H2AFZ • Neural cell NGENCWFC2XCVKJ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neural cell Histone Show metadata Download track Track metadata identifier NGENCWFC2XCVKJ data_source ENCODE Download track Download number_of_intervals 27,799 bp_covered 16,686,129 output_type pseudoreplicated peaks genome_build hg38 cell_type Neural cell biosample_type In vitro differentiated cells biosample_term_id CL:0002319 tissue_category Brain encode_experiment_id ENCSR816JBG biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 662,874 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF940ABU.bed.gz processed_file_md5 0cca0d40edb4ad053dbf6348a5dde21d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF940ABU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF940ABU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF940ABU/@@download/ENCFF940ABU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF940ABU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 322ebdd92a602a767be82bfd21dd4109 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neural cell originated from H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE96393;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11,2016-10-25;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neural cell;ENCODE_cell_slims=neural cell;ENCODE_system_slims=peripheral nervous system,central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002319;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Embryonic track_name ENCODE Neural cell (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR816JBG] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2AFZ • Keratinocyte NGENCWGAFGAWQK • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Keratinocyte Histone Show metadata Download track Track metadata identifier NGENCWGAFGAWQK data_source ENCODE Download track Download number_of_intervals 74,204 bp_covered 34,102,143 output_type pseudoreplicated peaks genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR000ARL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,686,603 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF536XXP.bed.gz processed_file_md5 c33c9d77fef1343202f13adf8d0a24d4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF536XXP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF536XXP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF536XXP/@@download/ENCFF536XXP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF536XXP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 bd931d2a6da78f7e062f302927a13380 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens keratinocyte female;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002419,GEO:GSM1003488;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06,2011-02-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=keratinized cell of epidermis,malpighian cell;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000312;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Unknown track_name ENCODE Keratinocyte (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ARL] [Histone ChIP-seq peaks]
H2AFZ • Smooth muscle cell NGENCWHUC7ZZO3 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Smooth muscle cell Histone Show metadata Download track Track metadata identifier NGENCWHUC7ZZO3 data_source ENCODE Download track Download number_of_intervals 74,256 bp_covered 55,048,763 output_type pseudoreplicated peaks genome_build hg38 cell_type Smooth muscle cell biosample_type In vitro differentiated cells biosample_term_id CL:0000192 tissue_category Muscle encode_experiment_id ENCSR301VIW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,953,677 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF310ZIQ.bed.gz processed_file_md5 0fad4074a5d957f311bd6d0a0b569a2a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF310ZIQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF310ZIQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF310ZIQ/@@download/ENCFF310ZIQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF310ZIQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9b3e501ea3c07353bf4485be3576fcc6 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens smooth muscle cell originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=SESCC,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE96109;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-06,2016-04-27;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=smooth muscle cell;ENCODE_cell_slims=smooth muscle cell;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=smooth muscle fiber,myocytes, smooth muscle,SMCs;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000192;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Embryonic track_name ENCODE Smooth muscle cell (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR301VIW] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2AFZ • KMS-11 NGENCWIGSXFKKG • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq KMS-11 Histone Show metadata Download track Track metadata identifier NGENCWIGSXFKKG data_source ENCODE Download track Download number_of_intervals 34,014 bp_covered 38,664,225 output_type replicated peaks genome_build hg38 cell_type KMS-11 biosample_type Cell line biosample_term_id EFO:0005694 tissue_category Immune encode_experiment_id ENCSR499RMZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 929,926 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF744YDX.bed.gz processed_file_md5 97713d8a5c306f0d136171a9bde2e13b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF744YDX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF744YDX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF744YDX/@@download/ENCFF744YDX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF744YDX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e4e35906af0501f16a94f93de74e3ac7 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ replicated peaks track_description version=2024;Biosample_summary=Homo sapiens KMS-11;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 67 