H2AFZ • K562 NGENC4HW7AZLVJ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq K562 Histone Show metadata Download track Track metadata identifier NGENC4HW7AZLVJ data_source ENCODE Download track Download number_of_intervals 88,993 bp_covered 59,374,887 output_type pseudoreplicated peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000APC biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 2,233,817 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF022EPB.bed.gz processed_file_md5 960f3d6f2632ca9ba3264b4040caa41b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF022EPB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF022EPB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF022EPB/@@download/ENCFF022EPB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF022EPB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5f94dc8dc33e8da4402b2bf9466f9eb9 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSM733786,UCSC-ENCODE-hg19:wgEncodeEH001038;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000APC] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • Fibroblast NGENC4NG5U6PLE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Fibroblast Histone Show metadata Download track Track metadata identifier NGENC4NG5U6PLE data_source ENCODE Download track Download number_of_intervals 63,279 bp_covered 44,649,343 output_type pseudoreplicated peaks genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id ENCSR000ATG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,679,211 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF401XCZ.bed.gz processed_file_md5 118bdf0f9a5be760d1e2e7266e31e496 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF401XCZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF401XCZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF401XCZ/@@download/ENCFF401XCZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF401XCZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 596e7a30c203ec93fd9e6fb4fae69106 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens fibroblast of dermis NONE and female adult;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH003090,GEO:GSM1003505;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06,2011-02-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=fibroblast of dermis;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002551;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Adult track_name ENCODE Fibroblast (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ATG] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • PC-9 NGENC4XP3XNHYZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq PC-9 Histone Show metadata Download track Track metadata identifier NGENC4XP3XNHYZ data_source ENCODE Download track Download number_of_intervals 63,466 bp_covered 44,854,404 output_type replicated peaks genome_build hg38 cell_type PC-9 biosample_type Cell line biosample_term_id EFO:0002847 tissue_category Lung encode_experiment_id ENCSR491WAP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,720,255 downloaded_date 05/15/2024 release_date 01/21/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF035BWF.bed.gz processed_file_md5 346058c54b86b21e92195a828f4eb9d9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF035BWF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF035BWF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF035BWF/@@download/ENCFF035BWF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF035BWF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0cc9f569d15b76e9ba09aa68529f23e2 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ replicated peaks track_description version=2024;Biosample_summary=Homo sapiens PC-9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE96193;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-23,2016-05-06;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=PC-9;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002847;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Unknown track_name ENCODE PC-9 (repl. 1, 2) Histone ChIP-seq H2AFZ replicated peaks (narrowPeak) [Experiment: ENCSR491WAP] [Histone ChIP-seq peaks]
H2AFZ • Osteoblast NGENC55KPMLS36 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Osteoblast Histone Show metadata Download track Track metadata identifier NGENC55KPMLS36 data_source ENCODE Download track Download number_of_intervals 61,819 bp_covered 32,870,933 output_type pseudoreplicated peaks genome_build hg38 cell_type Osteoblast biosample_type Primary cell biosample_term_id CL:0000062 tissue_category Bone encode_experiment_id ENCSR000APG biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,465,821 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF835UAX.bed.gz processed_file_md5 3dc5fb9d7ddec28b68c2abc5a1266426 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF835UAX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF835UAX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF835UAX/@@download/ENCFF835UAX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF835UAX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 aec7e3e9372f74ea78be72292c91a9c8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens osteoblast;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001042,GEO:GSM733766;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=osteoblast;ENCODE_cell_slims=connective tissue cell;ENCODE_system_slims=skeletal system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000062;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Skeletal life_stage Unknown track_name ENCODE Osteoblast (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000APG] [Histone ChIP-seq peaks]
H2AFZ • Myotube NGENC5X73PALPV • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Myotube Histone Show metadata Download track Track metadata identifier NGENC5X73PALPV data_source ENCODE Download track Download number_of_intervals 78,737 bp_covered 52,444,116 output_type pseudoreplicated peaks genome_build hg38 cell_type Myotube biosample_type In vitro differentiated cells biosample_term_id CL:0002372 tissue_category Skeletal Muscle encode_experiment_id ENCSR000ANU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 2,047,232 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF736ZQB.bed.gz processed_file_md5 6807cdec93e0adbab880979d3bf38570 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF736ZQB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF736ZQB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF736ZQB/@@download/ENCFF736ZQB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF736ZQB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9e3b728bd7090c3d72dc4c1070b11cdb data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens myotube originated from skeletal muscle myoblast;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 22 years;Reference=PMID:32728046;External_resources=GEO:GSM733746,UCSC-ENCODE-hg19:wgEncodeEH001002;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=myotube;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=myotubule,single cell sarcomere;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002372;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Adult track_name ENCODE Myotube (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ANU] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • Myoblast NGENC626V7NLW4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Myoblast Histone Show metadata Download track Track metadata identifier NGENC626V7NLW4 data_source ENCODE Download track Download