H2AFZ • Fibroblast NGENCSPLA3UKHU • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Fibroblast Histone Show metadata Download track Track metadata identifier NGENCSPLA3UKHU data_source ENCODE Download track Download number_of_intervals 44,361 bp_covered 24,809,649 output_type pseudoreplicated peaks genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id ENCSR000ATG biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,107,857 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF550DGJ.bed.gz processed_file_md5 1f19b7608b3cd015c251dadcbfd4c35a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF550DGJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF550DGJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF550DGJ/@@download/ENCFF550DGJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF550DGJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b6526d9b6406f6e1c995201bc8d1d8ba data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens fibroblast of dermis NONE and female adult;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH003090,GEO:GSM1003505;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06,2011-02-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=fibroblast of dermis;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002551;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Adult track_name ENCODE Fibroblast (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ATG] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • Hepatocyte NGENCSWAWVF3CH • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Hepatocyte Histone Show metadata Download track Track metadata identifier NGENCSWAWVF3CH data_source ENCODE Download track Download number_of_intervals 39,965 bp_covered 31,409,731 output_type replicated peaks genome_build hg38 cell_type Hepatocyte biosample_type In vitro differentiated cells biosample_term_id CL:0000182 tissue_category Liver encode_experiment_id ENCSR883XRM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,118,686 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF801CRV.bed.gz processed_file_md5 4256f84aad46c659351d6c080dbedde5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF801CRV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF801CRV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF801CRV/@@download/ENCFF801CRV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF801CRV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0643d7a5ca38ab3b38a3b43d204584fe data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ replicated peaks track_description version=2024;Biosample_summary=Homo sapiens hepatocyte originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=SESCC,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE96447;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-19,2016-04-27;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=hepatocyte;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000182;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Embryonic track_name ENCODE Hepatocyte (repl. 1, 2) Histone ChIP-seq H2AFZ replicated peaks (narrowPeak) [Experiment: ENCSR883XRM] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2AFZ • Bipolar neuron NGENCT4D6UDMF4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Bipolar neuron Histone Show metadata Download track Track metadata identifier NGENCT4D6UDMF4 data_source ENCODE Download track Download number_of_intervals 113,938 bp_covered 73,723,954 output_type pseudoreplicated peaks genome_build hg38 cell_type Bipolar neuron biosample_type In vitro differentiated cells biosample_term_id CL:0000103 tissue_category Brain encode_experiment_id ENCSR983CSB biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 3,071,277 downloaded_date 07/10/2025 release_date 01/21/2023 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF465AGU.bed.gz processed_file_md5 d363e82c3d4e28d7674c17fb62fc111e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF465AGU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF465AGU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF465AGU/@@download/ENCFF465AGU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF465AGU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 eba5c4b029e5013e016e0d0ed204b955 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 _g/mL doxycycline hyclate for 4 days;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE96505;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-03,2015-08-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=bipolar neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000103;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Bipolar neuron (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR983CSB] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • Loucy NGENCTJNLUDFUF • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Loucy Histone Show metadata Download track Track metadata identifier NGENCTJNLUDFUF data_source ENCODE Download track Download number_of_intervals 54,834 bp_covered 35,130,358 output_type pseudoreplicated peaks genome_build hg38 cell_type Loucy biosample_type Cell line biosample_term_id EFO:0007112 tissue_category Blood encode_experiment_id ENCSR900HAP biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,422,792 downloaded_date 06/12/2022 release_date 10/31/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF175AIK.bed.gz processed_file_md5 ab1cae762338b4044ec04c3e96f45292 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF175AIK.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF175AIK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF175AIK/@@download/ENCFF175AIK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF175AIK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2af3dcfb16fb5ea5becbd5f510f21545 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens Loucy;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 38 years;Reference=PMID:32728046;External_resources=GEO:GSE96460;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-27,2014-11-20;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Loucy;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007112;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Loucy (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR900HAP] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • PC-9 NGENCTPA46O2JU • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq PC-9 Histone Show metadata Download track Track metadata identifier NGENCTPA46O2JU data_source ENCODE Download track Download number_of_intervals 63,681 bp_covered 45,047,588 output_type pseudoreplicated peaks genome_build hg38 cell_type PC-9 biosample_type Cell line biosample_term_id EFO:0002847 tissue_category Lung encode_experiment_id ENCSR491WAP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,721,967 downloaded_date 05/15/2024 release_date 01/21/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF818ILR.bed.gz processed_file_md5 6c6cf4776fd00106290e6a87197df1d1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF818ILR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF818ILR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF818ILR/@@download/ENCFF818ILR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF818ILR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c97da080beb06c73b2c0dd7329349a56 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens PC-9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE96193;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-23,2016-05-06;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=PC-9;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002847;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Unknown track_name ENCODE PC-9 (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR491WAP] [Histone ChIP-seq peaks]