years;Reference=PMID:32728046;External_resources=GEO:GSE96196;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-01,2015-08-03;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=KMS-11;ENCODE_cell_slims=hematopoietic cell;ENCODE_system_slims=skeletal system;ENCODE_biosample_term_synonyms=KMS11,KMS_11;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005694;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE KMS-11 (repl. 1, 2) Histone ChIP-seq H2AFZ replicated peaks (narrowPeak) [Experiment: ENCSR499RMZ] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • Keratinocyte NGENCWQUAVK7OU • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Keratinocyte Histone Show metadata Download track Track metadata identifier NGENCWQUAVK7OU data_source ENCODE Download track Download number_of_intervals 67,088 bp_covered 32,508,352 output_type replicated peaks genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR000ARL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,545,865 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF267WGE.bed.gz processed_file_md5 99d511e8b26090d3a3b16e43a4afd207 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF267WGE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF267WGE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF267WGE/@@download/ENCFF267WGE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF267WGE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 94863fb31bf936580865c7e5905d080b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ replicated peaks track_description version=2024;Biosample_summary=Homo sapiens keratinocyte female;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002419,GEO:GSM1003488;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06,2011-02-10;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=keratinized cell of epidermis,malpighian cell;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000312;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Unknown track_name ENCODE Keratinocyte (repl. 1, 2) Histone ChIP-seq H2AFZ replicated peaks (narrowPeak) [Experiment: ENCSR000ARL] [Histone ChIP-seq peaks]
H2AFZ • GM12878 NGENCWSCP3WBKX • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq GM12878 Histone Show metadata Download track Track metadata identifier NGENCWSCP3WBKX data_source ENCODE Download track Download number_of_intervals 56,280 bp_covered 31,916,207 output_type pseudoreplicated peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000AOV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,309,939 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF244VAA.bed.gz processed_file_md5 e8fd95fc49c309de54df5bd7b97d14e9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF244VAA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF244VAA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF244VAA/@@download/ENCFF244VAA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF244VAA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 44754928ab339e2870f84d21f4d0b51d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM733767,UCSC-ENCODE-hg19:wgEncodeEH001033;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AOV] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • GM23248 NGENCX3DXDH75Q • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq GM23248 Histone Show metadata Download track Track metadata identifier NGENCX3DXDH75Q data_source ENCODE Download track Download number_of_intervals 77,366 bp_covered 73,873,403 output_type pseudoreplicated peaks genome_build hg38 cell_type GM23248 biosample_type Cell line biosample_term_id EFO:0005723 tissue_category Skin encode_experiment_id ENCSR397TUH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 2,236,027 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF625MDO.bed.gz processed_file_md5 82e13f921329ae686e779dd8d037dc92 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF625MDO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF625MDO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF625MDO/@@download/ENCFF625MDO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF625MDO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 09767b025dd8fd6abc54d0b0fdf99145 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens GM23248;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE96153;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-04,2015-08-03;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM23248;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=GM23248 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005723;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Adult track_name ENCODE GM23248 (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR397TUH] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • DND-41 NGENCX7UV47A5D • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq DND-41 Histone Show metadata Download track Track metadata identifier NGENCX7UV47A5D data_source ENCODE Download track Download number_of_intervals 45,894 bp_covered 28,502,218 output_type pseudoreplicated peaks genome_build hg38 cell_type DND-41 biosample_type Cell line biosample_term_id EFO:0007074 tissue_category Blood encode_experiment_id ENCSR000AQV biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,201,134 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF898AKY.bed.gz processed_file_md5 d29f262843a46c148b4805d435040d2c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF898AKY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF898AKY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF898AKY/@@download/ENCFF898AKY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF898AKY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3469cdc24917246495aa62d8559a915d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens DND-41;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 13 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002403,GEO:GSM1003465;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=DND-41;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=ACC525;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007074;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Child track_name ENCODE DND-41 (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AQV] [Life stage: Child] [Histone ChIP-seq peaks]