number_of_intervals 77,851 bp_covered 43,149,449 output_type pseudoreplicated peaks genome_build hg38 cell_type Myoblast biosample_type Primary cell biosample_term_id CL:0000056 tissue_category Skeletal Muscle encode_experiment_id ENCSR000APA biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,880,835 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF483IJX.bed.gz processed_file_md5 afcd5bf78538ef981125bfd04d8078e9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF483IJX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF483IJX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF483IJX/@@download/ENCFF483IJX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF483IJX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9fdc4ddc51a30c9fea01e5c365957636 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens skeletal muscle myoblast male adult (22 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 22 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001036,GEO:GSM733760;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=skeletal muscle myoblast;ENCODE_cell_slims=myoblast,embryonic cell;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=skeletal myoblast;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000515;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Adult track_name ENCODE Myoblast (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000APA] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • OCI-LY7 NGENC6BFKBOZW6 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq OCI-LY7 Histone Show metadata Download track Track metadata identifier NGENC6BFKBOZW6 data_source ENCODE Download track Download number_of_intervals 59,459 bp_covered 62,004,460 output_type pseudoreplicated peaks genome_build hg38 cell_type OCI-LY7 biosample_type Cell line biosample_term_id EFO:0006711 tissue_category Blood encode_experiment_id ENCSR331RGM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,674,603 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF179PMR.bed.gz processed_file_md5 a3f950648330e2e460fb5a0afdaea922 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF179PMR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF179PMR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF179PMR/@@download/ENCFF179PMR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF179PMR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5788b34d943c5b3ef03c35f60c42a6bf data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens OCI-LY7;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 48 years;Reference=PMID:32728046;External_resources=GEO:GSE96122;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=OCI-LY7;ENCODE_cell_slims=B cell,cancer cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0006711;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE OCI-LY7 (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR331RGM] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • OCI-LY3 NGENC6CZB2BYJE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq OCI-LY3 Histone Show metadata Download track Track metadata identifier NGENC6CZB2BYJE data_source ENCODE Download track Download number_of_intervals 60,827 bp_covered 36,692,176 output_type replicated peaks genome_build hg38 cell_type OCI-LY3 biosample_type Cell line biosample_term_id EFO:0006710 tissue_category Blood encode_experiment_id ENCSR629TDG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,596,696 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF039XKZ.bed.gz processed_file_md5 9807322156eaf5ce58ac2ba11dfa38de wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF039XKZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF039XKZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF039XKZ/@@download/ENCFF039XKZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF039XKZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f8529c6119cdf072ce7ba6a4cae1be22 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ replicated peaks track_description version=2024;Biosample_summary=Homo sapiens OCI-LY3;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 52 years;Reference=PMID:32728046;External_resources=GEO:GSE96276;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=OCI-LY3;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=Oci-Ly-3 cell,Oci-Ly-3;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0006710;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE OCI-LY3 (repl. 1, 2) Histone ChIP-seq H2AFZ replicated peaks (narrowPeak) [Experiment: ENCSR629TDG] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • Trophoblast NGENC6D7NGXFGI • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Trophoblast Histone Show metadata Download track Track metadata identifier NGENC6D7NGXFGI data_source ENCODE Download track Download number_of_intervals 35,344 bp_covered 14,153,558 output_type pseudoreplicated peaks genome_build hg38 cell_type Trophoblast biosample_type Primary cell biosample_term_id UBERON:0000088 tissue_category Embryo encode_experiment_id ENCSR485OSV biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 797,141 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF954GSD.bed.gz processed_file_md5 193969beef459de03625e647c9dc349c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF954GSD.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF954GSD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF954GSD/@@download/ENCFF954GSD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF954GSD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0c1cac05fc4174d67c77c14d859f38f6 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens trophoblast cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM908937,GEO:GSM906387;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=trophoblast cell;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=trophoblastic cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000351;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Trophoblast (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR485OSV] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2AFZ • MCF-7 NGENC6FLDZLXMX • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq MCF-7 Histone Show metadata Download track Track metadata identifier NGENC6FLDZLXMX data_source ENCODE Download track Download number_of_intervals 52,884 bp_covered 46,951,093 output_type pseudoreplicated peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR057MWG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,433,160 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF257ZTF.bed.gz processed_file_md5 33b9e397bf8684399cbb38e3a5f19218 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF257ZTF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF257ZTF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF257ZTF/@@download/ENCFF257ZTF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF257ZTF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 74455e0c360aebf51d50a33aa5687979 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE95900;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-02,2015-08-03;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,integumental system;ENCODE_biosample_term_synonyms=MCF7,MCF-7 cell,MCF7 cell;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR057MWG] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • Astrocyte NGENC6IWI4QZX5 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Astrocyte Histone Show metadata Download track Track metadata identifier NGENC6IWI4QZX5 data_source ENCODE Download track Download