[
  {
    "identifier": "NGENCC4YQKC2QG",
    "data_source": "ENCODE",
    "file_name": "ENCFF440CRS.bed.gz",
    "number_of_intervals": 63635,
    "bp_covered": 18563665,
    "output_type": "pseudoreplicated peaks",
    "genome_build": "hg38",
    "cell_type": "iPS DF 6.9",
    "biosample_type": "Cell line",
    "biosample_term_id": "EFO:0007098",
    "tissue_category": "iPSC",
    "encode_experiment_id": "ENCSR857LLS",
    "biological_replicate": 2,
    "technical_replicate": "2_1",
    "antibody": "H3K4me1",
    "assay": "Histone ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 1401944,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1",
    "downloaded_date": "06/12/2022",
    "release_date": "11/20/2020",
    "date_added_to_filer": "08/22/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF440CRS.bed.gz",
    "processed_file_md5": "8b6b4ccf610d84c7b279c697bb49e12a",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF440CRS.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF440CRS/@@download/ENCFF440CRS.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF440CRS.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "7c256a0b63688a753b2550714b36b0ba",
    "data_category": "Histone ChIP-seq peaks",
    "classification": "Histone ChIP-seq H3K4me1 pseudoreplicated peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens iPS DF 6.9;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM752980,GEO:GSM706073;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=iPS DF 6.9;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=reproductive system,integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007098;is_hg38_lifted=no;narrowPeak_filter=qValueLog10",
    "system_category": "Stem Cell",
    "life_stage": "Newborn",
    "track_name": "ENCODE iPS DF 6.9 (repl. 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR857LLS] [Life stage: Newborn] [Histone ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF440CRS.bed.gz.tbi"
  }
]