H2AFZ • MM.1S NGENCU5X7ABLD4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq MM.1S Histone Show metadata Download track Track metadata identifier NGENCU5X7ABLD4 data_source ENCODE Download track Download number_of_intervals 39,002 bp_covered 28,821,594 output_type pseudoreplicated peaks genome_build hg38 cell_type MM.1S biosample_type Cell line biosample_term_id EFO:0005724 tissue_category Blood encode_experiment_id ENCSR698CKZ biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,019,014 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF862ZII.bed.gz processed_file_md5 f0a8292474c46e854801432bbdd0e058 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF862ZII.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF862ZII.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF862ZII/@@download/ENCFF862ZII.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF862ZII.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 cf3d8f336774f4301cc21ca57c7c4f2c data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens MM.1S;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 42 years;Reference=PMID:32728046;External_resources=GEO:GSE96320;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-05,2015-08-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MM.1S;ENCODE_cell_slims=B cell,cancer cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=MM.1 S,MM.1S cell,MM.1-S;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005724;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE MM.1S (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR698CKZ] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • HCT116 NGENCUIC4LQBNL • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq HCT116 Histone Show metadata Download track Track metadata identifier NGENCUIC4LQBNL data_source ENCODE Download track Download number_of_intervals 48,664 bp_covered 27,444,959 output_type pseudoreplicated peaks genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR227XNT biological_replicate 1 technical_replicate 1_2 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,145,792 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF178DXJ.bed.gz processed_file_md5 7a8aa162e0c71ebc28e4903f78a1cad4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF178DXJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF178DXJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF178DXJ/@@download/ENCFF178DXJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF178DXJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f6995990e29883cabecf32978180cf03 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens HCT116;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 48 years;Reference=PMID:32728046;External_resources=GEO:GSE95992;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-19,2015-08-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HCT116;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=HCT-116 cell,HCT116 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE HCT116 (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR227XNT] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • HCT116 NGENCUQZF4Q5R5 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq HCT116 Histone Show metadata Download track Track metadata identifier NGENCUQZF4Q5R5 data_source ENCODE Download track Download number_of_intervals 52,933 bp_covered 38,181,149 output_type replicated peaks genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR227XNT biological_replicate 1, 2 technical_replicate 1_2, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,323,282 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF966GGV.bed.gz processed_file_md5 85cc86a06c3ab3b72baa7a2ba4d31d5b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF966GGV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF966GGV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF966GGV/@@download/ENCFF966GGV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF966GGV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 89aa41aef5bf177cd46cf7bc54a15ef7 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ replicated peaks track_description version=2024;Biosample_summary=Homo sapiens HCT116;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 48 years;Reference=PMID:32728046;External_resources=GEO:GSE95992;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-19,2015-08-03;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HCT116;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=HCT-116 cell,HCT116 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE HCT116 (repl. 1, 2) Histone ChIP-seq H2AFZ replicated peaks (narrowPeak) [Experiment: ENCSR227XNT] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • A549 NGENCV3KIJA7PR • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENCV3KIJA7PR data_source ENCODE Download track Download number_of_intervals 67,232 bp_covered 58,523,696 output_type pseudoreplicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000AUH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,860,772 downloaded_date 07/10/2025 release_date 11/01/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF502QOT.bed.gz processed_file_md5 09ee993fdda18c51987a8dc440118a37 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF502QOT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF502QOT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF502QOT/@@download/ENCFF502QOT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF502QOT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 63ce1b100c608cdcd8cb35ae4cc01a5e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 58 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH003117,GEO:GSM1003546;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AUH] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • CD14+ monocyte NGENCV3VTHL6BI • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq CD14+ monocyte Histone Show metadata Download track Track metadata identifier NGENCV3VTHL6BI data_source ENCODE Download track Download number_of_intervals 55,901 bp_covered 44,557,459 output_type pseudoreplicated peaks genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id ENCSR000ASI biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,427,256 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF395DZP.bed.gz processed_file_md5 0da90624a5a60410c4abb24334a2f68c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF395DZP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF395DZP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF395DZP/@@download/ENCFF395DZP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF395DZP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 43a0f8560d9ba301b321085540d5615e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD14-positive monocyte female;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM1003548,UCSC-ENCODE-hg19:wgEncodeEH003066;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=CD14-positive monocyte;ENCODE_cell_slims=leukocyte,myeloid cell,monocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0001054;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD14+ monocyte (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ASI] [Histone ChIP-seq peaks]