number_of_intervals 47,684 bp_covered 29,441,997 output_type pseudoreplicated peaks genome_build hg38 cell_type Astrocyte biosample_type Primary cell biosample_term_id CL:0000127 tissue_category Brain encode_experiment_id ENCSR000AQP biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,203,471 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF460TFV.bed.gz processed_file_md5 059d55a707cd2c3e8380e08d1c693135 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF460TFV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF460TFV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF460TFV/@@download/ENCFF460TFV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF460TFV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 af45e03ce2eda9df32f5085d3a3e062b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens astrocyte;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM1003499,UCSC-ENCODE-hg19:wgEncodeEH002397;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06,2011-02-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=astrocyte;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=astrocytic glia;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000127;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Unknown track_name ENCODE Astrocyte (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AQP] [Histone ChIP-seq peaks]
H2AFZ • Hepatocyte NGENC6O5ODIXB6 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Hepatocyte Histone Show metadata Download track Track metadata identifier NGENC6O5ODIXB6 data_source ENCODE Download track Download number_of_intervals 41,120 bp_covered 32,327,210 output_type pseudoreplicated peaks genome_build hg38 cell_type Hepatocyte biosample_type In vitro differentiated cells biosample_term_id CL:0000182 tissue_category Liver encode_experiment_id ENCSR883XRM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,145,867 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF707ZAH.bed.gz processed_file_md5 1c0c60e9bfc445629ea72eb2bd63ba93 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF707ZAH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF707ZAH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF707ZAH/@@download/ENCFF707ZAH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF707ZAH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a315326f5699b92ab0223d07cc0db024 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens hepatocyte originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=SESCC,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE96447;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-19,2016-04-27;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=hepatocyte;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000182;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Embryonic track_name ENCODE Hepatocyte (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR883XRM] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2AFZ • Karpas-422 NGENC6PI3R22NW • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Karpas-422 Histone Show metadata Download track Track metadata identifier NGENC6PI3R22NW data_source ENCODE Download track Download number_of_intervals 41,872 bp_covered 26,167,756 output_type pseudoreplicated peaks genome_build hg38 cell_type Karpas-422 biosample_type Cell line biosample_term_id EFO:0005719 tissue_category Blood encode_experiment_id ENCSR317NQG biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,038,999 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF206QKQ.bed.gz processed_file_md5 80d9d0093e355011bd765685063f44ef wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF206QKQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF206QKQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF206QKQ/@@download/ENCFF206QKQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF206QKQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7c80ed37cd5c8a4327c9b8bab430df35 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens Karpas-422;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 72 years;Reference=PMID:32728046;External_resources=GEO:GSE96113;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Karpas-422;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=Karpas 422 cell,Karpas-422;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005719;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Karpas-422 (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR317NQG] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • PC-3 NGENC6TTIMWEMX • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq PC-3 Histone Show metadata Download track Track metadata identifier NGENC6TTIMWEMX data_source ENCODE Download track Download number_of_intervals 64,067 bp_covered 50,678,119 output_type replicated peaks genome_build hg38 cell_type PC-3 biosample_type Cell line biosample_term_id EFO:0002074 tissue_category Male Reproductive encode_experiment_id ENCSR946QFD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,794,582 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF054VSI.bed.gz processed_file_md5 ca08db91a0e524338ac66661b4e5e54e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF054VSI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF054VSI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF054VSI/@@download/ENCFF054VSI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF054VSI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 75d41629c2d08fcd4228c718f84240a9 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ replicated peaks track_description version=2024;Biosample_summary=Homo sapiens PC-3;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 62 years;Reference=PMID:32728046;External_resources=GEO:GSE96484;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-09,2015-08-03;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=PC-3;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=PC-3 cell,PC3 cell,PC3;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002074;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE PC-3 (repl. 1, 2) Histone ChIP-seq H2AFZ replicated peaks (narrowPeak) [Experiment: ENCSR946QFD] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • Karpas-422 NGENC73N42IKU7 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Karpas-422 Histone Show metadata Download track Track metadata identifier NGENC73N42IKU7 data_source ENCODE Download track Download number_of_intervals 25,680 bp_covered 15,271,119 output_type pseudoreplicated peaks genome_build hg38 cell_type Karpas-422 biosample_type Cell line biosample_term_id EFO:0005719 tissue_category Blood encode_experiment_id ENCSR317NQG biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 609,651 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF893EBW.bed.gz processed_file_md5 23448b05d06fc244d6d4008e0efeeb1c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF893EBW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF893EBW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF893EBW/@@download/ENCFF893EBW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF893EBW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2a5722ceb6fd30f43a543317f4e40cfb data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens Karpas-422;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 72 years;Reference=PMID:32728046;External_resources=GEO:GSE96113;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Karpas-422;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=Karpas 422 