[
  {
    "identifier": "NGENCA3M4W3Z3Q",
    "data_source": "ENCODE",
    "file_name": "formatted_output_ENCFF718MMZ.bed.gz",
    "number_of_intervals": 849666,
    "bp_covered": 804969520,
    "output_type": "chromatin interactions",
    "genome_build": "hg38",
    "cell_type": "AG04450",
    "biosample_type": "Cell line",
    "biosample_term_id": "EFO:0006270",
    "tissue_category": "Lung",
    "encode_experiment_id": "ENCSR037FPN",
    "biological_replicate": 1,
    "technical_replicate": "1_1",
    "antibody": "CTCF",
    "assay": "ChIA-PET",
    "file_format": "bed bed4+19 interact",
    "file_size": 31506187,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38",
    "downloaded_date": "09/20/2025",
    "release_date": "08/11/2020",
    "date_added_to_filer": "10/27/2025",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF718MMZ.bed.gz",
    "processed_file_md5": "425b0546f3a7868c51f5a586ba78c13c",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF718MMZ.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/",
    "link_out_url": "https://www.encodeproject.org/",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF718MMZ/@@download/ENCFF718MMZ.bedpe.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF718MMZ.bedpe.gz -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/",
    "raw_file_md5": "81ad87f4a0bc34f120900dd10516e6e1",
    "data_category": "Chromatin interactions",
    "classification": "ChIA-PET chromatin interactions",
    "track_description": "version=2024;Biosample_summary=Homo sapiens AG04450;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=embryonic 12 weeks;Reference=NR;External_resources=GEO:GSE242576;Project=ENCODE;Award=UM1HG009409;Experiment_date_released=2022-06-27;Submitted_track_name=LHA0012H.e500.clusters.cis.BE3.gz;ENCODE_preferred_default=false;ENCODE_biosample_term_name=AG04450;ENCODE_cell_slims=connective tissue cell,fibroblast;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=Lab custom GRCh38;GM=NR;Fragmentation_method=NR;Library_size=300-600, 350-600;schema=BED4+19;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0006270;is_hg38_lifted=no",
    "system_category": "Respiratory",
    "life_stage": "Embryonic",
    "track_name": "ENCODE AG04450 (repl. 1) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR037FPN] [Life stage: Embryonic] [Chromatin interactions]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF718MMZ.bed.gz.tbi"
  }
]