H2BK12ac • IMR-90 NGRMPVPOWMJ3VD • ROADMAP [lifted]25693563 ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGRMPVPOWMJ3VD data_source ROADMAP-lifted Download track Download number_of_intervals 255,884 bp_covered 62,507,120 output_type peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H2BK12ac assay ChIP-seq file_format bed narrowPeak-lifted file_size 8,521,717 downloaded_date 08/15/2018 release_date 11/30/2014 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSD.IMR90.H2BK12ac.YL18.narrowPeak.lifted.bed.gz processed_file_md5 47981916a3f8a8591861a468314f64d6 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSD.IMR90.H2BK12ac.YL18.narrowPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/UCSD.IMR90.H2BK12ac.YL18.narrowPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/narrowPeak/UCSD.IMR90.H2BK12ac.YL18.narrowPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/narrowpeak/UCSD.IMR90.H2BK12ac.YL18.narrowPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/narrowpeak/ raw_file_md5 84177ec892f066467f3c8e1359302c4e data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H2BK12ac peaks track_description version=2015;Original_cell_type=IMR 90;Donor=YL18;schema=BED3+10;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=yes system_category Respiratory life_stage Unknown track_name ROADMAP-lifted IMR-90 ChIP-seq H2BK12ac-histone-mark peaks (narrowPeak-lifted) [Histone ChIP-seq peaks]
H2BK12ac • Neuronal progenitor cell NGRMPXTLSDZ4CG • ROADMAP [lifted]25693563 ChIP-seq Neuronal progenitor cell Histone Show metadata Download track Track metadata identifier NGRMPXTLSDZ4CG data_source ROADMAP-lifted Download track Download number_of_intervals 817,200 bp_covered 704,000,906 output_type peaks genome_build hg38 cell_type Neuronal progenitor cell biosample_type In vitro differentiated cells biosample_term_id CL:0000047 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H2BK12ac assay ChIP-seq file_format bed broadPeak-lifted file_size 26,620,943 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1_Derived_Neuronal_Progenitor_Cultured_Cells.H2BK12ac.AK249.broadPeak.lifted.bed.gz processed_file_md5 eb5a1ac04a9bc7569aea14c4c5668100 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1_Derived_Neuronal_Progenitor_Cultured_Cells.H2BK12ac.AK249.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1_Derived_Neuronal_Progenitor_Cultured_Cells.H2BK12ac.AK249.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/UCSD.H1_Derived_Neuronal_Progenitor_Cultured_Cells.H2BK12ac.AK249.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/UCSD.H1_Derived_Neuronal_Progenitor_Cultured_Cells.H2BK12ac.AK249.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 bed2c27cfd73613b5539e177112f2c0f data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H2BK12ac peaks track_description version=2015;Original_cell_type=H1 Derived Neuronal Progenitor Cultured Cells;Donor=AK249;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Stem Cell life_stage Embryonic track_name ROADMAP-lifted Neuronal progenitor cell ChIP-seq H2BK12ac-histone-mark peaks (broadPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK12ac • H1-hESC NGRMPXW3TMOLBR • ROADMAP [lifted]25693563 ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGRMPXW3TMOLBR data_source ROADMAP-lifted Download track Download number_of_intervals 168,583 bp_covered 274,028,228 output_type peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H2BK12ac assay ChIP-seq file_format bed gappedPeak-lifted file_size 8,250,428 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/28/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H1.H2BK12ac.YL93.gappedPeak.lifted.bed.gz processed_file_md5 3d20fe53f94b84dcaef6a3e31b6f4806 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H1.H2BK12ac.YL93.gappedPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H1.H2BK12ac.YL93.gappedPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/gappedPeak/UCSD.H1.H2BK12ac.YL93.gappedPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/gappedpeak/UCSD.H1.H2BK12ac.YL93.gappedPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/gappedpeak/ raw_file_md5 eb7d7398de7718f221c971dd5023e239 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H2BK12ac peaks track_description version=2015;Original_cell_type=H1;Donor=YL93;schema=BED3+15;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP-lifted H1-hESC ChIP-seq H2BK12ac-histone-mark peaks (gappedPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK12ac • H1-hESC NGRMPZBSWSBCWI • ROADMAP [lifted]25693563 ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGRMPZBSWSBCWI data_source ROADMAP-lifted Download track Download number_of_intervals 152,216 bp_covered 26,164,225 output_type peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H2BK12ac assay ChIP-seq file_format bed narrowPeak-lifted file_size 4,418,837 downloaded_date 08/15/2018 release_date 11/30/2014 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/UCSD.H1.H2BK12ac.SAK203.narrowPeak.lifted.bed.gz processed_file_md5 cca6d369d0f195da4c73c163d69fdf32 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/UCSD.H1.H2BK12ac.SAK203.narrowPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/UCSD.H1.H2BK12ac.SAK203.narrowPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/narrowPeak/UCSD.H1.H2BK12ac.SAK203.narrowPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/narrowpeak/UCSD.H1.H2BK12ac.SAK203.narrowPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/narrowpeak/ raw_file_md5 f254b6ffcdb25387a39150d311b47544 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H2BK12ac peaks track_description version=2015;Original_cell_type=H1;Donor=SAK203;schema=BED3+10;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP-lifted H1-hESC ChIP-seq H2BK12ac-histone-mark peaks (narrowPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK12ac • Neuronal progenitor cell NGRMPZMUESUJSO • ROADMAP [lifted]25693563 ChIP-seq Neuronal progenitor cell Histone Show metadata Download track Track