[
  {
    "identifier": "NGENCCZGAPHNF5",
    "data_source": "ENCODE",
    "file_name": "ENCFF988MRW.bed.gz",
    "number_of_intervals": 525903,
    "bp_covered": 186816788,
    "output_type": "peaks",
    "genome_build": "hg38",
    "cell_type": "IMR-90",
    "biosample_type": "Cell line",
    "biosample_term_id": "EFO:0001196",
    "tissue_category": "Lung",
    "encode_experiment_id": "ENCSR076TTY",
    "biological_replicate": 2,
    "technical_replicate": "2_1",
    "antibody": "CTCF",
    "assay": "ChIA-PET",
    "file_format": "bed narrowPeak",
    "file_size": 12890559,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38",
    "downloaded_date": "06/12/2022",
    "release_date": "10/08/2020",
    "date_added_to_filer": "08/22/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF988MRW.bed.gz",
    "processed_file_md5": "31b84edca53afe2a34c8fd7127c47830",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF988MRW.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF988MRW/@@download/ENCFF988MRW.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF988MRW.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "0539b8b5057e693b85014c37df3c7d80",
    "data_category": "Chromatin interactions",
    "classification": "ChIA-PET CTCF peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens IMR-90;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=embryonic 16 weeks;Reference=PMID:28358394;External_resources=GEO:GSE176936;Project=ENCODE;Award=UM1HG009409;Experiment_date_released=2021-01-25;Submitted_track_name=LHI0004H.no_input_all_peaks.maxscore1000.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=IMR90;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no;narrowPeak_filter=qValueLog10",
    "system_category": "Respiratory",
    "life_stage": "Embryonic",
    "track_name": "ENCODE IMR-90 (repl. 2) ChIA-PET CTCF peaks (narrowPeak) [Experiment: ENCSR076TTY] [Life stage: Embryonic] [Chromatin interactions]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF988MRW.bed.gz.tbi"
  }
]