[
  {
    "identifier": "NGENCAHLGHIBQU",
    "data_source": "ENCODE",
    "file_name": "ENCFF777IWJ.bed.gz",
    "number_of_intervals": 64785,
    "bp_covered": 53480834,
    "output_type": "pseudoreplicated peaks",
    "genome_build": "hg38",
    "cell_type": "Thymus",
    "biosample_type": "Tissue",
    "biosample_term_id": "UBERON:0002370",
    "tissue_category": "Immune Organ",
    "encode_experiment_id": "ENCSR776KLS",
    "biological_replicate": 1,
    "technical_replicate": "1_2",
    "antibody": "H3K27ac",
    "assay": "Histone ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 1611715,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1",
    "downloaded_date": "06/12/2022",
    "release_date": "08/14/2020",
    "date_added_to_filer": "08/22/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF777IWJ.bed.gz",
    "processed_file_md5": "d8d6035395bd318862805696fbb4350e",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF777IWJ.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF777IWJ/@@download/ENCFF777IWJ.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF777IWJ.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "6cdcfb56afcc5297079fddf60ff2e461",
    "data_category": "Histone ChIP-seq peaks",
    "classification": "Histone ChIP-seq H3K27ac pseudoreplicated peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens thymus tissue female embryo (110 days);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=embryonic 110 days;Reference=PMID:32728046;External_resources=GEO:GSM1027289,SCREEN-GRCh38:thymus_female_embryo_110_days;Project=Roadmap;Award=U01ES017156;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=thymus;ENCODE_cell_slims=NR;ENCODE_system_slims=endocrine system,immune system;ENCODE_biosample_term_synonyms=thymus gland,thymus organ;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002370;is_hg38_lifted=no;narrowPeak_filter=qValueLog10",
    "system_category": "Lymphatic",
    "life_stage": "Embryonic",
    "track_name": "ENCODE Thymus (repl. 1) Histone ChIP-seq H3K27ac pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR776KLS] [Life stage: Embryonic] [Histone ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF777IWJ.bed.gz.tbi"
  }
]