metadata identifier NGRMPZMUESUJSO data_source ROADMAP-lifted Download track Download number_of_intervals 116,892 bp_covered 250,201,997 output_type peaks genome_build hg38 cell_type Neuronal progenitor cell biosample_type In vitro differentiated cells biosample_term_id CL:0000047 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H2BK12ac assay ChIP-seq file_format bed gappedPeak-lifted file_size 5,915,727 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/28/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H1_Derived_Neuronal_Progenitor_Cultured_Cells.H2BK12ac.AK249.gappedPeak.lifted.bed.gz processed_file_md5 58fd8b1177bfc702e4405341623a4b5c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H1_Derived_Neuronal_Progenitor_Cultured_Cells.H2BK12ac.AK249.gappedPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H1_Derived_Neuronal_Progenitor_Cultured_Cells.H2BK12ac.AK249.gappedPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/gappedPeak/UCSD.H1_Derived_Neuronal_Progenitor_Cultured_Cells.H2BK12ac.AK249.gappedPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/gappedpeak/UCSD.H1_Derived_Neuronal_Progenitor_Cultured_Cells.H2BK12ac.AK249.gappedPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/gappedpeak/ raw_file_md5 4cfa665c118280f8d524292712d627c1 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H2BK12ac peaks track_description version=2015;Original_cell_type=H1 Derived Neuronal Progenitor Cultured Cells;Donor=AK249;schema=BED3+15;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Stem Cell life_stage Embryonic track_name ROADMAP-lifted Neuronal progenitor cell ChIP-seq H2BK12ac-histone-mark peaks (gappedPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK12ac • Mesenchymal stem cell NGRMPZOCG26BVA • ROADMAP [lifted]25693563 ChIP-seq Mesenchymal stem cell Histone Show metadata Download track Track metadata identifier NGRMPZOCG26BVA data_source ROADMAP-lifted Download track Download number_of_intervals 141,265 bp_covered 308,444,394 output_type peaks genome_build hg38 cell_type Mesenchymal stem cell biosample_type Stem cell biosample_term_id CL:0000134 tissue_category Connective Tissue encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H2BK12ac assay ChIP-seq file_format bed gappedPeak-lifted file_size 7,421,461 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/28/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H1_Derived_Mesenchymal_Stem_Cells.H2BK12ac.AK270.gappedPeak.lifted.bed.gz processed_file_md5 4983ef28c55ac3d2e2b6ea51fe2ea446 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H1_Derived_Mesenchymal_Stem_Cells.H2BK12ac.AK270.gappedPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H1_Derived_Mesenchymal_Stem_Cells.H2BK12ac.AK270.gappedPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/gappedPeak/UCSD.H1_Derived_Mesenchymal_Stem_Cells.H2BK12ac.AK270.gappedPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/gappedpeak/UCSD.H1_Derived_Mesenchymal_Stem_Cells.H2BK12ac.AK270.gappedPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/gappedpeak/ raw_file_md5 9bfc3847d8071c9f04444af0fa1052db data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H2BK12ac peaks track_description version=2015;Original_cell_type=H1 Derived Mesenchymal Stem Cells;Donor=AK270;schema=BED3+15;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Skeletal life_stage Embryonic track_name ROADMAP-lifted Mesenchymal stem cell ChIP-seq H2BK12ac-histone-mark peaks (gappedPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK15ac • Mesendoderm NGENC36346VBWG • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mesendoderm Histone Show metadata Download track Track metadata identifier NGENC36346VBWG data_source ENCODE Download track Download number_of_intervals 22,525 bp_covered 7,142,361 output_type replicated peaks genome_build hg38 cell_type Mesendoderm biosample_type In vitro differentiated cells biosample_term_id BTO:0003953 tissue_category Embryo encode_experiment_id ENCSR297AUZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2BK15ac assay Histone ChIP-seq file_format bed narrowPeak file_size 443,935 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF055SQM.bed.gz processed_file_md5 b1ec8ae2142d20ad34c105e391faf9e3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF055SQM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF055SQM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF055SQM/@@download/ENCFF055SQM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF055SQM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d164039f5abd04ef4e3aa82fab1bf7e1 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2BK15ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesendoderm originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM1013119,GEO:GSM956002;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=mesendoderm;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000856;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Mesendoderm (repl. 1, 2) Histone ChIP-seq H2BK15ac replicated peaks (narrowPeak) [Experiment: ENCSR297AUZ] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK15ac • Neuronal stem cell NGENC437HIRVNV • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neuronal stem cell Histone Show metadata Download track Track metadata identifier NGENC437HIRVNV data_source ENCODE Download track Download number_of_intervals 32,611 bp_covered 19,485,080 output_type replicated peaks genome_build hg38 cell_type Neuronal stem cell biosample_type In vitro differentiated cells biosample_term_id CL:0000047 tissue_category Embryo encode_experiment_id ENCSR123JZO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2BK15ac assay Histone ChIP-seq file_format bed narrowPeak file_size 751,715 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF772JDP.bed.gz processed_file_md5 