[
  {
    "identifier": "NGENC2NLVVNCX2",
    "data_source": "ENCODE",
    "file_name": "ENCFF169YUD.bed.gz",
    "number_of_intervals": 63751,
    "bp_covered": 33881469,
    "output_type": "IDR thresholded peaks",
    "genome_build": "hg38",
    "cell_type": "Brain",
    "biosample_type": "Organoid",
    "biosample_term_id": "UBERON:0000955",
    "tissue_category": "Brain",
    "encode_experiment_id": "ENCSR930SOT",
    "biological_replicate": "1, 2",
    "technical_replicate": "1_1, 1_2, 2_1, 2_2",
    "antibody": "CTCF",
    "assay": "TF ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 1101409,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1",
    "downloaded_date": "06/12/2022",
    "release_date": "07/09/2020",
    "date_added_to_filer": "08/21/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF169YUD.bed.gz",
    "processed_file_md5": "4cc7599c0ac594e1c018907b7b507d36",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF169YUD.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF169YUD/@@download/ENCFF169YUD.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF169YUD.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "4942d9660522bd0b4f1d9c2e5ff4e14b",
    "data_category": "TF ChIP-seq peaks",
    "classification": "TF ChIP-seq CTCF IDR thresholded peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens brain organoid, 30 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE175328;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-04-13,2020-07-06;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=brain;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000955;is_hg38_lifted=no",
    "system_category": "Nervous",
    "life_stage": "Embryonic",
    "track_name": "ENCODE Brain (repl. 1, 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR930SOT] [Life stage: Embryonic] [TF ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF169YUD.bed.gz.tbi"
  }
]