H2AFZ • OCI-LY7 NGENCXEBHVPFJF • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq OCI-LY7 Histone Show metadata Download track Track metadata identifier NGENCXEBHVPFJF data_source ENCODE Download track Download number_of_intervals 46,773 bp_covered 52,761,923 output_type replicated peaks genome_build hg38 cell_type OCI-LY7 biosample_type Cell line biosample_term_id EFO:0006711 tissue_category Blood encode_experiment_id ENCSR331RGM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,333,444 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF693XLF.bed.gz processed_file_md5 e731d8c5718df79544f452bd46e61a0a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF693XLF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF693XLF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF693XLF/@@download/ENCFF693XLF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF693XLF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1eb48cfa32758a667768a4196c0f136f data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ replicated peaks track_description version=2024;Biosample_summary=Homo sapiens OCI-LY7;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 48 years;Reference=PMID:32728046;External_resources=GEO:GSE96122;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=OCI-LY7;ENCODE_cell_slims=B cell,cancer cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0006711;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE OCI-LY7 (repl. 1, 2) Histone ChIP-seq H2AFZ replicated peaks (narrowPeak) [Experiment: ENCSR331RGM] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • PC-9 NGENCXM3FA5ATO • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq PC-9 Histone Show metadata Download track Track metadata identifier NGENCXM3FA5ATO data_source ENCODE Download track Download number_of_intervals 44,963 bp_covered 27,353,739 output_type pseudoreplicated peaks genome_build hg38 cell_type PC-9 biosample_type Cell line biosample_term_id EFO:0002847 tissue_category Lung encode_experiment_id ENCSR491WAP biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,189,775 downloaded_date 05/15/2024 release_date 01/21/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF994KPL.bed.gz processed_file_md5 16ee5ad0d2366aff4674b5db00d7cf2e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF994KPL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF994KPL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF994KPL/@@download/ENCFF994KPL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF994KPL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b337329c5c202f1accf32d291f6ae76b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens PC-9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE96193;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-23,2016-05-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=PC-9;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002847;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Unknown track_name ENCODE PC-9 (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR491WAP] [Histone ChIP-seq peaks]
H2AFZ • Karpas-422 NGENCXNIDZFUOE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Karpas-422 Histone Show metadata Download track Track metadata identifier NGENCXNIDZFUOE data_source ENCODE Download track Download number_of_intervals 45,698 bp_covered 31,993,750 output_type replicated peaks genome_build hg38 cell_type Karpas-422 biosample_type Cell line biosample_term_id EFO:0005719 tissue_category Blood encode_experiment_id ENCSR317NQG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,183,214 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF922OGF.bed.gz processed_file_md5 4cd67d6d32b64f04973a41454bc53a35 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF922OGF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF922OGF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF922OGF/@@download/ENCFF922OGF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF922OGF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fdc5c10e04757d3b2a838183a1d2d046 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ replicated peaks track_description version=2024;Biosample_summary=Homo sapiens Karpas-422;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 72 years;Reference=PMID:32728046;External_resources=GEO:GSE96113;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Karpas-422;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=Karpas 422 cell,Karpas-422;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005719;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Karpas-422 (repl. 1, 2) Histone ChIP-seq H2AFZ replicated peaks (narrowPeak) [Experiment: ENCSR317NQG] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • GM23338 NGENCXRMIDKE36 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq GM23338 Histone Show metadata Download track Track metadata identifier NGENCXRMIDKE36 data_source ENCODE Download track Download number_of_intervals 80,260 bp_covered 49,045,507 output_type pseudoreplicated peaks genome_build hg38 cell_type GM23338 biosample_type Cell line biosample_term_id EFO:0007950 tissue_category iPSC encode_experiment_id ENCSR908FQA biological_replicate 1 technical_replicate 1_1, 1_2 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,823,471 downloaded_date 06/12/2022 release_date 03/03/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF444QMK.bed.gz processed_file_md5 594c925e5ac9a12dd07f540333339b0f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF444QMK.