4efaa30ed482088b287cfed05f0192b5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF772JDP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF772JDP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF772JDP/@@download/ENCFF772JDP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF772JDP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b653d27cfc1b040d78f05e66742d5bc9 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2BK15ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens neuronal stem cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM956004,GEO:GSM956003;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neuronal stem cell;ENCODE_cell_slims=stem cell,neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NSC,neuronal stem cell,neural stem cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000047;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Neuronal stem cell (repl. 1, 2) Histone ChIP-seq H2BK15ac replicated peaks (narrowPeak) [Experiment: ENCSR123JZO] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK15ac • H1-hESC NGENC45MTQXGYH • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGENC45MTQXGYH data_source ENCODE Download track Download number_of_intervals 84,937 bp_covered 23,911,898 output_type pseudoreplicated peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR739BZR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2BK15ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,718,109 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF632HBS.bed.gz processed_file_md5 6f1ac2c6581237449023bf2ac93dedfa wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF632HBS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF632HBS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF632HBS/@@download/ENCFF632HBS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF632HBS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2e876a081af93af3b0c24543436f7436 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2BK15ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM605299,GEO:GSM605298;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) Histone ChIP-seq H2BK15ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR739BZR] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK15ac • Neuronal stem cell NGENC4OIB5PVZZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neuronal stem cell Histone Show metadata Download track Track metadata identifier NGENC4OIB5PVZZ data_source ENCODE Download track Download number_of_intervals 7,488 bp_covered 2,342,389 output_type pseudoreplicated peaks genome_build hg38 cell_type Neuronal stem cell biosample_type In vitro differentiated cells biosample_term_id CL:0000047 tissue_category Embryo encode_experiment_id ENCSR123JZO biological_replicate 2 technical_replicate 2_1 antibody H2BK15ac assay Histone ChIP-seq file_format bed narrowPeak file_size 147,221 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF878QZE.bed.gz processed_file_md5 fedb67bacaeaa316967bec75ec78ecc0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF878QZE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF878QZE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF878QZE/@@download/ENCFF878QZE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF878QZE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fbc60fbf498033d974632eeb20db1d92 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2BK15ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neuronal stem cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM956004,GEO:GSM956003;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neuronal stem cell;ENCODE_cell_slims=stem cell,neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NSC,neuronal stem cell,neural stem cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000047;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Neuronal stem cell (repl. 2) Histone ChIP-seq H2BK15ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR123JZO] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK15ac • H9 NGENC52A4ZWQSE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENC52A4ZWQSE data_source ENCODE Download track Download number_of_intervals 64 bp_covered 14,945 output_type replicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR734NCK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2BK15ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,715 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF253XUJ.bed.gz processed_file_md5 6bdc10ac177462bc5f8e97a99af2f5cd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF253XUJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF253XUJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF253XUJ/@@download/ENCFF253XUJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF253XUJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 33625ca52df5c137bc59bcf51196e5ce data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2BK15ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSM706062,GEO:GSM864034;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 1, 2) Histone ChIP-seq H2BK15ac replicated peaks (narrowPeak) [Experiment: ENCSR734NCK] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK15ac • H1-hESC NGENC64426GAP4 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGENC64426GAP4 data_source ENCODE Download track Download number_of_intervals 18,182 bp_covered 4,359,271 output_type pseudoreplicated peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR739BZR biological_replicate 2 technical_replicate 2_1 antibody H2BK15ac assay Histone ChIP-seq file_format bed narrowPeak file_size 353,921 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF516SPE.bed.gz processed_file_md5 9d074c0b365ffab7c6b57ff429ab632a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF516SPE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF516SPE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF516SPE/@@download/ENCFF516SPE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF516SPE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 71a53b8f6d3b7a7dbdf55fd3b61dd1a7 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2BK15ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM605299,GEO:GSM605298;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 