[
  {
    "identifier": "NGENCAHQVDDZID",
    "data_source": "ENCODE",
    "file_name": "ENCFF299NNR.bed.gz",
    "number_of_intervals": 61552,
    "bp_covered": 25406044,
    "output_type": "conservative IDR thresholded peaks",
    "genome_build": "hg38",
    "cell_type": "Keratinocyte",
    "biosample_type": "Primary cell",
    "biosample_term_id": "CL:0000312",
    "tissue_category": "Skin",
    "encode_experiment_id": "ENCSR036EGV",
    "biological_replicate": "1, 2",
    "technical_replicate": "1_1, 2_1",
    "antibody": "CTCF",
    "assay": "TF ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 1149558,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3",
    "downloaded_date": "07/10/2025",
    "release_date": "10/02/2020",
    "date_added_to_filer": "07/30/2025",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF299NNR.bed.gz",
    "processed_file_md5": "d27368ea27333f4deee8bc6e47fbf8ea",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF299NNR.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF299NNR/@@download/ENCFF299NNR.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF299NNR.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "66c4b68420af248a3e7d2de55a2f5c81",
    "data_category": "TF ChIP-seq peaks",
    "classification": "TF ChIP-seq CTCF conservative IDR thresholded peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 2.5 days;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_2,RegulomeDB_2_0,RegulomeDB_2_1;Life_stage_age=newborn 2-4 days;Reference=NR;External_resources=GEO:GSE174932,FactorBook:ENCSR036EGV;Project=GGR;Award=U01HG007919;Experiment_date_released=2017-10-10;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=foreskin keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=reproductive system,integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:1001606;is_hg38_lifted=no",
    "system_category": "Integumentary",
    "life_stage": "Newborn",
    "track_name": "ENCODE Keratinocyte (repl. 1, 2) TF ChIP-seq CTCF conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR036EGV] [Life stage: Newborn] [TF ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF299NNR.bed.gz.tbi"
  }
]