1003530;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06,2011-02-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=fibroblast of lung;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002553;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult, Child track_name ENCODE Fibroblast (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ARP] [Life stage: Adult, Child] [Histone ChIP-seq peaks]
H2AFZ • GM12878 NGENC4EPTP2XGM • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq GM12878 Histone Show metadata Download track Track metadata identifier NGENC4EPTP2XGM data_source ENCODE Download track Download number_of_intervals 64,643 bp_covered 35,327,514 output_type pseudoreplicated peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000AOV biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,469,594 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF183MDX.bed.gz processed_file_md5 b370ac8c083f1400c9dffc7418385185 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF183MDX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF183MDX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF183MDX/@@download/ENCFF183MDX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF183MDX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 222d34f0e40cd7ef354de0bff2221536 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM733767,UCSC-ENCODE-hg19:wgEncodeEH001033;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AOV] [Life stage: Adult] [Histone ChIP-seq peaks]