[
  {
    "identifier": "NGENC7NPXNW6N6",
    "data_source": "ENCODE",
    "file_name": "formatted_output_ENCFF561KEO.bed.gz",
    "number_of_intervals": 1262384,
    "bp_covered": 1355294391,
    "output_type": "chromatin interactions",
    "genome_build": "hg38",
    "cell_type": "CD4+ alpha-beta naive T cell",
    "biosample_type": "Primary cell",
    "biosample_term_id": "CL:0000895",
    "tissue_category": "Blood",
    "encode_experiment_id": "ENCSR550JJT",
    "biological_replicate": 2,
    "technical_replicate": "2_1",
    "antibody": "CTCF",
    "assay": "ChIA-PET",
    "file_format": "bed bed4+19 interact",
    "file_size": 53325782,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38",
    "downloaded_date": "09/20/2025",
    "release_date": "07/19/2021",
    "date_added_to_filer": "10/27/2025",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF561KEO.bed.gz",
    "processed_file_md5": "ce6d28f934d16e46ad4c0013c24bb460",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF561KEO.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/",
    "link_out_url": "https://www.encodeproject.org/",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF561KEO/@@download/ENCFF561KEO.bedpe.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF561KEO.bedpe.gz -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/",
    "raw_file_md5": "bb292c52ea1e65c648356491ecdf4696",
    "data_category": "Chromatin interactions",
    "classification": "ChIA-PET chromatin interactions",
    "track_description": "version=2024;Biosample_summary=Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 43 years;Reference=NR;External_resources=GEO:GSE187672;Project=ENCODE;Award=UM1HG009409;Experiment_date_released=2021-07-21;Submitted_track_name=LHT0070H.e500.clusters.cis.BE3.gz;ENCODE_preferred_default=false;ENCODE_biosample_term_name=activated naive CD4-positive, alpha-beta T cell;ENCODE_cell_slims=CD4+ T cell,T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=Lab custom GRCh38;GM=NR;Fragmentation_method=sonication (Branson Sonifier 250);Library_size=350-600;schema=BED4+19;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000497;is_hg38_lifted=no",
    "system_category": "Cardiovascular",
    "life_stage": "Adult",
    "track_name": "ENCODE CD4+ alpha-beta naive T cell (repl. 2) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR550JJT] [Life stage: Adult] [Chromatin interactions]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF561KEO.bed.gz.tbi"
  }
]