[
  {
    "identifier": "NGENCDL725RZXL",
    "data_source": "ENCODE",
    "file_name": "ENCFF700QXT.bed.gz",
    "number_of_intervals": 53783,
    "bp_covered": 23096461,
    "output_type": "optimal IDR thresholded peaks",
    "genome_build": "hg38",
    "cell_type": "LNCAP",
    "biosample_type": "Cell line",
    "biosample_term_id": "EFO:0002071",
    "tissue_category": "Male Reproductive",
    "encode_experiment_id": "ENCSR315NAC",
    "biological_replicate": "1, 2",
    "technical_replicate": "1_1, 2_1",
    "antibody": "CTCF",
    "assay": "TF ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 974749,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3",
    "downloaded_date": "06/04/2018",
    "release_date": "07/21/2017",
    "date_added_to_filer": "08/21/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF700QXT.bed.gz",
    "processed_file_md5": "6539f9a9853594351e5b7314d315a7e4",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF700QXT.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF700QXT/@@download/ENCFF700QXT.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF700QXT.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "2f92a348d3c678bf62147371f21cff7e",
    "data_category": "TF ChIP-seq peaks",
    "classification": "TF ChIP-seq CTCF optimal IDR thresholded peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens LNCAP;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2;Life_stage_age=adult 50 years;Reference=NR;External_resources=FactorBook:ENCSR315NAC,GEO:GSE105500,SCREEN-GRCh38:LNCAP;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-06-29,2017-03-20;Submitted_track_name=IDR_final_optimal.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=LNCAP;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=LNCAP cell;Analysis_title=ENCODE3 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002071;is_hg38_lifted=no",
    "system_category": "Reproductive",
    "life_stage": "Adult",
    "track_name": "ENCODE LNCAP (repl. 1, 2) TF ChIP-seq CTCF optimal IDR thresholded peaks (narrowPeak) [Experiment: ENCSR315NAC] [Life stage: Adult] [TF ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF700QXT.bed.gz.tbi"
  }
]