2) Histone ChIP-seq H2BK15ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR739BZR] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK15ac • Neuronal stem cell NGENCDPIALN6FM • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neuronal stem cell Histone Show metadata Download track Track metadata identifier NGENCDPIALN6FM data_source ENCODE Download track Download number_of_intervals 70,609 bp_covered 65,140,526 output_type pseudoreplicated peaks genome_build hg38 cell_type Neuronal stem cell biosample_type In vitro differentiated cells biosample_term_id CL:0000047 tissue_category Embryo encode_experiment_id ENCSR123JZO biological_replicate 1 technical_replicate 1_1 antibody H2BK15ac assay Histone ChIP-seq file_format bed narrowPeak file_size 1,664,223 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF504TPW.bed.gz processed_file_md5 0207c271344c85cdbfff6371961a8819 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF504TPW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF504TPW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF504TPW/@@download/ENCFF504TPW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF504TPW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 efcd647f91c702fa5fd15d5b616ca361 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2BK15ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neuronal stem cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM956004,GEO:GSM956003;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neuronal stem cell;ENCODE_cell_slims=stem cell,neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NSC,neuronal stem cell,neural stem cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000047;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Neuronal stem cell (repl. 1) Histone ChIP-seq H2BK15ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR123JZO] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK15ac • H9 NGENCES4UM6KMU • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENCES4UM6KMU data_source ENCODE Download track Download number_of_intervals 80 bp_covered 18,039 output_type pseudoreplicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR734NCK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2BK15ac assay Histone ChIP-seq file_format bed narrowPeak file_size 2,087 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF399IVO.bed.gz processed_file_md5 57e51894a8d138a41a0a5297fc43f82f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF399IVO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF399IVO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF399IVO/@@download/ENCFF399IVO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF399IVO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 489cd2c65c1f0cf9b77c0665a6ff649f data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2BK15ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSM706062,GEO:GSM864034;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 1, 2) Histone ChIP-seq H2BK15ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR734NCK] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK15ac • Mesendoderm NGENCEXMKHQTE2 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mesendoderm Histone Show metadata Download track Track metadata identifier NGENCEXMKHQTE2 data_source ENCODE Download track Download number_of_intervals 15,411 bp_covered 5,248,413 output_type pseudoreplicated peaks genome_build hg38 cell_type Mesendoderm biosample_type In vitro differentiated cells biosample_term_id BTO:0003953 tissue_category Embryo encode_experiment_id ENCSR297AUZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H2BK15ac assay Histone ChIP-seq file_format bed narrowPeak file_size 322,281 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF511PZB.bed.gz processed_file_md5 701a108dd8f4db3338623f9b24f1dacc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF511PZB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF511PZB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF511PZB/@@download/ENCFF511PZB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF511PZB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c7a5d42c00741e53bf623e5906b6adc7 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2BK15ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesendoderm originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM1013119,GEO:GSM956002;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=mesendoderm;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000856;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Mesendoderm (repl. 1, 2) Histone ChIP-seq H2BK15ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR297AUZ] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK15ac • Mesendoderm NGENCEXT6NMWFG • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mesendoderm Histone Show metadata Download track Track metadata identifier NGENCEXT6NMWFG data_source ENCODE Download track Download number_of_intervals 4,474 bp_covered 1,311,944 output_type pseudoreplicated peaks genome_build hg38 cell_type Mesendoderm biosample_type In vitro differentiated cells biosample_term_id BTO:0003953 tissue_category Embryo encode_experiment_id ENCSR297AUZ biological_replicate 1 technical_replicate 1_1 antibody H2BK15ac assay Histone ChIP-seq file_format bed narrowPeak file_size 87,198 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF984BCC.bed.gz processed_file_md5 a8971641a7c00d2f501321b1fe2012e2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF984BCC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF984BCC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF984BCC/@@download/ENCFF984BCC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF984BCC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f5b3d05a3f19d119b15de477e78a6e86 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2BK15ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesendoderm originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM1013119,GEO:GSM956002;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=mesendoderm;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000856;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Mesendoderm (repl. 1) Histone ChIP-seq H2BK15ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR297AUZ] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK15ac • H9 NGENCFKWYG7MEX • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENCFKWYG7MEX data_source ENCODE Download track Download number_of_intervals 6,187 bp_covered 1,582,539 output_type pseudoreplicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR734NCK biological_replicate 2 technical_replicate 2_1 antibody H2BK15ac assay Histone ChIP-seq file_format bed narrowPeak file_size 126,532 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF724SQZ.bed.gz processed_file_md5 d81739b750b692475bd9176b46cd0c42 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF724SQZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF724SQZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF724SQZ/@@download/ENCFF724SQZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF724SQZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 90321a9dcfab86b4d8b05495a6942a0e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2BK15ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSM706062,GEO:GSM864034;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 2) Histone ChIP-seq H2BK15ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR734NCK] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK15ac • IMR-90 NGENCGQBKRFIP6 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGENCGQBKRFIP6 data_source ENCODE Download track Download number_of_intervals 112,680 bp_covered 62,752,052 output_type replicated peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id ENCSR274TJB biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody H2BK15ac assay Histone ChIP-seq file_format bed narrowPeak file_size 3,003,923 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF133IMP.bed.gz processed_file_md5 01f9ec5ddf7aa33806fa730fe89cdb87 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF133IMP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF133IMP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF133IMP/@@download/ENCFF133IMP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF133IMP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a1207d7600125a9b935c8877c79edb72 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2BK15ac replicated peaks track_description version=2024;Biosample_summary=Homo sapiens IMR-90;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM521875,GEO:GSM521877,GEO:GSM521878;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep3.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=IMR90;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 2_2, 3_1;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Embryonic track_name ENCODE IMR-90 (repl. 1, 3) Histone ChIP-seq H2BK15ac replicated peaks (narrowPeak) [Experiment: ENCSR274TJB] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK15ac • IMR-90 NGENCHB7F65ODU • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGENCHB7F65ODU data_source ENCODE Download track Download number_of_intervals 139,101 bp_covered 46,164,484 output_type pseudoreplicated peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id ENCSR274TJB biological_replicate 1 technical_replicate 1_1 antibody H2BK15ac assay Histone ChIP-seq file_format bed narrowPeak file_size 3,403,003 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF869LZL.bed.gz processed_file_md5 a13e4c3e3c1dd13ae9b83e04c89735e5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF869LZL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF869LZL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF869LZL/@@download/ENCFF869LZL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF869LZL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d845d50c379b9aec0837c74918a5c0d3 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2BK15ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens IMR-90;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM521875,GEO:GSM521877,GEO:GSM521878;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=IMR90;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Embryonic track_name ENCODE IMR-90 (repl. 1) Histone ChIP-seq H2BK15ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR274TJB] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H2BK15ac • IMR-90 NGENCHPHJVMDGB • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq IMR-90 Histone Show metadata Download track Track metadata identifier NGENCHPHJVMDGB data_source ENCODE Download track Download number_of_intervals 132,682 bp_covered 70,351,815 output_type pseudoreplicated peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id ENCSR274TJB biological_replicate 1, 2, 3 technical_replicate 1_1, 2_2, 3_1 antibody H2BK15ac assay Histone ChIP-seq file_format bed narrowPeak file_size 3,507,343 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF163AXV.bed.gz processed_file_md5 ced94a05721b394b5589762f245ca777 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF163AXV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF163AXV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF163AXV/@@download/ENCFF163AXV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF163AXV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 91b9ec1095b305c172ddc374080029a4 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2BK15ac pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens IMR-90;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM521875,GEO:GSM521877,GEO:GSM521878;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=IMR90;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Embryonic track_name ENCODE IMR-90 (repl. 1, 2, 3) Histone ChIP-seq H2BK15ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR274TJB] [Life stage: Embryonic] [Histone ChIP-seq peaks]