H2AFZ • Loucy NGENCV4IL2F5JQ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Loucy Histone Show metadata Download track Track metadata identifier NGENCV4IL2F5JQ data_source ENCODE Download track Download number_of_intervals 74,447 bp_covered 51,320,974 output_type pseudoreplicated peaks genome_build hg38 cell_type Loucy biosample_type Cell line biosample_term_id EFO:0007112 tissue_category Blood encode_experiment_id ENCSR900HAP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 2,003,574 downloaded_date 06/12/2022 release_date 10/31/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF261GGU.bed.gz processed_file_md5 76d7d344c4a7a005b61540489f112e37 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF261GGU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF261GGU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF261GGU/@@download/ENCFF261GGU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF261GGU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1de0638b25c208911c6caa69bee48b31 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens Loucy;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 38 years;Reference=PMID:32728046;External_resources=GEO:GSE96460;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-27,2014-11-20;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=Loucy;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007112;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Loucy (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR900HAP] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • H9 NGENCVJBP7DHPC • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENCVJBP7DHPC data_source ENCODE Download track Download number_of_intervals 9,249 bp_covered 2,184,730 output_type pseudoreplicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR265EDV biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 193,515 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF055SWP.bed.gz processed_file_md5 1dd1d4c0cff8170d904defd591da1aa8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF055SWP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF055SWP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF055SWP/@@download/ENCFF055SWP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF055SWP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 59c654d638020ed78acc2a2f7a5a6690 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSM807391;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR265EDV] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2AFZ • H1-hESC NGENCVMKD3AIYE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGENCVMKD3AIYE data_source ENCODE Download track Download number_of_intervals 29,017 bp_covered 8,203,915 output_type pseudoreplicated peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR571IIS biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 603,221 downloaded_date 06/12/2022 release_date 12/10/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF456BLH.bed.gz processed_file_md5 4805aef2ef9349c63618b20bae8989e4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF456BLH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF456BLH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF456BLH/@@download/ENCFF456BLH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF456BLH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3ccfc0101e8d8ceaa728cb587283eb18 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM908938;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR571IIS] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2AFZ • Fibroblast NGENCVNRAXWJKY • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Fibroblast Histone Show metadata Download track Track metadata identifier NGENCVNRAXWJKY data_source ENCODE Download track Download number_of_intervals 56,564 bp_covered 40,192,523 output_type pseudoreplicated peaks genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id ENCSR000ATG biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,450,348 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF187TCY.bed.gz processed_file_md5 2101bf8a09883639af3372241eb40c3b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF187TCY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF187TCY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF187TCY/@@download/ENCFF187TCY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF187TCY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ec218acfe3b3d07b813f9190cce6799b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens fibroblast of dermis NONE and female adult;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH003090,GEO:GSM1003505;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06,2011-02-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=fibroblast of dermis;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002551;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Adult track_name ENCODE Fibroblast (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ATG] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • SK-N-SH NGENCVQ5FQBP4C • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq SK-N-SH Histone Show metadata Download track Track metadata identifier NGENCVQ5FQBP4C data_source ENCODE Download track Download number_of_intervals 63,798 bp_covered 44,314,686 output_type pseudoreplicated peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR366QMB biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,711,898 downloaded_date 05/15/2024 release_date 01/21/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF371EBV.bed.gz processed_file_md5 9da13f4df351e40963637c693956f69f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF371EBV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF371EBV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF371EBV/@@download/ENCFF371EBV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF371EBV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e22ac078e1664fece14a199422e03826 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 4 years;Reference=PMID:32728046;External_resources=GEO:GSE96137;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-19,2015-08-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR366QMB] [Life stage: Child] [Histone ChIP-seq peaks]
