[
  {
    "identifier": "NGBEPELXRUBJ5PEB",
    "data_source": "Nott_2019",
    "file_name": "formatted_output_LHX2_enhancers_lifted.bed.gz",
    "number_of_intervals": 63793,
    "bp_covered": 68540614,
    "output_type": "enhancer peaks",
    "genome_build": "hg38",
    "cell_type": "Astrocyte",
    "biosample_type": "Tissue",
    "biosample_term_id": "CL:0000127",
    "tissue_category": "Brain",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "H3K27ac",
    "assay": "Enhancer",
    "file_format": "bed bed3-lifted",
    "file_size": 1048902,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38",
    "downloaded_date": "10/02/2020",
    "release_date": "02/04/2020",
    "date_added_to_filer": "12/03/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_LHX2_enhancers_lifted.bed.gz",
    "processed_file_md5": "eecea1fad502c7be39819a055c0937af",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_LHX2_enhancers_lifted.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/",
    "link_out_url": "https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/",
    "raw_file_url": "Not applicable",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/enhancers/LHX2_enhancers.sorted.bigBed -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/Nott_2019/enhancers/LHX2_enhancers.sorted.bigBed",
    "raw_file_md5": "33f70e542485065ce46412039fef9f69",
    "data_category": "Enhancer",
    "classification": "H3K27ac enhancer peaks",
    "track_description": "version=2019;Original_cell_type=astrocyte;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 12yo, 4yo;sexes=M;ethnicities=HIs, His, Caucasian;brain_regions=Temporal Cortex, Frontal Cortex;pathologies_dx=Negative pathology, Cystic encephalomalacia , Focal cortical dysplasia type Ic;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED3",
    "system_category": "Nervous",
    "life_stage": "Child",
    "track_name": "Nott_2019 Astrocyte Enhancer H3K27ac-histone-mark enhancer peaks (bed3-lifted) [Life stage: Child] [Enhancer]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_LHX2_enhancers_lifted.bed.gz.tbi"
  }
]