[
  {
    "identifier": "NGENCCMQBGQJGC",
    "data_source": "ENCODE",
    "file_name": "ENCFF683JLH.bed.gz",
    "number_of_intervals": 85898,
    "bp_covered": 128343328,
    "output_type": "replicated peaks",
    "genome_build": "hg38",
    "cell_type": "Brain",
    "biosample_type": "Organoid",
    "biosample_term_id": "UBERON:0000955",
    "tissue_category": "Brain",
    "encode_experiment_id": "ENCSR217AJC",
    "biological_replicate": "2, 3",
    "technical_replicate": "2_1, 3_1",
    "antibody": "H3K27ac",
    "assay": "Mint-ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 2600560,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38",
    "downloaded_date": "06/12/2022",
    "release_date": "05/05/2021",
    "date_added_to_filer": "08/22/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF683JLH.bed.gz",
    "processed_file_md5": "1375b9dde18e5b1b71b32a3c65e6ddac",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF683JLH.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF683JLH/@@download/ENCFF683JLH.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF683JLH.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "c958ac58ea88ae5ab1e56e4c39f888c4",
    "data_category": "Histone ChIP-seq peaks",
    "classification": "Mint-ChIP-seq H3K27ac replicated peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens brain organoid, 180 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE176723;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-07-30,2020-07-06;Submitted_track_name=rep2_vs_rep3.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=brain;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 1_2, 2_1, 2_2, 3_1, 3_2;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000955;is_hg38_lifted=no;narrowPeak_filter=qValueLog10",
    "system_category": "Nervous",
    "life_stage": "Embryonic",
    "track_name": "ENCODE Brain (repl. 2, 3) Mint-ChIP-seq H3K27ac-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR217AJC] [Life stage: Embryonic] [Histone ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF683JLH.bed.gz.tbi"
  }
]