[
  {
    "identifier": "NGBEPELTEX7FTWNU",
    "data_source": "Nott_2019",
    "file_name": "formatted_output_PU1_superEnhancer_L1_lifted.bed.gz",
    "number_of_intervals": 627,
    "bp_covered": 36383399,
    "output_type": "super-enhancer peaks",
    "genome_build": "hg38",
    "cell_type": "PU.1+ Microglia",
    "biosample_type": "Tissue",
    "biosample_term_id": "CL:0000129",
    "tissue_category": "Brain",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "H3K27ac",
    "assay": "Super-enhancer",
    "file_format": "bed bed6-lifted",
    "file_size": 16103,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38",
    "downloaded_date": "10/02/2020",
    "release_date": "02/04/2020",
    "date_added_to_filer": "12/03/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_PU1_superEnhancer_L1_lifted.bed.gz",
    "processed_file_md5": "b092169eb4fb0766f1ebd6df526a7726",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_PU1_superEnhancer_L1_lifted.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/",
    "link_out_url": "https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/",
    "raw_file_url": "Not applicable",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/Super_enhancers/PU1_superEnhancer_L1.gz -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/Nott_2019/Super_enhancers/PU1_superEnhancer_L1.gz",
    "raw_file_md5": "b7f0d422ddeea5e5a8b5df151d9f4e21",
    "data_category": "Enhancer",
    "classification": "H3K27ac super-enhancer peaks",
    "track_description": "version=2019;Original_cell_type=microglia;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 4yo, 18yo;sexes=M;ethnicities=His, Caucasian;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=Residual ateriovenous malformation, Negative pathology, Focal cortical dysplasia type Ic;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED6",
    "system_category": "Nervous",
    "life_stage": "Adult, Child",
    "track_name": "Nott_2019 PU.1+ Microglia Super-enhancer H3K27ac-histone-mark super-enhancer peaks (bed6-lifted) [Life stage: Adult, Child] [Enhancer]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_PU1_superEnhancer_L1_lifted.bed.gz.tbi"
  }
]