[
  {
    "identifier": "NGBEPELCYWMCR5BJ",
    "data_source": "Nott_2019",
    "file_name": "formatted_output_PU1_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz",
    "number_of_intervals": 48791,
    "bp_covered": 82267056,
    "output_type": "peaks",
    "genome_build": "hg38",
    "cell_type": "PU.1+ Microglia",
    "biosample_type": "Tissue",
    "biosample_term_id": "CL:0000129",
    "tissue_category": "Brain",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "H3K27ac",
    "assay": "Histone ChIP-seq",
    "file_format": "bed bed3-lifted",
    "file_size": 822603,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38",
    "downloaded_date": "10/02/2020",
    "release_date": "02/04/2020",
    "date_added_to_filer": "12/03/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz",
    "processed_file_md5": "dcbea562195c6dc5e6592df34e88227e",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/",
    "link_out_url": "https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/",
    "raw_file_url": "Not applicable",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/H3K27/PU1_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/Nott_2019/H3K27/PU1_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz",
    "raw_file_md5": "2eb92bd0cca0d176b2059df8a9847683",
    "data_category": "Histone ChIP-seq peaks",
    "classification": "Histone ChIP-seq H3K27ac peaks",
    "track_description": "version=2019;Original_cell_type=PU1_optimal_peak_IDR_ENCODE.H3K27;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=14yo, 18yo, 4yo;sexes=M;ethnicities=Caucasian, His;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=Focal cortical dysplasia type Ic, Negative pathology, Residual ateriovenous malformation;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED3",
    "system_category": "Nervous",
    "life_stage": "Adult, Child",
    "track_name": "Nott_2019 PU.1+ Microglia Histone ChIP-seq H3K27ac peaks (bed3-lifted) [Life stage: Adult, Child] [Histone ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz.tbi"
  }
]