[
  {
    "identifier": "NGENC7L7G2VEKA",
    "data_source": "ENCODE",
    "file_name": "formatted_output_ENCFF505KGY.bed.gz",
    "number_of_intervals": 974942,
    "bp_covered": 1043526539,
    "output_type": "chromatin interactions",
    "genome_build": "hg38",
    "cell_type": "HCT116",
    "biosample_type": "Cell line",
    "biosample_term_id": "EFO:0002824",
    "tissue_category": "Digestive",
    "encode_experiment_id": "ENCSR741AGK",
    "biological_replicate": 2,
    "technical_replicate": "2_1",
    "antibody": "CTCF",
    "assay": "ChIA-PET",
    "file_format": "bed bed4+19 interact",
    "file_size": 35069388,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38",
    "downloaded_date": "09/20/2025",
    "release_date": "01/29/2022",
    "date_added_to_filer": "10/27/2025",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF505KGY.bed.gz",
    "processed_file_md5": "2b3cd05b66f5688e9c42be9394905ae9",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF505KGY.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/",
    "link_out_url": "https://www.encodeproject.org/",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF505KGY/@@download/ENCFF505KGY.bedpe.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF505KGY.bedpe.gz -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/",
    "raw_file_md5": "712395ac712f0c95fd93b0b991599af4",
    "data_category": "Chromatin interactions",
    "classification": "ChIA-PET chromatin interactions",
    "track_description": "version=2024;Biosample_summary=Homo sapiens HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens BRD4 treated with 1 _M 5-Phenyl-1H-indole-3-acetic acid for 6 hours;Lab=Charles Lee;ENCODE_internal_tags=Degron;Life_stage_age=adult 48 years;Reference=NR;External_resources=GEO:GSE242653;Project=ENCODE;Award=3UM1HG009409-04S1;Experiment_date_released=2022-02-03;Submitted_track_name=LHH0202.e500.clusters.cis.BE3.gz;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HCT116;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=HCT-116 cell,HCT116 cell;Analysis_title=Lab custom GRCh38;GM=[Method:CRISPR|Category:Insertion];Fragmentation_method=sonication (Branson Sonifier 250);Library_size=300-600;schema=BED4+19;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no",
    "system_category": "Digestive",
    "life_stage": "Adult",
    "track_name": "ENCODE HCT116 (repl. 2) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR741AGK] [Life stage: Adult] [Chromatin interactions]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF505KGY.bed.gz.tbi"
  }
]