[
  {
    "identifier": "NGENC2445W2TAS",
    "data_source": "ENCODE",
    "file_name": "formatted_output_ENCFF309GVQ.bed.gz",
    "number_of_intervals": 722210,
    "bp_covered": 536298641,
    "output_type": "chromatin interactions",
    "genome_build": "hg38",
    "cell_type": "CD4+ alpha-beta T cell",
    "biosample_type": "Primary cell",
    "biosample_term_id": "CL:0000624",
    "tissue_category": "Blood",
    "encode_experiment_id": "ENCSR962FFY",
    "biological_replicate": 2,
    "technical_replicate": "2_1",
    "antibody": "CTCF",
    "assay": "ChIA-PET",
    "file_format": "bed bed4+19 interact",
    "file_size": 31107196,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38",
    "downloaded_date": "09/20/2025",
    "release_date": "07/16/2021",
    "date_added_to_filer": "10/27/2025",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF309GVQ.bed.gz",
    "processed_file_md5": "fc9c80bf40e3b96212136128294f3a59",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF309GVQ.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/",
    "link_out_url": "https://www.encodeproject.org/",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF309GVQ/@@download/ENCFF309GVQ.bedpe.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF309GVQ.bedpe.gz -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/",
    "raw_file_md5": "09a45d79bb10fa14c90c6cf8c201d58b",
    "data_category": "Chromatin interactions",
    "classification": "ChIA-PET chromatin interactions",
    "track_description": "version=2024;Biosample_summary=Homo sapiens activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 20 years;Reference=NR;External_resources=GEO:GSE187786;Project=ENCODE;Award=UM1HG009409;Experiment_date_released=2021-07-21;Submitted_track_name=LHT0039H.e500.clusters.cis.BE3.gz;ENCODE_preferred_default=false;ENCODE_biosample_term_name=activated CD4-positive, alpha-beta T cell;ENCODE_cell_slims=CD4+ T cell,leukocyte,T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=activated CD4-positive, alpha-beta T-lymphocyte,activated CD4-positive, alpha-beta T lymphocyte,activated CD4-positive, alpha-beta T-cell;Analysis_title=Lab custom GRCh38;GM=NR;Fragmentation_method=sonication (Branson Sonifier 250);Library_size=350-600;schema=BED4+19;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000896;is_hg38_lifted=no",
    "system_category": "Cardiovascular",
    "life_stage": "Adult",
    "track_name": "ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR962FFY] [Life stage: Adult] [Chromatin interactions]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF309GVQ.bed.gz.tbi"
  }
]