[
  {
    "identifier": "NGENC6XNVWA5AL",
    "data_source": "ENCODE",
    "file_name": "ENCFF580VLC.bed.gz",
    "number_of_intervals": 72159,
    "bp_covered": 130749682,
    "output_type": "pseudoreplicated peaks",
    "genome_build": "hg38",
    "cell_type": "Gastrocnemius medialis",
    "biosample_type": "Tissue",
    "biosample_term_id": "UBERON:0011907",
    "tissue_category": "Skeletal Muscle",
    "encode_experiment_id": "ENCSR948YYZ",
    "biological_replicate": 2,
    "technical_replicate": "2_1",
    "antibody": "H3K27ac",
    "assay": "Histone ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 1990093,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1",
    "downloaded_date": "06/12/2022",
    "release_date": "10/09/2020",
    "date_added_to_filer": "08/22/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF580VLC.bed.gz",
    "processed_file_md5": "f3a07f9690b2032765b8e69e24eb4c48",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF580VLC.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF580VLC/@@download/ENCFF580VLC.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF580VLC.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "983025dd7821e89aef873797a34acfd4",
    "data_category": "Histone ChIP-seq peaks",
    "classification": "Histone ChIP-seq H3K27ac pseudoreplicated peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens gastrocnemius medialis tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENTEx,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 54 years;Reference=PMID:32728046;External_resources=GEO:GSE96486,SCREEN-GRCh38:gastrocnemius_medialis_male_adult_54_years;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-06-14,2016-06-02;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=gastrocnemius medialis;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=medial head of gastrocnemius muscle,medial head of gastrocnemius,caput mediale (musculus gastrocnemius),caput mediale musculus gastrocnemii;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0011907;is_hg38_lifted=no;narrowPeak_filter=qValueLog10",
    "system_category": "Muscular",
    "life_stage": "Adult",
    "track_name": "ENCODE Gastrocnemius medialis (repl. 2) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR948YYZ] [Life stage: Adult] [Histone ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF580VLC.bed.gz.tbi"
  }
]