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF444QMK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF444QMK/@@download/ENCFF444QMK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF444QMK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ee76633f1b5635c51eee1c00b9a85477 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens GM23338 originated from GM23248;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE96465;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-14,2016-05-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM23338;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007950;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Stem Cell life_stage Adult track_name ENCODE GM23338 (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR908FQA] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • HeLa-S3 NGENCXTGAGXBHL • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq HeLa-S3 Histone Show metadata Download track Track metadata identifier NGENCXTGAGXBHL data_source ENCODE Download track Download number_of_intervals 54,290 bp_covered 24,399,700 output_type pseudoreplicated peaks genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000AQN biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,232,214 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF368NBS.bed.gz processed_file_md5 5caee2353fac9112800d917bc0ee13d5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF368NBS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF368NBS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF368NBS/@@download/ENCFF368NBS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF368NBS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c6c6b5e1130a840e990ab9c88c9b6580 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens HeLa-S3;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 31 years;Reference=PMID:32728046;External_resources=GEO:GSM1003483,UCSC-ENCODE-hg19:wgEncodeEH002395;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06,2011-02-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE HeLa-S3 (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AQN] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • IMR-90 NGENCXXALJXAUD • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGENCXXALJXAUD data_source ENCODE Download track Download number_of_intervals 96,093 bp_covered 49,719,110 output_type pseudoreplicated peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id ENCSR124DYB biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 2,478,600 downloaded_date 06/12/2022 release_date 12/10/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF110PEU.bed.gz processed_file_md5 0c009d75e3487d7826d70cebee28906c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF110PEU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF110PEU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF110PEU/@@download/ENCFF110PEU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF110PEU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c35118fcb1c6627529ff20712131a215 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens IMR-90;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM818008,GEO:GSM818007;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=IMR90;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Embryonic track_name ENCODE IMR-90 (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR124DYB] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2AFZ • Myoblast NGENCXYD4YQYKK • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Myoblast Histone Show metadata Download track Track metadata identifier NGENCXYD4YQYKK data_source ENCODE Download track Download number_of_intervals 52,495 bp_covered 25,434,230 output_type pseudoreplicated peaks genome_build hg38 cell_type Myoblast biosample_type Primary cell biosample_term_id CL:0000056 tissue_category Skeletal Muscle encode_experiment_id ENCSR000APA biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,269,138 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF699GWB.bed.gz processed_file_md5 14375a0bb0b1ea37663c42a86d6ffeae wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF699GWB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF699GWB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF699GWB/@@download/ENCFF699GWB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF699GWB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 68c5fcc4928071a580ee13c430f3898e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens skeletal muscle myoblast male adult (22 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 22 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001036,GEO:GSM733760;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=skeletal muscle myoblast;ENCODE_cell_slims=myoblast,embryonic cell;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=skeletal myoblast;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000515;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Adult track_name ENCODE Myoblast (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000APA] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • Astrocyte NGENCYBHZMWHWR • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Astrocyte Histone Show metadata Download track Track metadata identifier NGENCYBHZMWHWR data_source ENCODE Download track Download number_of_intervals 56,779 bp_covered 27,553,773 output_type pseudoreplicated peaks genome_build hg38 cell_type Astrocyte biosample_type Primary cell biosample_term_id CL:0000127 tissue_category Brain encode_experiment_id ENCSR000AQP biological_replicate 1 technical_replicate 1_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,435,507 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF533JZX.bed.gz processed_file_md5 0bc9fc9cafe3f17822f753de24753ae5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF533JZX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF533JZX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF533JZX/@@download/ENCFF533JZX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF533JZX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 11bd63b68f83defd30215f2ef67db7ec data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens astrocyte;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM1003499,UCSC-ENCODE-hg19:wgEncodeEH002397;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06,2011-02-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=astrocyte;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=astrocytic glia;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000127;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Unknown track_name ENCODE Astrocyte (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AQP] [Histone ChIP-seq peaks]