cell,Karpas-422;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005719;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Karpas-422 (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR317NQG] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • Keratinocyte NGENC74NUZOUBE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Keratinocyte Histone Show metadata Download track Track metadata identifier NGENC74NUZOUBE data_source ENCODE Download track Download number_of_intervals 81,109 bp_covered 36,171,367 output_type pseudoreplicated peaks genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR000ARL biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,803,934 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF454KPY.bed.gz processed_file_md5 e2b701052debb780158cf89ea6480bc2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF454KPY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF454KPY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF454KPY/@@download/ENCFF454KPY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF454KPY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 799af2805b6339e0e583a42ec6cfcb64 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens keratinocyte female;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002419,GEO:GSM1003488;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06,2011-02-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=keratinized cell of epidermis,malpighian cell;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000312;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Unknown track_name ENCODE Keratinocyte (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ARL] [Histone ChIP-seq peaks]
H2AFZ • MCF-7 NGENC7BIDCP4JW • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq MCF-7 Histone Show metadata Download track Track metadata identifier NGENC7BIDCP4JW data_source ENCODE Download track Download number_of_intervals 49,659 bp_covered 41,923,833 output_type pseudoreplicated peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR057MWG biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,331,658 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF620XIP.bed.gz processed_file_md5 85e5d0f4dffcae2585c987da5bc22fa4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF620XIP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF620XIP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF620XIP/@@download/ENCFF620XIP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF620XIP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 168e46bd0659b79ccaaf4fd5faee1c01 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE95900;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-02,2015-08-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,integumental system;ENCODE_biosample_term_synonyms=MCF7,MCF-7 cell,MCF7 cell;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR057MWG] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • OCI-LY3 NGENC7BWBXPLG5 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq OCI-LY3 Histone Show metadata Download track Track metadata identifier NGENC7BWBXPLG5 data_source ENCODE Download track Download number_of_intervals 32,782 bp_covered 18,850,903 output_type pseudoreplicated peaks genome_build hg38 cell_type OCI-LY3 biosample_type Cell line biosample_term_id EFO:0006710 tissue_category Blood encode_experiment_id ENCSR629TDG biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 809,678 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF531LQY.bed.gz processed_file_md5 6cc3d24f47336f59bf48045a6ba1efbd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF531LQY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF531LQY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF531LQY/@@download/ENCFF531LQY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF531LQY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4c31b235dc28817c6ef8e4c8ce0efa69 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens OCI-LY3;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 52 years;Reference=PMID:32728046;External_resources=GEO:GSE96276;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=OCI-LY3;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=Oci-Ly-3 cell,Oci-Ly-3;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0006710;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE OCI-LY3 (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR629TDG] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • Fibroblast NGENC7GB7VRQMA • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Fibroblast Histone Show metadata Download track Track metadata identifier NGENC7GB7VRQMA data_source ENCODE Download track Download number_of_intervals 53,516 bp_covered 23,776,055 output_type pseudoreplicated peaks genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Lung encode_experiment_id ENCSR000ARP biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,188,995 downloaded_date 06/12/2022 release_date 08/14/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF313PXR.bed.gz processed_file_md5 a5ef55feccf982b25426b43725a46ff9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF313PXR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF313PXR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF313PXR/@@download/ENCFF313PXR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF313PXR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e705363c213e0dc7f67fb1f410d906c4 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002423,GEO:GSM1003530;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06,2011-02-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=fibroblast of lung;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002553;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult, Child track_name ENCODE Fibroblast (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ARP] [Life stage: Adult, Child] [Histone ChIP-seq peaks]
H2AFZ • MM.1S NGENC7JMJK3Q4E • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq MM.1S Histone Show metadata Download track Track metadata identifier NGENC7JMJK3Q4E data_source ENCODE Download track Download number_of_intervals 40,347 bp_covered 27,380,703 output_type pseudoreplicated peaks genome_build hg38 cell_type MM.1S biosample_type Cell line biosample_term_id EFO:0005724 tissue_category Blood encode_experiment_id ENCSR698CKZ biological_replicate 1 technical_replicate 1_1, 1_2, 1_3 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,051,826 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF801WII.bed.gz processed_file_md5 fb6956e6bf57f83f305b919e10042566 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF801WII.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF801WII.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF801WII/@@download/ENCFF801WII.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF801WII.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2cd124dcde53875c6db18a4886927f9e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens MM.1S;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 42 years;Reference=PMID:32728046;External_resources=GEO:GSE96320;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-05,2015-08-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MM.1S;ENCODE_cell_slims=B cell,cancer cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=MM.1 S,MM.1S cell,MM.1-S;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005724;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE MM.1S (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR698CKZ] [Life stage: Adult] [Histone ChIP-seq peaks]