[
  {
    "identifier": "NGENC54WIWP7FZ",
    "data_source": "ENCODE",
    "file_name": "ENCFF378NEZ.bed.gz",
    "number_of_intervals": 229674,
    "bp_covered": 119771881,
    "output_type": "pseudoreplicated peaks",
    "genome_build": "hg38",
    "cell_type": "Brain",
    "biosample_type": "Organoid",
    "biosample_term_id": "UBERON:0000955",
    "tissue_category": "Brain",
    "encode_experiment_id": "ENCSR988RUI",
    "biological_replicate": 3,
    "technical_replicate": "3_1, 3_2",
    "antibody": "H3K27ac",
    "assay": "Mint-ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 5995790,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38",
    "downloaded_date": "06/12/2022",
    "release_date": "05/12/2021",
    "date_added_to_filer": "08/22/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF378NEZ.bed.gz",
    "processed_file_md5": "47201ffedf703239e4f026aa58c3c188",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF378NEZ.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF378NEZ/@@download/ENCFF378NEZ.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF378NEZ.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "f429f3678e761c60b8d603dd03f5202e",
    "data_category": "Histone ChIP-seq peaks",
    "classification": "Mint-ChIP-seq H3K27ac pseudoreplicated peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens brain organoid, 90 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE178047;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-24,2020-07-06;Submitted_track_name=rep3-pr1_vs_rep3-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=brain;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000955;is_hg38_lifted=no;narrowPeak_filter=qValueLog10",
    "system_category": "Nervous",
    "life_stage": "Embryonic",
    "track_name": "ENCODE Brain (repl. 3) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR988RUI] [Life stage: Embryonic] [Histone ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF378NEZ.bed.gz.tbi"
  }
]