H2AFZ • DOHH2 NGENCYQJ7WOYMO • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq DOHH2 Histone Show metadata Download track Track metadata identifier NGENCYQJ7WOYMO data_source ENCODE Download track Download number_of_intervals 75,030 bp_covered 66,843,276 output_type replicated peaks genome_build hg38 cell_type DOHH2 biosample_type Cell line biosample_term_id EFO:0002167 tissue_category Blood encode_experiment_id ENCSR859FGW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 2,048,067 downloaded_date 06/12/2022 release_date 10/31/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF836LTA.bed.gz processed_file_md5 297638d3acbdce4eafcce25ac0d6d285 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF836LTA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF836LTA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF836LTA/@@download/ENCFF836LTA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF836LTA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 14d8330ebbbbd99b549da084993860e1 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ replicated peaks track_description version=2024;Biosample_summary=Homo sapiens DOHH2;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 60 years;Reference=PMID:32728046;External_resources=GEO:GSE96427;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-07,2014-07-11;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=DOHH2;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002167;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE DOHH2 (repl. 1, 2) Histone ChIP-seq H2AFZ replicated peaks (narrowPeak) [Experiment: ENCSR859FGW] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • MCF-7 NGENCZ3D5DP3AH • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq MCF-7 Histone Show metadata Download track Track metadata identifier NGENCZ3D5DP3AH data_source ENCODE Download track Download number_of_intervals 34,703 bp_covered 30,342,040 output_type pseudoreplicated peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR057MWG biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 911,022 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF522PTR.bed.gz processed_file_md5 1fe4041f959ee98126f4f442dfe95ed4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF522PTR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF522PTR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF522PTR/@@download/ENCFF522PTR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF522PTR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6e443d9d3a8b6b57d72426bcfe2f5ce5 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE95900;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-02,2015-08-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,integumental system;ENCODE_biosample_term_synonyms=MCF7,MCF-7 cell,MCF7 cell;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR057MWG] [Life stage: Adult] [Histone ChIP-seq peaks]
H2AFZ • PC-9 NGENCZ6JBFFQ27 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq PC-9 Histone Show metadata Download track Track metadata identifier NGENCZ6JBFFQ27 data_source ENCODE Download track Download number_of_intervals 42,745 bp_covered 34,605,476 output_type pseudoreplicated peaks genome_build hg38 cell_type PC-9 biosample_type Cell line biosample_term_id EFO:0002847 tissue_category Lung encode_experiment_id ENCSR491WAP biological_replicate 2 technical_replicate 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,181,412 downloaded_date 05/15/2024 release_date 01/21/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF908IGU.bed.gz processed_file_md5 b088424dd74441983fa2662b778887cc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF908IGU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF908IGU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF908IGU/@@download/ENCFF908IGU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF908IGU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ab4318c963bfe6d661ddb80fd8f2a088 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens PC-9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE96193;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-23,2016-05-06;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=PC-9;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002847;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Unknown track_name ENCODE PC-9 (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR491WAP] [Histone ChIP-seq peaks]
H2AFZ • Karpas-422 NGENCZEYZM5ZBM • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Karpas-422 Histone Show metadata Download track Track metadata identifier NGENCZEYZM5ZBM data_source ENCODE Download track Download number_of_intervals 51,548 bp_covered 34,772,673 output_type pseudoreplicated peaks genome_build hg38 cell_type Karpas-422 biosample_type Cell line biosample_term_id EFO:0005719 tissue_category Blood encode_experiment_id ENCSR317NQG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2AFZ assay Histone ChIP-seq file_format bed narrowPeak file_size 1,327,242 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF731LOD.bed.gz processed_file_md5 ba286761ff74382ebe0a87b88e03b529 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF731LOD.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF731LOD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF731LOD/@@download/ENCFF731LOD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF731LOD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 cd3eaf6a77af5c220a2b3a450b60c892 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens Karpas-422;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 72 years;Reference=PMID:32728046;External_resources=GEO:GSE96113;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=Karpas-422;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=Karpas 422 cell,Karpas-422;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005719;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Karpas-422 (repl. 1, 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR317NQG] [Life stage: Adult] [Histone ChIP-seq peaks]