[
  {
    "identifier": "NGENCGNQFOCIED",
    "data_source": "ENCODE",
    "file_name": "ENCFF477HJP.bed.gz",
    "number_of_intervals": 200574,
    "bp_covered": 244108012,
    "output_type": "replicated peaks",
    "genome_build": "hg38",
    "cell_type": "Mesenchymal stem cell",
    "biosample_type": "Stem cell",
    "biosample_term_id": "CL:0000134",
    "tissue_category": "Connective Tissue",
    "encode_experiment_id": "ENCSR196LEI",
    "biological_replicate": "1, 2",
    "technical_replicate": "1_1, 2_1",
    "antibody": "H3K4me1",
    "assay": "Histone ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 5440085,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1",
    "downloaded_date": "06/12/2022",
    "release_date": "01/30/2021",
    "date_added_to_filer": "08/22/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF477HJP.bed.gz",
    "processed_file_md5": "2e1d730bfb73c7b3cc4e2e5698b5b8ec",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF477HJP.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF477HJP/@@download/ENCFF477HJP.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF477HJP.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "6126b08da7cecfd4b0ded1dd54b952c4",
    "data_category": "Histone ChIP-seq peaks",
    "classification": "Histone ChIP-seq H3K4me1 replicated peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens mesenchymal stem cell female adult and female adult (41 years) and female adult (59 years), originated from adipose tissue;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM621418,GEO:GSM772748,GEO:GSM772762;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=mesenchymal stem cell;ENCODE_cell_slims=stem cell,connective tissue cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000134;is_hg38_lifted=no;narrowPeak_filter=qValueLog10",
    "system_category": "Skeletal",
    "life_stage": "Adult",
    "track_name": "ENCODE Mesenchymal stem cell (repl. 1, 2) Histone ChIP-seq H3K4me1 replicated peaks (narrowPeak) [Experiment: ENCSR196LEI] [Life stage: Adult] [Histone ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF477HJP.bed.gz.tbi"
  }
]