[
  {
    "identifier": "NGENCDDOS4YVYV",
    "data_source": "ENCODE",
    "file_name": "formatted_output_ENCFF653GUB.bed.gz",
    "number_of_intervals": 653448,
    "bp_covered": 645380656,
    "output_type": "chromatin interactions",
    "genome_build": "hg38",
    "cell_type": "HEK293T",
    "biosample_type": "Cell line",
    "biosample_term_id": "EFO:0001184",
    "tissue_category": "Kidney",
    "encode_experiment_id": "ENCSR676KCF",
    "biological_replicate": 2,
    "technical_replicate": "2_1",
    "antibody": "CTCF",
    "assay": "ChIA-PET",
    "file_format": "bed bed4+19 interact",
    "file_size": 23143448,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38",
    "downloaded_date": "09/20/2025",
    "release_date": "08/17/2020",
    "date_added_to_filer": "10/27/2025",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF653GUB.bed.gz",
    "processed_file_md5": "6667aa7ff7f04ea32ada8e1755854a30",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF653GUB.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/",
    "link_out_url": "https://www.encodeproject.org/",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF653GUB/@@download/ENCFF653GUB.bedpe.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF653GUB.bedpe.gz -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/",
    "raw_file_md5": "fd64caaf7d3e74c602f0a102f01ad19a",
    "data_category": "Chromatin interactions",
    "classification": "ChIA-PET chromatin interactions",
    "track_description": "version=2024;Biosample_summary=Homo sapiens HEK293T;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=PMID:28358394;External_resources=GEO:GSE177741;Project=ENCODE;Award=UM1HG009409;Experiment_date_released=2021-01-25,2020-09-28;Submitted_track_name=LHH0086V.e500.clusters.cis.BE3.gz;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293T;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=Lab custom GRCh38;GM=NR;Fragmentation_method=NR;Library_size=350-600;schema=BED4+19;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001184;is_hg38_lifted=no",
    "system_category": "Renal",
    "life_stage": "Embryonic",
    "track_name": "ENCODE HEK293T (repl. 2) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR676KCF] [Life stage: Embryonic] [Chromatin interactions]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF653GUB.bed.gz.tbi"
  }
]