H2AFZ • Loucy NGENCVXT7V5MKY • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Loucy Histone Show metadata Download track Track metadata identifier NGENCVXT7V5MKY data_source ENCODE Download track Download number_of_intervals 51,218 bp_covered 31,752,284 output_type pseudoreplicated peaks genome_build hg38 cell_type Loucy biosample_type Cell line biosample_term_id EFO:0007112 tissue_category Blood encode_experiment_id ENCSR900HAP biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,325,715 downloaded_date 06/12/2022 release_date 10/31/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF573XBJ.bed.gz processed_file_md5 003489555cabbf96d3fcf96b3a107b5f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF573XBJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF573XBJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF573XBJ/@@download/ENCFF573XBJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF573XBJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 09942d50f12cd87a339b4742ac45f0aa data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens Loucy;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 38 years;Reference=PMID:32728046;External_resources=GEO:GSE96460;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-27,2014-11-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Loucy;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007112;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Loucy (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR900HAP] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • MM.1S NGENCVXVH7X23F • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq MM.1S Histone Show metadata Download track Track metadata identifier NGENCVXVH7X23F data_source ENCODE Download track Download number_of_intervals 52,176 bp_covered 39,557,325 output_type pseudoreplicated peaks genome_build hg38 cell_type MM.1S biosample_type Cell line biosample_term_id EFO:0005724 tissue_category Blood encode_experiment_id ENCSR698CKZ biological_replicate 1, 2 technical_replicate 1_1, 1_2, 1_3, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,426,458 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF284SFN.bed.gz processed_file_md5 6d229144ccedd983b0d5b5058c7600a7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF284SFN.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF284SFN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF284SFN/@@download/ENCFF284SFN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF284SFN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6df53d746b44b929e71d998b04e005ce data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens MM.1S;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 42 years;Reference=PMID:32728046;External_resources=GEO:GSE96320;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-05,2015-08-03;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=MM.1S;ENCODE_cell_slims=B cell,cancer cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=MM.1 S,MM.1S cell,MM.1-S;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005724;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE MM.1S (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR698CKZ] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • DOHH2 NGENCW77SAGF2I • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq DOHH2 Histone Show metadata Download track Track metadata identifier NGENCW77SAGF2I data_source ENCODE Download track Download number_of_intervals 61,534 bp_covered 50,901,514 output_type pseudoreplicated peaks genome_build hg38 cell_type DOHH2 biosample_type Cell line biosample_term_id EFO:0002167 tissue_category Blood encode_experiment_id ENCSR859FGW biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,606,321 downloaded_date 06/12/2022 release_date 10/31/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF414LUQ.bed.gz processed_file_md5 439c7c86687f75e7014a3ec30f0a592b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF414LUQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF414LUQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF414LUQ/@@download/ENCFF414LUQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF414LUQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ef4da36345e73cd48d2b8db2ba1c4b74 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens DOHH2;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 60 years;Reference=PMID:32728046;External_resources=GEO:GSE96427;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-07,2014-07-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=DOHH2;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002167;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE DOHH2 (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR859FGW] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • DND-41 NGENCW7GREXDCI • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq DND-41 Histone Show metadata Download track Track metadata identifier NGENCW7GREXDCI data_source ENCODE Download track Download number_of_intervals 50,233 bp_covered 35,324,532 output_type replicated peaks genome_build hg38 cell_type DND-41 biosample_type Cell line biosample_term_id EFO:0007074 tissue_category Blood encode_experiment_id ENCSR000AQV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,345,009 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF397ANX.bed.gz processed_file_md5 07812f29885952714302c24b1771c1af wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF397ANX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF397ANX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF397ANX/@@download/ENCFF397ANX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF397ANX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 821064c4895fa3fd507707dc6a9f2c75 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ replicated peaks track_description version=2024;Biosample_summary=Homo sapiens DND-41;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 13 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002403,GEO:GSM1003465;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=DND-41;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=ACC525;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007074;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Child track_name ENCODE DND-41 (repl. 1, 2) Histone ChIP-seq H2AFZ replicated peaks (narrowPeak) [Experiment: ENCSR000AQV] [Life stage: Child] [Histone ChIP-seq peaks]
H2AFZ • OCI-LY7 NGENCWAPWG6KUZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq OCI-LY7 Histone Show metadata Download track Track metadata identifier NGENCWAPWG6KUZ data_source ENCODE Download track Download number_of_intervals 54,670 bp_covered 66,683,681 output_type pseudoreplicated peaks genome_build hg38 cell_type OCI-LY7 biosample_type Cell line biosample_term_id EFO:0006711 tissue_category Blood encode_experiment_id ENCSR331RGM biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,550,478 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF278MQV.bed.gz processed_file_md5 21e67a120ff8ef48c5375bc9c34e2442 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF278MQV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF278MQV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF278MQV/@@download/ENCFF278MQV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF278MQV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c85c6ba6416f42a242921e73581fe31d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens OCI-LY7;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 48 years;Reference=PMID:32728046;External_resources=GEO:GSE96122;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=OCI-LY7;ENCODE_cell_slims=B cell,cancer cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0006711;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE OCI-LY7 (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR331RGM] [Life stage: Adult] [Histone ChIP-seq peaks]